Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0006735

Physical Location & Seq

Genomic Coordinates Reverse (-)

36070930 .. 36073002

Gene Structure 2073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1231100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2073 bp

ATGTTCCTCACAAGCATTCCATCGTCTAAAACCCTCATCACCCCAAAAACCCTAACCCTACCTCTCGCATTCCTCTCCACAACCTCACCACCTTCCGATCAACAACCACCGCAACACCTCCACCAAGACCAAGCAATCAGCATAGAAGACAACAGATCATACTTCACCAAAAAAATCCACACCCTCTGCGCCACCCACCGCGATGTCGACGAAGCCCTCCGCCTCCTCGACCGCCTCCGCCTTCAAGGCTACCGTCCCGACTCCCTCAACCTCAGCAGCATCGTCCACGCTCTCTGCGACTCCAACCGCTTCGATGAAGCCCACCACCGCTTTGGCCACTATGTAGCTTCCGACTGCGCCCCCGACGAGCGCACTTGCAATGTTATTGTTGCCCGGTTGCTGGATTCAAAAACCCCACATGCCACATTGCGTGTTCTGCGCTGTTTGACAAATTTTAAGCCCGATTTCGTGGCGTCTTTGGTTAATTACAACCGTTTGATCGACCAATTTTGCTCGATCTTACGACCCAGTGACGGTCATAGAGTGTTGTTTGATATGATTAGTAGAGGGCATTGTCCGAATGCTGTTTCTTACACTACATTGATCAATGGGTATTGTTTGATTGGTGCGTTGGGTGATGCCCAGAAGGTGTTCGATGAAATGAGTGAAAGGGGAGTGGCGCCAAATTCCCTGACGCATAGCGTGATGATTCGTGGTGTTCTTCGGCAGAGGGATGTTGGGCGTGCAAAAGAATTGATGGGAAAGCTCTGGGAGATCATGAAAGGTGAAGATGATGAGACTGTAAAGAGTGCGGCTTTTGGGAATCTCGTTGATTCTATGTGTAGAGAAGGGTTTTTTAATGAAGTGTTTGACATTGCGGAAGATATGCCACAGGGGAAGACTGTGACAGAGGATTTTGCTTATGGACAAATGATAGATTCGCTTTGTAAAGCCAGAAGGCATCATGGGGCATCCAGGATTGTTTATATTATGAGGAGTCAAGGGTTTGTTCCAAAGCTAACGTCATATAATTCCATTTTACATGGACTGAGCAAGGAGGGAGAGGGAGGTTGCATGAGGGCTTATCAGTTGCTGGAGGAAGGAGTGAACTTTGGTTACTTTCCGTCGGAGTACACTTACAAGGTCCTATTGGAAGGTCTGTGCCTAGAATCGGACGTCAAGAAGGCAAGGGAGGTTCTTGAATATATGCTAAAGAAGGAAGGAGTGGACAGAACTAGGATTTATAACATATATTTGAGAGCGTTGTGTCTTGTGAATAACATGACTGAGCTTTTGAATGGACTTGTTTCGATGCTCCAGAGCCAGTGTCAGCCTGATGTGATCACCCTAAACACAGTTCTTAATGGGTTCTGCAAGATGGAAAGAATCGAGGAAGCGCTAAAGGTACTTGATGACATGATGAGTGGCAAGTTTTGTGCACCAGACGTGGTGACCTTCACAACGATCATCAGTGGTTTAATAAATGTGGGAAGAACTCAAGAAGCTCTTGTTATGTTGCACCATGTAATGCCCGAGAAAGGTTTCAGAGCTAATGTTGTGACGTACAATGCTGTACTTCGTGGTTTATTCAAGCATAGGCAAGCAAGAGAAGCAATGGATTTGTTCAATGGCATGGCAAACGATGGCGTGGCTGCTGACAGTACTACTTATACTATAATAATTGACGGGTTATGCGAATCAGATCAAATAGAAGAAGCTAAGAAGTTTTGGGATGAGGTTATTTGGCCATCAAAGATCCACGATAATTTTGTGTATGCTGCCCTTATCAAGGGGATTTGTCGTTCTGGGAGGTTTGAAGAAGCGTGCCATTTCCTTTATGAACTAGTAGATGCTGGGGTCTCTCCGAATATATACAGTTATAACATTGTGATCGACGCTGCTTGCAAATCCGGATTGAGGAAGGAAGCGTATGAAGTTGTAAGAGAGATGAAAAGAAACGGACTGGCTCCAGATTCTGTAACATGGAGGATTCTTGACAAGTTGCAGGGTGGCAGAAAACAATCTTGTGATGAGGTTTCGAATTTTCAATCAATAAATGGGCCACAGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

691

Amino Acids

77.63

Weight (kDa)

6.23

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	160 - 206	3.4e-09	PPR repeat family
PPR_3	PF13812	182 - 237	6.7e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	189 - 222	3.7e-12	PPR repeat
PPR_2	PF13041	193 - 240	3.8e-15	PPR repeat family
PPR	PF01535	196 - 226	5.2e-07	PPR repeat
PPR_2	PF13041	339 - 388	2.4e-06	PPR repeat family
PPR_1	PF12854	372 - 403	5.8e-06	PPR repeat
PPR_2	PF13041	414 - 459	5e-07	PPR repeat family
PPR_1	PF12854	442 - 473	5.7e-11	PPR repeat
PPR_2	PF13041	445 - 494	1.1e-13	PPR repeat family
PPR_2	PF13041	481 - 529	6.4e-10	PPR repeat family
PPR_3	PF13812	508 - 562	1e-05	Pentatricopeptide repeat domain
PPR_2	PF13041	518 - 565	3e-16	PPR repeat family
PPR_1	PF12854	549 - 579	2.4e-06	PPR repeat
PPR_2	PF13041	588 - 636	1.3e-11	PPR repeat family
PPR_3	PF13812	613 - 670	1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	619 - 651	2.4e-09	PPR repeat
PPR_2	PF13041	625 - 665	8.5e-11	PPR repeat family
PPR	PF01535	625 - 655	1.8e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18020
fragaria_vesca	FvH4_5g17250
malus_domestica	MD06G1231100.v1.1
prunus_persica	Prupe.5G232400_v2.0.a1
pyrus_communis	pycom06g20240
rosa_chinensis	RchiOBHm_Chr7g0178541
rosa_laevigata	RLG00000005439 RLG00000010173
rosa_multiflora	Rmu_sc0000775.1_g000015 Rmu_sc0000961.1_g000015 Rmu_sc0002421.1_g000004 Rmu_sc0003637.1_g000006 Rmu_sc0011483.1_g000001 Rmu_sc0016060.1_g000005 Rmu_ssc0000343.1_g000033
rosa_roxburghii	Rroxscaffold_3G00274830 Rroxscaffold_5G00333820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh3CG367500 Rh4AG426400 Rh4DG434700 Rh7AG016400 Rh7BG015900 Rh7CG016600 Rh7DG016500
rosa_wichuraiana	Rw7G001300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1245, 1881
AatII	GACGTC	1 cut(s)	1179
AccB1I	GGYRCC	1 cut(s)	679
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	1 cut(s)	201
AccIII	TCCGGA	1 cut(s)	1910
AciI	CCGC	9 cut(s)	110, 199, 220, 232, 238, 307, 328, 812, 878
AclWI	GGATC	1 cut(s)	1750
AcoI	YGGCCR	2 cut(s)	334, 1745
AcsI	RAATTY	3 cut(s)	451, 685, 2041
AcyI	GRCGYC	3 cut(s)	473, 680, 1176
AfaI	GTAC	5 cut(s)	1133, 1407, 1565, 1575, 1663
AfeI	AGCGCT	1 cut(s)	1398
AfiI	CCNNNNNNNGG	6 cut(s)	400, 533, 1171, 1538, 1789, 1917
AgsI	TTSAA	8 cut(s)	245, 408, 1202, 1297, 1591, 1627, 1817, 2048
AhlI	ACTAGT	1 cut(s)	1843
AjiI	CACGTC	1 cut(s)	1447
AjnI	CCWGG	1 cut(s)	974
AloI	GAACNNNNNNTCC	2 cut(s)	1786, 1818
AluBI	AGCT	7 cut(s)	347, 766, 1018, 1291, 1505, 1550, 1718
AluI	AGCT	7 cut(s)	347, 766, 1018, 1291, 1505, 1550, 1718
Alw21I	GWGCWC	1 cut(s)	1441
Alw26I	GTCTC	2 cut(s)	791, 1864
Alw44I	GTGCAC	1 cut(s)	1437
AlwI	GGATC	1 cut(s)	1750
AlwNI	CAGNNNCTG	2 cut(s)	1093, 1976
Ama87I	CYCGRG	1 cut(s)	1532
Aor13HI	TCCGGA	1 cut(s)	1910
Aor51HI	AGCGCT	1 cut(s)	1398
AoxI	GGCC	3 cut(s)	334, 1745, 2060
ApaLI	GTGCAC	1 cut(s)	1437
ApeKI	GCWGC	4 cut(s)	276, 1652, 1778, 1898
ApoI	RAATTY	3 cut(s)	451, 685, 2041
ArsI	GACNNNNNNTTYG	4 cut(s)	1007, 1039, 1276, 1308
Asp700I	GAANNNNTTC	2 cut(s)	650, 1541
AspLEI	GCGC	6 cut(s)	191, 359, 372, 441, 682, 1399
AspS9I	GGNCC	2 cut(s)	1144, 2060
AsuC2I	CCSGG	1 cut(s)	394
AsuHPI	GGTGA	7 cut(s)	31, 78, 157, 647, 797, 1336, 1462
AsuII	TTCGAA	1 cut(s)	2039
AvaI	CYCGRG	1 cut(s)	1532
AvaII	GGWCC	1 cut(s)	1144
BaeGI	GKGCMC	1 cut(s)	1441
BalI	TGGCCA	2 cut(s)	336, 1747
BanI	GGYRCC	1 cut(s)	679
BbsI	GAAGAC	2 cut(s)	153, 905
Bbv12I	GWGCWC	1 cut(s)	1441
BbvCI	CCTCAGC	1 cut(s)	272
BbvI	GCAGC	4 cut(s)	288, 1639, 1765, 1885
BccI	CCATC	5 cut(s)	28, 751, 1372, 1637, 1756
BciT130I	CCWGG	1 cut(s)	976
BclI	TGATCA	2 cut(s)	603, 1341
BcnI	CCSGG	1 cut(s)	394
BcoDI	GTCTC	2 cut(s)	791, 1864
BcuI	ACTAGT	1 cut(s)	1843
BfaI	CTAG	3 cut(s)	1166, 1236, 1844
BfoI	RGCGCY	2 cut(s)	683, 1400
BglI	GCCNNNNNGGC	1 cut(s)	246
BisI	GCNGC	5 cut(s)	277, 813, 1653, 1779, 1899
BlsI	GCNGC	5 cut(s)	278, 814, 1654, 1780, 1900
BmcAI	AGTACT	1 cut(s)	1663
Bme1390I	CCNGG	2 cut(s)	394, 976
Bme18I	GGWCC	1 cut(s)	1144
BmeT110I	CYCGRG	1 cut(s)	1532
BmgBI	CACGTC	1 cut(s)	1447
BmgT120I	GGNCC	2 cut(s)	1144, 2060
BmiI	GGNNCC	2 cut(s)	681, 1968
BmrFI	CCNGG	2 cut(s)	394, 976
BmrI	ACTGGG	1 cut(s)	522
BmsI	GCATC	6 cut(s)	288, 628, 970, 980, 1302, 1840
BmuI	ACTGGG	1 cut(s)	522
BpiI	GAAGAC	2 cut(s)	153, 905
BpmI	CTGGAG	3 cut(s)	1115, 1301, 1953
Bpu10I	CCTNAGC	1 cut(s)	272
Bpu14I	TTCGAA	1 cut(s)	2039
BpuEI	CTTGAG	1 cut(s)	1482
BpuMI	CCSGG	1 cut(s)	394
BsaHI	GRCGYC	3 cut(s)	473, 680, 1176
BsaI	GGTCTC	1 cut(s)	1864
BsaWI	WCCGGW	1 cut(s)	1910
Bsc4I	CCNNNNNNNGG	6 cut(s)	400, 533, 1171, 1538, 1789, 1917
Bse1I	ACTGG	3 cut(s)	528, 1324, 1968
Bse3DI	GCAATG	4 cut(s)	385, 425, 873, 1620
BseAI	TCCGGA	1 cut(s)	1910
BseBI	CCWGG	1 cut(s)	976
BseGI	GGATG	3 cut(s)	739, 971, 1738
BseLI	CCNNNNNNNGG	6 cut(s)	400, 533, 1171, 1538, 1789, 1917
BseMI	GCAATG	4 cut(s)	385, 425, 873, 1620
BseMII	CTCAG	3 cut(s)	286, 1040, 1278
BseNI	ACTGG	3 cut(s)	528, 1324, 1968
BseRI	GAGGAG	2 cut(s)	215, 1009
BseSI	GKGCMC	1 cut(s)	1441
BseXI	GCAGC	4 cut(s)	288, 1639, 1765, 1885
BseYI	CCCAGC	1 cut(s)	1853
Bsh1236I	CGCG	1 cut(s)	201
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	3 cut(s)	336, 1747, 2062
BshNI	GGYRCC	1 cut(s)	679
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	1441
BsiHKCI	CYCGRG	1 cut(s)	1532
BsiSI	CCGG	2 cut(s)	394, 1911
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	6 cut(s)	400, 533, 1171, 1538, 1789, 1917
BsmAI	GTCTC	2 cut(s)	791, 1864
BsmFI	GGGAC	1 cut(s)	240
BsmI	GAATGC	3 cut(s)	15, 68, 586
BsnI	GGCC	3 cut(s)	336, 1747, 2062
Bso31I	GGTCTC	1 cut(s)	1864
BsoBI	CYCGRG	1 cut(s)	1532
Bsp119I	TTCGAA	1 cut(s)	2039
Bsp1286I	GDGCHC	1 cut(s)	1441
Bsp13I	TCCGGA	1 cut(s)	1910
BspACI	CCGC	9 cut(s)	110, 199, 220, 232, 238, 307, 328, 812, 878
BspANI	GGCC	3 cut(s)	336, 1747, 2062
BspCNI	CTCAG	3 cut(s)	285, 1041, 1279
BspEI	TCCGGA	1 cut(s)	1910
BspFNI	CGCG	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	777
BspLI	GGNNCC	2 cut(s)	681, 1968
BspPI	GGATC	1 cut(s)	1750
BspT104I	TTCGAA	1 cut(s)	2039
BspT107I	GGYRCC	1 cut(s)	679
BspTNI	GGTCTC	1 cut(s)	1864
BsrDI	GCAATG	4 cut(s)	385, 425, 873, 1620
BsrI	ACTGG	3 cut(s)	528, 1324, 1968
BssNI	GRCGYC	3 cut(s)	473, 680, 1176
Bst2UI	CCWGG	1 cut(s)	976
Bst4CI	ACNGT	8 cut(s)	254, 494, 536, 802, 904, 1357, 1661, 1877
BstACI	GRCGYC	3 cut(s)	473, 680, 1176
BstBI	TTCGAA	1 cut(s)	2039
BstC8I	GCNNGC	4 cut(s)	744, 1602, 1825, 1903
BstDEI	CTNAG	4 cut(s)	272, 1049, 1287, 1719
BstEII	GGTNACC	1 cut(s)	1450
BstENI	CCTNNNNNAGG	1 cut(s)	1787
BstF5I	GGATG	3 cut(s)	739, 971, 1738
BstFNI	CGCG	1 cut(s)	201
BstH2I	RGCGCY	2 cut(s)	683, 1400
BstHHI	GCGC	6 cut(s)	191, 359, 372, 441, 682, 1399
BstMAI	GTCTC	2 cut(s)	791, 1864
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	3 cut(s)	246, 436, 1610
BstNI	CCWGG	1 cut(s)	976
BstNSI	RCATGY	1 cut(s)	422
BstPI	GGTNACC	1 cut(s)	1450
BstSCI	CCNGG	2 cut(s)	392, 974
BstSLI	GKGCMC	1 cut(s)	1441
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	4 cut(s)	288, 1639, 1765, 1885
BstV2I	GAAGAC	2 cut(s)	153, 905
BstX2I	RGATCY	1 cut(s)	1755
BstXI	CCANNNNNNTGG	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	1755
BsuRI	GGCC	3 cut(s)	336, 1747, 2062
BtgZI	GCGATG	1 cut(s)	216
BtrI	CACGTC	1 cut(s)	1447
BtsCI	GGATG	3 cut(s)	739, 971, 1738
BtsIMutI	CAGTG	3 cut(s)	535, 1331, 1477
Cac8I	GCNNGC	4 cut(s)	744, 1602, 1825, 1903
CaiI	CAGNNNCTG	2 cut(s)	1093, 1976
CciI	TCATGA	1 cut(s)	777
CfoI	GCGC	6 cut(s)	191, 359, 372, 441, 682, 1399
Cfr13I	GGNCC	2 cut(s)	1144, 2060
CseI	GACGC	3 cut(s)	462, 703, 1904
Csp6I	GTAC	5 cut(s)	1132, 1406, 1564, 1574, 1662
CviQI	GTAC	5 cut(s)	1132, 1406, 1564, 1574, 1662
DdeI	CTNAG	4 cut(s)	272, 1049, 1287, 1719
DinI	GGCGCC	1 cut(s)	681
EaeI	YGGCCR	2 cut(s)	334, 1745
EciI	GGCGGA	2 cut(s)	209, 227
Eco31I	GGTCTC	1 cut(s)	1864
Eco47I	GGWCC	1 cut(s)	1144
Eco47III	AGCGCT	1 cut(s)	1398
Eco88I	CYCGRG	1 cut(s)	1532
Eco91I	GGTNACC	1 cut(s)	1450
EcoNI	CCTNNNNNAGG	1 cut(s)	1787
EcoO109I	RGGNCCY	1 cut(s)	1144
EcoO65I	GGTNACC	1 cut(s)	1450
EcoRII	CCWGG	1 cut(s)	974
EgeI	GGCGCC	1 cut(s)	681
EheI	GGCGCC	1 cut(s)	681
FalI	AAGNNNNNCTT	2 cut(s)	1491, 1523
FaqI	GGGAC	1 cut(s)	240
FbaI	TGATCA	2 cut(s)	603, 1341
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	5 cut(s)	277, 813, 1653, 1779, 1899
FokI	GGATG	3 cut(s)	746, 958, 1745
Fsp4HI	GCNGC	5 cut(s)	277, 813, 1653, 1779, 1899
FspBI	CTAG	3 cut(s)	1166, 1236, 1844
GlaI	GCGC	6 cut(s)	190, 358, 371, 440, 681, 1398
GluI	GCNGC	5 cut(s)	277, 813, 1653, 1779, 1899
GsaI	CCCAGC	1 cut(s)	1857
GsuI	CTGGAG	3 cut(s)	1115, 1301, 1953
HaeII	RGCGCY	2 cut(s)	683, 1400
HaeIII	GGCC	3 cut(s)	336, 1747, 2062
HapII	CCGG	2 cut(s)	394, 1911
HgaI	GACGC	3 cut(s)	462, 703, 1904
HhaI	GCGC	6 cut(s)	191, 359, 372, 441, 682, 1399
Hin1I	GRCGYC	3 cut(s)	473, 680, 1176
Hin6I	GCGC	6 cut(s)	189, 357, 370, 439, 680, 1397
HinP1I	GCGC	6 cut(s)	189, 357, 370, 439, 680, 1397
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HpaII	CCGG	2 cut(s)	394, 1911
HphI	GGTGA	7 cut(s)	31, 78, 157, 647, 797, 1336, 1462
Hpy166II	GTNNAC	6 cut(s)	208, 286, 1108, 1134, 1228, 1439
Hpy188I	TCNGA	8 cut(s)	97, 352, 579, 1129, 1174, 1547, 1702, 1866
Hpy188III	TCNNGA	9 cut(s)	257, 778, 1180, 1199, 1318, 1499, 1911, 1970, 1994
Hpy8I	GTNNAC	6 cut(s)	208, 286, 1108, 1134, 1228, 1439
Hpy99I	CGWCG	4 cut(s)	212, 368, 1129, 1898
HpyCH4III	ACNGT	8 cut(s)	254, 494, 536, 802, 904, 1357, 1661, 1877
HpyCH4IV	ACGT	4 cut(s)	1022, 1176, 1446, 1562
HpyCH4V	TGCA	8 cut(s)	378, 746, 1074, 1374, 1439, 1519, 1905, 2005
HpyF10VI	GCNNNNNNNGC	3 cut(s)	246, 436, 1610
HpyF3I	CTNAG	4 cut(s)	272, 1049, 1287, 1719
HpySE526I	ACGT	4 cut(s)	1022, 1176, 1446, 1562
Hsp92I	GRCGYC	3 cut(s)	473, 680, 1176
HspAI	GCGC	6 cut(s)	189, 357, 370, 439, 680, 1397
KasI	GGCGCC	1 cut(s)	679
Kpn2I	TCCGGA	1 cut(s)	1910
Ksp22I	TGATCA	2 cut(s)	603, 1341
LmnI	GCTCC	2 cut(s)	1320, 1972
Lsp1109I	GCAGC	4 cut(s)	288, 1639, 1765, 1885
LweI	GCATC	6 cut(s)	288, 628, 970, 980, 1302, 1840
MaeI	CTAG	3 cut(s)	1166, 1236, 1844
MaeII	ACGT	4 cut(s)	1022, 1176, 1446, 1562
MaeIII	GTNAC	6 cut(s)	530, 904, 1115, 1450, 1558, 1978
MboII	GAAGA	8 cut(s)	158, 713, 800, 893, 910, 1503, 1724, 1829
MflI	RGATCY	1 cut(s)	1755
MhlI	GDGCHC	1 cut(s)	1441
MlsI	TGGCCA	2 cut(s)	336, 1747
MluCI	AATT	9 cut(s)	451, 484, 506, 685, 752, 1030, 1680, 1765, 2041
MluNI	TGGCCA	2 cut(s)	336, 1747
Mly113I	GGCGCC	1 cut(s)	680
MlyI	GAGTC	3 cut(s)	254, 293, 1006
MmeI	TCCRAC	3 cut(s)	327, 375, 1107
Mox20I	TGGCCA	2 cut(s)	336, 1747
MroI	TCCGGA	1 cut(s)	1910
MroXI	GAANNNNTTC	2 cut(s)	650, 1541
MscI	TGGCCA	2 cut(s)	336, 1747
MseI	TTAA	5 cut(s)	456, 483, 858, 1362, 1478
MslI	CAYNNNNRTG	1 cut(s)	201
Msp20I	TGGCCA	2 cut(s)	336, 1747
MspI	CCGG	2 cut(s)	394, 1911
MspR9I	CCNGG	2 cut(s)	394, 976
Mva1269I	GAATGC	3 cut(s)	15, 68, 586
MvaI	CCWGG	1 cut(s)	976
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	3 cut(s)	246, 436, 1610
NarI	GGCGCC	1 cut(s)	680
NciI	CCSGG	1 cut(s)	394
NlaIV	GGNNCC	2 cut(s)	681, 1968
NmuCI	GTSAC	4 cut(s)	530, 904, 1450, 1558
NspI	RCATGY	1 cut(s)	422
NspV	TTCGAA	1 cut(s)	2039
PagI	TCATGA	1 cut(s)	777
PcsI	WCGNNNNNNNCGW	2 cut(s)	294, 1692
PctI	GAATGC	3 cut(s)	15, 68, 586
PdmI	GAANNNNTTC	2 cut(s)	650, 1541
PfoI	TCCNGGA	1 cut(s)	974
PkrI	GCNGC	5 cut(s)	278, 814, 1654, 1780, 1900
PleI	GAGTC	3 cut(s)	254, 293, 1005
PluTI	GGCGCC	1 cut(s)	683
PpsI	GAGTC	3 cut(s)	254, 293, 1005
PpuMI	RGGWCCY	1 cut(s)	1144
PsiI	TTATAA	2 cut(s)	1245, 1881
Psp5II	RGGWCCY	1 cut(s)	1144
Psp6I	CCWGG	1 cut(s)	974
PspEI	GGTNACC	1 cut(s)	1450
PspFI	CCCAGC	1 cut(s)	1853
PspGI	CCWGG	1 cut(s)	974
PspN4I	GGNNCC	2 cut(s)	681, 1968
PspPI	GGNCC	2 cut(s)	1144, 2060
PspPPI	RGGWCCY	1 cut(s)	1144
PsrI	GAACNNNNNNTAC	2 cut(s)	1100, 1132
PstNI	CAGNNNCTG	2 cut(s)	1093, 1976
PsuI	RGATCY	1 cut(s)	1755
RsaI	GTAC	5 cut(s)	1133, 1407, 1565, 1575, 1663
RsaNI	GTAC	5 cut(s)	1132, 1406, 1564, 1574, 1662
RseI	CAYNNNNRTG	1 cut(s)	201
SalI	GTCGAC	1 cut(s)	206
SaqAI	TTAA	5 cut(s)	456, 483, 858, 1362, 1478
SatI	GCNGC	5 cut(s)	277, 813, 1653, 1779, 1899
Sau96I	GGNCC	2 cut(s)	1144, 2060
ScaI	AGTACT	1 cut(s)	1663
SchI	GAGTC	3 cut(s)	254, 293, 1006
ScrFI	CCNGG	2 cut(s)	394, 976
SduI	GDGCHC	1 cut(s)	1441
SfaNI	GCATC	6 cut(s)	288, 628, 970, 980, 1302, 1840
SfoI	GGCGCC	1 cut(s)	681
SfuI	TTCGAA	1 cut(s)	2039
SinI	GGWCC	1 cut(s)	1144
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	1497
SmoI	CTYRAG	1 cut(s)	1497
SpeI	ACTAGT	1 cut(s)	1843
Sse9I	AATT	9 cut(s)	451, 484, 506, 685, 752, 1030, 1680, 1765, 2041
SsiI	CCGC	9 cut(s)	110, 199, 220, 232, 238, 307, 328, 812, 878
SspDI	GGCGCC	1 cut(s)	679
SspMI	CTAG	3 cut(s)	1166, 1236, 1844
StyD4I	CCNGG	2 cut(s)	392, 974
TaaI	ACNGT	8 cut(s)	254, 494, 536, 802, 904, 1357, 1661, 1877
TaiI	ACGT	4 cut(s)	1025, 1179, 1449, 1565
TasI	AATT	9 cut(s)	451, 484, 506, 685, 752, 1030, 1680, 1765, 2041
TatI	WGTACW	3 cut(s)	1131, 1573, 1661
TauI	GCSGC	1 cut(s)	815
Tru1I	TTAA	5 cut(s)	456, 483, 858, 1362, 1478
Tru9I	TTAA	5 cut(s)	456, 483, 858, 1362, 1478
TscAI	CASTG	3 cut(s)	535, 1331, 1477
TseFI	GTSAC	4 cut(s)	530, 904, 1450, 1558
TseI	GCWGC	4 cut(s)	276, 1652, 1778, 1898
Tsp45I	GTSAC	4 cut(s)	530, 904, 1450, 1558
TspDTI	ATGAA	7 cut(s)	330, 672, 794, 876, 1854, 1947, 1964
TspGWI	ACGGA	2 cut(s)	1113, 1974
TspRI	CASTG	3 cut(s)	535, 1331, 1477
VneI	GTGCAC	1 cut(s)	1437
VpaK11BI	GGWCC	1 cut(s)	1144
XagI	CCTNNNNNAGG	1 cut(s)	1787
XapI	RAATTY	3 cut(s)	451, 685, 2041
XceI	RCATGY	1 cut(s)	422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	207
XmnI	GAANNNNTTC	2 cut(s)	650, 1541
XspI	CTAG	3 cut(s)	1166, 1236, 1844
ZraI	GACGTC	1 cut(s)	1177
ZrmI	AGTACT	1 cut(s)	1663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.