Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006735

Physical Location & Seq

Genomic Coordinates Forward (+)

1181312 .. 1183934

Gene Structure 2623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15910

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2082 bp

ATGTTCCTCACAACTCTCCCATCCACCAAAACCCCAATCACCCCCAAAACCCTAACCATCCCTCTCACCTTCTTCTTCACACACACCACCTTACCCTCTCACCACGAACAACCCCAAAACCAGCTCGACCAGCTCGACCAAATAAGCATAGACAACACACCATACTGGACCAAAACCATCCACGACCTCTGCACCCGCCACTGCAATGTCGACCAAGCCCTCCACCTCCTCGACCGCCTCCGCCTCCGTGGCTACCGCCCCAACCCGCTCAACCTCAGCAGCATCATCCACGCCCTCTGCGACTCCAGCCGCTTCGAAGAAGCCCACCATCGCTTCGCCCACTCCATCGACTCAGACTGCGTCCCTGACCAGCGCACCTGCAACGTCATCGTCGCTCGGCTACTCGATTCGGAAACCCCGCACAGCACGTTGGGTGTTCTTCGCGTTTTGAGTCCACTGAAGCCTGATTTTGTAGCCTCTTTGGTTAATTACAACCGTCTGATGGATCAGCTCTGCTCGCTCCGGCGGCCCAGTGAGGCTCATAGAGTGTTGTTTGACATGCTTATTAGAGGGCATTGCCCCAACGCGGTTTCTTACACTACATTGATTAACGGGTACTGCGGCGTTGGCGAGTTGGGTAATGCACACAAGGTGTTTGATGAAATGTGTGAGAGGGGTGTAGCGCCTAATTCGATGACTTATAGTGTGTTGATACGTGGCGTTCTTCGGAAGCGGGATATTGGGGGTGCTATGGAATTGATGGGAAGATTGTGGGAGACAATGAAGGGTGAAGATGACACGCTTGTGAAAAATGCGGCATTCTCGAATTTGATTGATTCTATGTGTAGAGAAGGGTATTTTCAAGAGGTTTTCGGTATTGCAGAAGATAGGCCACAGGGGCAGAGTGTGAATGAGGAGTTTGCTTATGGACAGATGATAGATTCGCTTTGTATAGCCGGAAGGCATCATGGGGCGTCGAGAATTGTGTACATCATGAGGCATAGAGGGTTTGTTCCACGCATAACGTCGTATAATTGTATCATACATGGACTGAGCAAGGATGGGGAGGGAGGTTGTATGAGAGCTTATCAGTTGTTGGAGGAAGGGATTGAGTTTGGTTACTTGCCGTCTGAGTACACTTACAAGGTTCTAGTGGAAGGTCTTTGCCAAGAATCCGACGTGGACAAGGCGCGGCAGGTTCTTCAATATATGTTAAAGAAGCAAAGAGTGGACAAAACCAGGATGTATAATATATATTTGAGAGCTCTATGTCGTGTTAATAACACGACTGAGCTTTTGAATGTGCTTGTTTCAATGCTCCAGACCGAGTGTCAGCCTGATGTGATCACCCTAAACATAGTTGTCAATGGGTTCTGCAAGATGGGGAGAGTGGAAGAAGCTTTAAAGGTACTGGATGATATGATGACTGGAAAATTTTGTGCGCCGAATGTAGTGACCTTCACAACTATCATTAATGGTTTGTTAAATGTTGGTAGAACGCAAGAAGCTCTTGGTATGTTGCGTGATGTAATGCCTCAGAAAGGTTTTCGCCCTAATGTTGTGACATATAATGCAATTCTTCGTGGTTTGTTTAAACTTAATCAAGGAAGGGAAGCAATGGACATTTTCAATGGCATGGTAATTGAGGGTGTGGCTGCTGATAGTACCACTTACACAATTATAATTGATGGGTTATGTGAGTCTGATCAGCTAGAAGAGGCTAAGAGGTTCTGGGATGAGGTTATTTGGCCCTCACAGATCCATGACAATTTTGTATACGCAGCCATCATCAAAGGGATTTGCCATTCAGGAAATTTTGATGAGGCATGTCATTTCCTTTACGAACTTGTAGACTCTGGGGTCTGTCCGAATATATTCAGTTACAACATTGTGATCAACACTGCTTACAAACTAGGTCTGAAGAAAGAGGCATATGAAGTTGTAAGAGAGATGAGAAGAAATGGGCTGGCTCCGGATTCTGTAACTTGGAGGATTCTTGACAAGTTACACAGCAACTCAAGAAAACAATATGGGGATGATGAGGCTTCAACTTTGCAATTCGGAAGTGGACCGCATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

693

Amino Acids

78.37

Weight (kDa)

6.16

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	161 - 207	7.2e-11	PPR repeat family
PPR_3	PF13812	183 - 238	1.2e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	190 - 222	2.2e-11	PPR repeat
PPR_2	PF13041	194 - 241	2.4e-17	PPR repeat family
PPR	PF01535	197 - 227	2e-07	PPR repeat
PPR_2	PF13041	339 - 390	9.3e-07	PPR repeat family
PPR_1	PF12854	373 - 404	1.3e-06	PPR repeat
PPR_2	PF13041	415 - 460	1.1e-08	PPR repeat family
PPR_1	PF12854	443 - 474	6.5e-13	PPR repeat
PPR_2	PF13041	446 - 495	8e-14	PPR repeat family
PPR	PF01535	449 - 475	3.7e-06	PPR repeat
PPR_3	PF13812	480 - 527	8.1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	482 - 532	1e-12	PPR repeat family
PPR_3	PF13812	510 - 563	9.8e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	518 - 566	2.7e-16	PPR repeat family
PPR_1	PF12854	550 - 580	2.2e-06	PPR repeat
PPR_2	PF13041	589 - 634	1.7e-08	PPR repeat family
PPR_2	PF13041	623 - 666	1.1e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18020
fragaria_vesca	FvH4_5g17250
malus_domestica	MD06G1231100.v1.1
prunus_persica	Prupe.5G232400_v2.0.a1
pyrus_communis	pycom06g20240
rosa_chinensis	RchiOBHm_Chr7g0178541
rosa_laevigata	RLG00000005439 RLG00000010173
rosa_multiflora	Rmu_sc0000775.1_g000015 Rmu_sc0000961.1_g000015 Rmu_sc0002421.1_g000004 Rmu_sc0003637.1_g000006 Rmu_sc0011483.1_g000001 Rmu_sc0016060.1_g000005 Rmu_ssc0000343.1_g000033
rosa_roxburghii	Rroxscaffold_3G00274830 Rroxscaffold_5G00333820
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh3CG367500 Rh4AG426400 Rh4DG434700 Rh7AG016400 Rh7BG015900 Rh7CG016600 Rh7DG016500
rosa_wichuraiana	Rw7G001300

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1682
AarI	CACCTGC	1 cut(s)	386
AasI	GACNNNNNNGTC	1 cut(s)	1859
Acc36I	ACCTGC	2 cut(s)	386, 1186
AccBSI	CCGCTC	1 cut(s)	268
AccI	GTMKAC	3 cut(s)	210, 1776, 1851
AccII	CGCG	3 cut(s)	444, 587, 1192
AccIII	TCCGGA	1 cut(s)	1972
AclWI	GGATC	2 cut(s)	513, 1753
AcsI	RAATTY	3 cut(s)	826, 1433, 1813
AcuI	CTGAAG	2 cut(s)	479, 1940
AcyI	GRCGYC	1 cut(s)	974
AdeI	CACNNNGTG	1 cut(s)	652
AfaI	GTAC	5 cut(s)	617, 989, 1136, 1410, 1666
AfiI	CCNNNNNNNGG	3 cut(s)	502, 586, 1541
AgsI	TTSAA	6 cut(s)	863, 1205, 1300, 1314, 1630, 2049
AhdI	GACNNNNNGTC	1 cut(s)	1329
AjiI	CACGTC	1 cut(s)	1180
AjnI	CCWGG	1 cut(s)	1238
AleI	CACNNNNGTG	1 cut(s)	803
AluBI	AGCT	9 cut(s)	124, 133, 511, 1085, 1265, 1294, 1400, 1508, 1711
AluI	AGCT	9 cut(s)	124, 133, 511, 1085, 1265, 1294, 1400, 1508, 1711
Alw21I	GWGCWC	1 cut(s)	1267
Alw26I	GTCTC	1 cut(s)	770
AlwI	GGATC	2 cut(s)	513, 1753
Aor13HI	TCCGGA	1 cut(s)	1972
AoxI	GGCC	3 cut(s)	527, 890, 1748
ApeKI	GCWGC	3 cut(s)	279, 1655, 1781
ApoI	RAATTY	3 cut(s)	826, 1433, 1813
ArsI	GACNNNNNNTTYG	2 cut(s)	1279, 1311
AseI	ATTAAT	1 cut(s)	1473
Asp700I	GAANNNNTTC	1 cut(s)	1874
AspLEI	GCGC	4 cut(s)	375, 685, 1192, 1444
AspS9I	GGNCC	4 cut(s)	168, 528, 1749, 2069
AsuHPI	GGTGA	5 cut(s)	31, 58, 92, 800, 1339
AsuII	TTCGAA	1 cut(s)	315
AvaII	GGWCC	2 cut(s)	168, 2069
BanII	GRGCYC	1 cut(s)	1267
Bbv12I	GWGCWC	1 cut(s)	1267
BbvCI	CCTCAGC	1 cut(s)	275
BbvI	GCAGC	3 cut(s)	291, 1642, 1793
BceAI	ACGGC	1 cut(s)	1111
BcgI	CGANNNNNNTGC	2 cut(s)	370, 404
BciT130I	CCWGG	1 cut(s)	1240
BclI	TGATCA	3 cut(s)	1344, 1705, 1893
BcoDI	GTCTC	1 cut(s)	770
BfaI	CTAG	3 cut(s)	1151, 1712, 1913
BfoI	RGCGCY	1 cut(s)	686
BfuAI	ACCTGC	2 cut(s)	386, 1186
BglI	GCCNNNNNGGC	2 cut(s)	249, 898
BisI	GCNGC	8 cut(s)	280, 310, 527, 622, 816, 1193, 1656, 1782
BlsI	GCNGC	8 cut(s)	281, 311, 528, 623, 817, 1194, 1657, 1783
Bme1390I	CCNGG	1 cut(s)	1240
Bme18I	GGWCC	2 cut(s)	168, 2069
BmeRI	GACNNNNNGTC	1 cut(s)	1329
BmgBI	CACGTC	1 cut(s)	1180
BmgT120I	GGNCC	4 cut(s)	168, 528, 1749, 2069
BmiI	GGNNCC	1 cut(s)	1971
BmrFI	CCNGG	1 cut(s)	1240
BmrI	ACTGGG	1 cut(s)	525
BmsI	GCATC	2 cut(s)	291, 973
BmuI	ACTGGG	1 cut(s)	525
BpmI	CTGGAG	2 cut(s)	289, 1304
Bpu10I	CCTNAGC	1 cut(s)	275
Bpu14I	TTCGAA	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	2002
BsaAI	YACGTR	1 cut(s)	716
BsaHI	GRCGYC	1 cut(s)	974
BsaJI	CCNNGG	1 cut(s)	247
BsaWI	WCCGGW	1 cut(s)	1972
Bsc4I	CCNNNNNNNGG	3 cut(s)	502, 586, 1541
Bse1I	ACTGG	4 cut(s)	170, 531, 1416, 1432
Bse3DI	GCAATG	3 cut(s)	211, 574, 1623
BseAI	TCCGGA	1 cut(s)	1972
BseBI	CCWGG	1 cut(s)	1240
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	9 cut(s)	20, 57, 177, 285, 1066, 1248, 1420, 1741, 2041
BseLI	CCNNNNNNNGG	3 cut(s)	502, 586, 1541
BseMI	GCAATG	3 cut(s)	211, 574, 1623
BseMII	CTCAG	6 cut(s)	289, 366, 1043, 1122, 1281, 1550
BseNI	ACTGG	4 cut(s)	170, 531, 1416, 1432
BseRI	GAGGAG	2 cut(s)	218, 929
BseXI	GCAGC	3 cut(s)	291, 1642, 1793
BsgI	GTGCAG	1 cut(s)	175
Bsh1236I	CGCG	3 cut(s)	444, 587, 1192
Bsh1285I	CGRYCG	1 cut(s)	235
BshFI	GGCC	3 cut(s)	529, 892, 1750
BsiEI	CGRYCG	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	1267
BsiSI	CCGG	3 cut(s)	523, 957, 1973
BslFI	GGGAC	1 cut(s)	347
BslI	CCNNNNNNNGG	3 cut(s)	502, 586, 1541
BsmAI	GTCTC	1 cut(s)	770
BsmFI	GGGAC	1 cut(s)	347
BsmI	GAATGC	1 cut(s)	818
BsnI	GGCC	3 cut(s)	529, 892, 1750
Bsp119I	TTCGAA	1 cut(s)	315
Bsp1286I	GDGCHC	1 cut(s)	1267
Bsp13I	TCCGGA	1 cut(s)	1972
Bsp1407I	TGTACA	1 cut(s)	987
Bsp143I	GATC	5 cut(s)	505, 1344, 1705, 1758, 1893
BspANI	GGCC	3 cut(s)	529, 892, 1750
BspCNI	CTCAG	6 cut(s)	288, 365, 1044, 1123, 1282, 1549
BspEI	TCCGGA	1 cut(s)	1972
BspFNI	CGCG	3 cut(s)	444, 587, 1192
BspHI	TCATGA	1 cut(s)	993
BspLI	GGNNCC	1 cut(s)	1971
BspMI	ACCTGC	2 cut(s)	386, 1186
BspPI	GGATC	2 cut(s)	513, 1753
BspT104I	TTCGAA	1 cut(s)	315
BsrBI	CCGCTC	1 cut(s)	268
BsrDI	GCAATG	3 cut(s)	211, 574, 1623
BsrGI	TGTACA	1 cut(s)	987
BsrI	ACTGG	4 cut(s)	170, 531, 1416, 1432
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	5 cut(s)	505, 1344, 1705, 1758, 1893
BssNAI	GTATAC	1 cut(s)	1777
BssNI	GRCGYC	1 cut(s)	974
Bst1107I	GTATAC	1 cut(s)	1777
Bst2UI	CCWGG	1 cut(s)	1240
Bst4CI	ACNGT	1 cut(s)	497
Bst6I	CTCTTC	1 cut(s)	1710
BstACI	GRCGYC	1 cut(s)	974
BstAUI	TGTACA	1 cut(s)	987
BstBAI	YACGTR	1 cut(s)	716
BstBI	TTCGAA	1 cut(s)	315
BstC8I	GCNNGC	2 cut(s)	518, 1968
BstDEI	CTNAG	7 cut(s)	275, 352, 1052, 1131, 1290, 1536, 1722
BstDSI	CCRYGG	1 cut(s)	247
BstENI	CCTNNNNNAGG	1 cut(s)	1539
BstF5I	GGATG	9 cut(s)	20, 57, 177, 285, 1066, 1248, 1420, 1741, 2041
BstFNI	CGCG	3 cut(s)	444, 587, 1192
BstH2I	RGCGCY	1 cut(s)	686
BstHHI	GCGC	4 cut(s)	375, 685, 1192, 1444
BstKTI	GATC	5 cut(s)	508, 1347, 1708, 1761, 1896
BstMAI	GTCTC	1 cut(s)	770
BstMBI	GATC	5 cut(s)	505, 1344, 1705, 1758, 1893
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	7 cut(s)	130, 249, 306, 517, 526, 627, 898
BstNI	CCWGG	1 cut(s)	1240
BstNSI	RCATGY	2 cut(s)	562, 1830
BstSCI	CCNGG	1 cut(s)	1238
BstUI	CGCG	3 cut(s)	444, 587, 1192
BstV1I	GCAGC	3 cut(s)	291, 1642, 1793
BstX2I	RGATCY	1 cut(s)	1758
BstYI	RGATCY	1 cut(s)	1758
BstZ17I	GTATAC	1 cut(s)	1777
BsuRI	GGCC	3 cut(s)	529, 892, 1750
BtgI	CCRYGG	1 cut(s)	247
BtgZI	GCGATG	1 cut(s)	314
BtrI	CACGTC	1 cut(s)	1180
BtsCI	GGATG	9 cut(s)	20, 57, 177, 285, 1066, 1248, 1420, 1741, 2041
BtsI	GCAGTG	2 cut(s)	199, 1899
BtsIMutI	CAGTG	4 cut(s)	199, 455, 538, 1899
BveI	ACCTGC	2 cut(s)	386, 1186
Cac8I	GCNNGC	2 cut(s)	518, 1968
CciI	TCATGA	1 cut(s)	993
CfoI	GCGC	4 cut(s)	375, 685, 1192, 1444
Cfr13I	GGNCC	4 cut(s)	168, 528, 1749, 2069
CseI	GACGC	2 cut(s)	349, 963
Csp6I	GTAC	5 cut(s)	616, 988, 1135, 1409, 1665
CviAII	CATG	8 cut(s)	559, 968, 994, 1046, 1636, 1763, 1827, 2075
CviQI	GTAC	5 cut(s)	616, 988, 1135, 1409, 1665
DdeI	CTNAG	7 cut(s)	275, 352, 1052, 1131, 1290, 1536, 1722
DpnI	GATC	5 cut(s)	507, 1346, 1707, 1760, 1895
DpnII	GATC	5 cut(s)	505, 1344, 1705, 1758, 1893
DraI	TTTAAA	2 cut(s)	1404, 1594
DraIII	CACNNNGTG	1 cut(s)	652
DrdI	GACNNNNNNGTC	1 cut(s)	1859
DriI	GACNNNNNGTC	1 cut(s)	1329
DseDI	GACNNNNNNGTC	1 cut(s)	1859
Eam1104I	CTCTTC	1 cut(s)	1710
Eam1105I	GACNNNNNGTC	1 cut(s)	1329
EarI	CTCTTC	1 cut(s)	1710
EciI	GGCGGA	1 cut(s)	230
Ecl136II	GAGCTC	1 cut(s)	1265
Eco24I	GRGCYC	1 cut(s)	1267
Eco47I	GGWCC	2 cut(s)	168, 2069
Eco53kI	GAGCTC	1 cut(s)	1265
Eco57I	CTGAAG	2 cut(s)	479, 1940
EcoICRI	GAGCTC	1 cut(s)	1265
EcoNI	CCTNNNNNAGG	1 cut(s)	1539
EcoRII	CCWGG	1 cut(s)	1238
EcoT38I	GRGCYC	1 cut(s)	1267
FaeI	CATG	8 cut(s)	562, 971, 997, 1049, 1639, 1766, 1830, 2078
FalI	AAGNNNNNCTT	2 cut(s)	1494, 1526
FaqI	GGGAC	1 cut(s)	347
FatI	CATG	8 cut(s)	558, 967, 993, 1045, 1635, 1762, 1826, 2074
FauI	CCCGC	4 cut(s)	203, 273, 426, 726
FauNDI	CATATG	1 cut(s)	1933
FbaI	TGATCA	3 cut(s)	1344, 1705, 1893
FblI	GTMKAC	3 cut(s)	210, 1776, 1851
Fnu4HI	GCNGC	8 cut(s)	280, 310, 527, 622, 816, 1193, 1656, 1782
FokI	GGATG	9 cut(s)	7, 44, 164, 272, 1073, 1255, 1427, 1748, 2048
FriOI	GRGCYC	1 cut(s)	1267
Fsp4HI	GCNGC	8 cut(s)	280, 310, 527, 622, 816, 1193, 1656, 1782
FspBI	CTAG	3 cut(s)	1151, 1712, 1913
GlaI	GCGC	4 cut(s)	374, 684, 1191, 1443
GluI	GCNGC	8 cut(s)	280, 310, 527, 622, 816, 1193, 1656, 1782
GsuI	CTGGAG	2 cut(s)	289, 1304
HaeII	RGCGCY	1 cut(s)	686
HaeIII	GGCC	3 cut(s)	529, 892, 1750
HapII	CCGG	3 cut(s)	523, 957, 1973
HgaI	GACGC	2 cut(s)	349, 963
HhaI	GCGC	4 cut(s)	375, 685, 1192, 1444
Hin1I	GRCGYC	1 cut(s)	974
Hin1II	CATG	8 cut(s)	562, 971, 997, 1049, 1639, 1766, 1830, 2078
Hin6I	GCGC	4 cut(s)	373, 683, 1190, 1442
HinP1I	GCGC	4 cut(s)	373, 683, 1190, 1442
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	1 cut(s)	1398
HpaII	CCGG	3 cut(s)	523, 957, 1973
HphI	GGTGA	5 cut(s)	31, 58, 92, 800, 1339
Hpy166II	GTNNAC	9 cut(s)	211, 455, 988, 1137, 1183, 1231, 1777, 1852, 2069
Hpy188III	TCNNGA	9 cut(s)	823, 863, 978, 994, 1321, 1809, 1973, 1997, 2019
Hpy8I	GTNNAC	9 cut(s)	211, 455, 988, 1137, 1183, 1231, 1777, 1852, 2069
Hpy99I	CGWCG	4 cut(s)	395, 979, 1030, 1181
HpyAV	CCTTC	8 cut(s)	79, 778, 845, 954, 1097, 1151, 1468, 1602
HpyCH4III	ACNGT	1 cut(s)	497
HpyCH4IV	ACGT	5 cut(s)	384, 428, 715, 1025, 1179
HpyCH4V	TGCA	8 cut(s)	192, 204, 381, 644, 881, 1377, 1574, 2056
HpyF10VI	GCNNNNNNNGC	7 cut(s)	130, 249, 306, 517, 526, 627, 898
HpyF3I	CTNAG	7 cut(s)	275, 352, 1052, 1131, 1290, 1536, 1722
HpySE526I	ACGT	5 cut(s)	384, 428, 715, 1025, 1179
Hsp92I	GRCGYC	1 cut(s)	974
Hsp92II	CATG	8 cut(s)	562, 971, 997, 1049, 1639, 1766, 1830, 2078
HspAI	GCGC	4 cut(s)	373, 683, 1190, 1442
Kpn2I	TCCGGA	1 cut(s)	1972
Ksp22I	TGATCA	3 cut(s)	1344, 1705, 1893
Kzo9I	GATC	5 cut(s)	505, 1344, 1705, 1758, 1893
LmnI	GCTCC	3 cut(s)	525, 1323, 1975
Lsp1109I	GCAGC	3 cut(s)	291, 1642, 1793
LweI	GCATC	2 cut(s)	291, 973
MaeI	CTAG	3 cut(s)	1151, 1712, 1913
MaeII	ACGT	5 cut(s)	384, 428, 715, 1025, 1179
MaeIII	GTNAC	6 cut(s)	1118, 1453, 1561, 1880, 1981, 2004
MalI	GATC	5 cut(s)	507, 1346, 1707, 1760, 1895
MbiI	CCGCTC	1 cut(s)	268
MboI	GATC	5 cut(s)	505, 1344, 1705, 1758, 1893
MflI	RGATCY	1 cut(s)	1758
MhlI	GDGCHC	1 cut(s)	1267
MlyI	GAGTC	5 cut(s)	296, 344, 460, 1709, 1847
MmeI	TCCRAC	2 cut(s)	1077, 1200
MroI	TCCGGA	1 cut(s)	1972
MroXI	GAANNNNTTC	1 cut(s)	1874
MseI	TTAA	9 cut(s)	486, 609, 1214, 1278, 1403, 1473, 1484, 1593, 1599
MslI	CAYNNNNRTG	2 cut(s)	204, 803
MspI	CCGG	3 cut(s)	523, 957, 1973
MspR9I	CCNGG	1 cut(s)	1240
MssI	GTTTAAAC	1 cut(s)	1594
Mva1269I	GAATGC	1 cut(s)	818
MvaI	CCWGG	1 cut(s)	1240
MvnI	CGCG	3 cut(s)	444, 587, 1192
MwoI	GCNNNNNNNGC	7 cut(s)	130, 249, 306, 517, 526, 627, 898
NdeI	CATATG	1 cut(s)	1933
NdeII	GATC	5 cut(s)	505, 1344, 1705, 1758, 1893
NlaIII	CATG	8 cut(s)	562, 971, 997, 1049, 1639, 1766, 1830, 2078
NlaIV	GGNNCC	1 cut(s)	1971
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	2 cut(s)	1453, 1561
NspI	RCATGY	2 cut(s)	562, 1830
NspV	TTCGAA	1 cut(s)	315
OliI	CACNNNNGTG	1 cut(s)	803
PagI	TCATGA	1 cut(s)	993
PaqCI	CACCTGC	1 cut(s)	386
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 297
PctI	GAATGC	1 cut(s)	818
PdmI	GAANNNNTTC	1 cut(s)	1874
PfeI	GAWTC	6 cut(s)	407, 836, 941, 1172, 1976, 1993
PflFI	GACNNNGTC	1 cut(s)	359
PkrI	GCNGC	8 cut(s)	281, 311, 528, 623, 817, 1194, 1657, 1783
PleI	GAGTC	5 cut(s)	296, 344, 459, 1708, 1847
PmeI	GTTTAAAC	1 cut(s)	1594
PpsI	GAGTC	5 cut(s)	296, 344, 459, 1708, 1847
Ppu21I	YACGTR	1 cut(s)	716
PshBI	ATTAAT	1 cut(s)	1473
PsiI	TTATAA	1 cut(s)	1682
Psp124BI	GAGCTC	1 cut(s)	1267
Psp6I	CCWGG	1 cut(s)	1238
PspGI	CCWGG	1 cut(s)	1238
PspN4I	GGNNCC	1 cut(s)	1971
PspPI	GGNCC	4 cut(s)	168, 528, 1749, 2069
PsuI	RGATCY	1 cut(s)	1758
PsyI	GACNNNGTC	1 cut(s)	359
RsaI	GTAC	5 cut(s)	617, 989, 1136, 1410, 1666
RsaNI	GTAC	5 cut(s)	616, 988, 1135, 1409, 1665
RseI	CAYNNNNRTG	2 cut(s)	204, 803
SacI	GAGCTC	1 cut(s)	1267
SalI	GTCGAC	1 cut(s)	209
SaqAI	TTAA	9 cut(s)	486, 609, 1214, 1278, 1403, 1473, 1484, 1593, 1599
SatI	GCNGC	8 cut(s)	280, 310, 527, 622, 816, 1193, 1656, 1782
Sau3AI	GATC	5 cut(s)	505, 1344, 1705, 1758, 1893
Sau96I	GGNCC	4 cut(s)	168, 528, 1749, 2069
SchI	GAGTC	5 cut(s)	296, 344, 460, 1709, 1847
ScrFI	CCNGG	1 cut(s)	1240
SduI	GDGCHC	1 cut(s)	1267
SfaNI	GCATC	2 cut(s)	291, 973
SfuI	TTCGAA	1 cut(s)	315
SinI	GGWCC	2 cut(s)	168, 2069
SmiMI	CAYNNNNRTG	2 cut(s)	204, 803
SmlI	CTYRAG	1 cut(s)	2017
SmoI	CTYRAG	1 cut(s)	2017
SspMI	CTAG	3 cut(s)	1151, 1712, 1913
SstI	GAGCTC	1 cut(s)	1267
StyD4I	CCNGG	1 cut(s)	1238
TaaI	ACNGT	1 cut(s)	497
TaiI	ACGT	5 cut(s)	387, 431, 718, 1028, 1182
TaqII	GACCGA	1 cut(s)	1340
TatI	WGTACW	2 cut(s)	987, 1134
TauI	GCSGC	5 cut(s)	312, 529, 624, 818, 1195
TfiI	GAWTC	6 cut(s)	407, 836, 941, 1172, 1976, 1993
Tru1I	TTAA	9 cut(s)	486, 609, 1214, 1278, 1403, 1473, 1484, 1593, 1599
Tru9I	TTAA	9 cut(s)	486, 609, 1214, 1278, 1403, 1473, 1484, 1593, 1599
TscAI	CASTG	4 cut(s)	206, 462, 538, 1906
TseFI	GTSAC	2 cut(s)	1453, 1561
TseI	GCWGC	3 cut(s)	279, 1655, 1781
Tsp45I	GTSAC	2 cut(s)	1453, 1561
TspDTI	ATGAA	3 cut(s)	675, 797, 1950
TspGWI	ACGGA	1 cut(s)	236
TspRI	CASTG	4 cut(s)	206, 462, 538, 1906
Tth111I	GACNNNGTC	1 cut(s)	359
VpaK11BI	GGWCC	2 cut(s)	168, 2069
VspI	ATTAAT	1 cut(s)	1473
XagI	CCTNNNNNAGG	1 cut(s)	1539
XapI	RAATTY	3 cut(s)	826, 1433, 1813
XceI	RCATGY	2 cut(s)	562, 1830
XmiI	GTMKAC	3 cut(s)	210, 1776, 1851
XmnI	GAANNNNTTC	1 cut(s)	1874
XspI	CTAG	3 cut(s)	1151, 1712, 1913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.