AT1G73640

RAB GTPase homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011926
Physical Location & Seq
Forward (+)
27686672 .. 27688127
1456 bp
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UTR
Exon/CDS
Intron
AT1G73640.1

Sequence Viewer

Length: 702 bp
ATGGCAGAAGATACGTACGAGGAAGAGTGCGACTACTTGTTTAAGGCGGTGTTGATCGGAGACTCAGCCGTCGGAAAATCAAACCTCTTGTCTAGATTTTCTAAAGACGAGTTCCGGTTTGACTCTAAACCAACCATCGGAGTAGAGTTTGCTTACCGGAATGTTCACGTCGGAGATAAAATCATCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAAAGATTTCGAGCAATCACAAGTTCGTACTACCGTGGAGCATTAGGGGCATTACTGATTTACGACATCACTAGACGAACAACTTTCGACAACATCAAGAAATGGCTTTTCGAGCTTAGAGACTTCGCCAATCCCGAAACCGTCGTTGTCCTCGTCGGAAACAAATCTGATCTCCGACAATCTAGAGAAGTTGAAGAAGACGAGGGTAAGACTCTAGCAGAATCAGAAGGTCTCTACTTCCTCGAGACTTCGGCTTTAGAGAATGTTAACGTCGAAGAAGCGTTTCTAGTGATGATCGGACGGATACATGAGGTTGTTACTCAGAGGATAGCTTCGGAAAACAAATCCAACGGTGCTGCGACGCCTCACATTAACGGTAATGGGAACGGTACGGTCCTTCCGGTTGGTAAAGAAATTGTGAATATACACGAAGTCACTGCTACTCAACCCTTATTAAGCTCATCTTCCAACTGTTGTTTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0071944 GO:0097708
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ras

Protein Analysis

233

Amino Acids

26.04

Weight (kDa)

5.08

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arf PF00025 14 - 166 1.6e-12 ADP-ribosylation factor family
Ras PF00071 15 - 174 3.2e-59 Ras family
Roc PF08477 15 - 129 1.1e-32 Ras of Complex, Roc, domain of DAPkinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011926)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18200 AT1G73640
fragaria_vesca FvH4_5g17230
malus_domestica MD06G1230900.v1.1 MD14G1235500.v1.1
prunus_persica Prupe.5G232200_v2.0.a1
pyrus_communis pycom06g20230 pycom14g19640
rosa_chinensis RchiOBHm_Chr7g0178561
rosa_laevigata RLG00000005437
rosa_multiflora Rmu_sc0012505.1_g000002 Rmu_sc0021447.1_g000001
rosa_roxburghii Rroxscaffold_3G00274810
rosa_rugosa Rorug06G0417900
rosa_samantha Rh7AG016600 Rh7BG016100 Rh7CG016800 Rh7DG016700
rosa_wichuraiana Rw7G001320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 68
AciI CCGC 2 cut(s) 47, 207
AcoI YGGCCR 1 cut(s) 211
AcyI GRCGYC 1 cut(s) 578
AfaI GTAC 3 cut(s) 17, 245, 607
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 2 cut(s) 410, 697
AjiI CACGTC 1 cut(s) 169
AjuI GAANNNNNNNTTGG 3 cut(s) 207, 239, 677
AluBI AGCT 3 cut(s) 331, 548, 675
AluI AGCT 3 cut(s) 331, 548, 675
Alw26I GTCTC 4 cut(s) 54, 330, 452, 455
Ama87I CYCGRG 1 cut(s) 458
AoxI GGCC 1 cut(s) 211
ApeKI GCWGC 1 cut(s) 572
ArsI GACNNNNNNTTYG 2 cut(s) 74, 106
Asp700I GAANNNNTTC 2 cut(s) 222, 498
AspS9I GGNCC 1 cut(s) 610
AvaI CYCGRG 1 cut(s) 458
AvaII GGWCC 1 cut(s) 610
BbsI GAAGAC 1 cut(s) 420
BbvI GCAGC 1 cut(s) 559
BccI CCATC 1 cut(s) 143
BceAI ACGGC 1 cut(s) 53
BcgI CGANNNNNNTGC 2 cut(s) 635, 669
BciVI GTATCC 1 cut(s) 513
BcoDI GTCTC 4 cut(s) 54, 330, 452, 455
BfaI CTAG 5 cut(s) 93, 288, 399, 431, 503
BfuI GTATCC 1 cut(s) 513
BisI GCNGC 1 cut(s) 573
BlsI GCNGC 1 cut(s) 574
Bme18I GGWCC 1 cut(s) 610
BmeT110I CYCGRG 1 cut(s) 458
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 610
BpiI GAAGAC 1 cut(s) 420
BsaAI YACGTR 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 578
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 1 cut(s) 250
BsaWI WCCGGW 3 cut(s) 114, 156, 616
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse118I RCCGGY 1 cut(s) 209
BseDI CCNNGG 1 cut(s) 250
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMII CTCAG 3 cut(s) 78, 206, 551
BseXI GCAGC 1 cut(s) 559
BshFI GGCC 1 cut(s) 213
BsiHKCI CYCGRG 1 cut(s) 458
BsiSI CCGG 4 cut(s) 115, 157, 210, 617
BsiWI CGTACG 1 cut(s) 15
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 4 cut(s) 54, 330, 452, 455
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 1 cut(s) 213
Bso31I GGTCTC 1 cut(s) 452
BsoBI CYCGRG 1 cut(s) 458
Bsp143I GATC 3 cut(s) 54, 385, 510
BspACI CCGC 2 cut(s) 47, 207
BspANI GGCC 1 cut(s) 213
BspCNI CTCAG 3 cut(s) 77, 205, 550
BspTNI GGTCTC 1 cut(s) 452
BsrFI RCCGGY 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 1 cut(s) 250
BssMI GATC 3 cut(s) 54, 385, 510
BssNI GRCGYC 1 cut(s) 578
Bst4CI ACNGT 7 cut(s) 251, 358, 569, 593, 605, 610, 689
Bst6I CTCTTC 1 cut(s) 18
BstACI GRCGYC 1 cut(s) 578
BstBAI YACGTR 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 4 cut(s) 64, 192, 332, 537
BstDSI CCRYGG 1 cut(s) 250
BstKTI GATC 3 cut(s) 57, 388, 513
BstMAI GTCTC 4 cut(s) 54, 330, 452, 455
BstMBI GATC 3 cut(s) 54, 385, 510
BstMWI GCNNNNNNNGC 2 cut(s) 263, 328
BstSNI TACGTA 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 559
BstV2I GAAGAC 1 cut(s) 420
BsuI GTATCC 1 cut(s) 513
BsuRI GGCC 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 250
BtrI CACGTC 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 651
BtsIMutI CAGTG 1 cut(s) 651
Cac8I GCNNGC 1 cut(s) 211
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 610
CseI GACGC 1 cut(s) 586
Csp6I GTAC 3 cut(s) 16, 244, 606
CviAII CATG 1 cut(s) 524
CviJI RGCY 8 cut(s) 68, 191, 213, 322, 331, 470, 548, 675
CviKI_1 RGCY 8 cut(s) 68, 191, 213, 322, 331, 470, 548, 675
CviQI GTAC 3 cut(s) 16, 244, 606
DdeI CTNAG 4 cut(s) 64, 192, 332, 537
DpnI GATC 3 cut(s) 56, 387, 512
DpnII GATC 3 cut(s) 54, 385, 510
DrdI GACNNNNNNGTC 1 cut(s) 68
DseDI GACNNNNNNGTC 1 cut(s) 68
EaeI YGGCCR 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco105I TACGTA 1 cut(s) 15
Eco31I GGTCTC 1 cut(s) 452
Eco47I GGWCC 1 cut(s) 610
Eco88I CYCGRG 1 cut(s) 458
FaeI CATG 1 cut(s) 527
FaiI YATR 2 cut(s) 525, 641
FalI AAGNNNNNCTT 2 cut(s) 664, 696
FaqI GGGAC 1 cut(s) 215
FatI CATG 1 cut(s) 523
Fnu4HI GCNGC 1 cut(s) 573
Fsp4HI GCNGC 1 cut(s) 573
FspBI CTAG 5 cut(s) 93, 288, 399, 431, 503
GluI GCNGC 1 cut(s) 573
HaeIII GGCC 1 cut(s) 213
HapII CCGG 4 cut(s) 115, 157, 210, 617
HgaI GACGC 1 cut(s) 586
Hin1I GRCGYC 1 cut(s) 578
Hin1II CATG 1 cut(s) 527
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 4 cut(s) 62, 122, 427, 437
HpaI GTTAAC 1 cut(s) 484
HpaII CCGG 4 cut(s) 115, 157, 210, 617
Hpy166II GTNNAC 2 cut(s) 166, 484
Hpy188III TCNNGA 5 cut(s) 93, 313, 350, 399, 460
Hpy8I GTNNAC 2 cut(s) 166, 484
Hpy99I CGWCG 6 cut(s) 74, 173, 362, 374, 491, 580
HpyAV CCTTC 2 cut(s) 437, 623
HpyCH4III ACNGT 7 cut(s) 251, 358, 569, 593, 605, 610, 689
HpyCH4IV ACGT 3 cut(s) 14, 168, 486
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 328
HpyF3I CTNAG 4 cut(s) 64, 192, 332, 537
HpySE526I ACGT 3 cut(s) 14, 168, 486
Hsp92I GRCGYC 1 cut(s) 578
Hsp92II CATG 1 cut(s) 527
KroI GCCGGC 1 cut(s) 209
KroNI GCCGGC 1 cut(s) 211
KspAI GTTAAC 1 cut(s) 484
Kzo9I GATC 3 cut(s) 54, 385, 510
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 4 cut(s) 128, 170, 223, 630
Lsp1109I GCAGC 1 cut(s) 559
MaeI CTAG 5 cut(s) 93, 288, 399, 431, 503
MaeII ACGT 3 cut(s) 14, 168, 486
MaeIII GTNAC 2 cut(s) 532, 649
MalI GATC 3 cut(s) 56, 387, 512
MboI GATC 3 cut(s) 54, 385, 510
MboII GAAGA 6 cut(s) 20, 35, 422, 425, 503, 672
MluCI AATT 1 cut(s) 630
MlyI GAGTC 3 cut(s) 56, 116, 421
MmeI TCCRAC 5 cut(s) 52, 151, 352, 415, 588
MnlI CCTC 8 cut(s) 13, 95, 377, 412, 467, 520, 534, 591
MroNI GCCGGC 1 cut(s) 209
MroXI GAANNNNTTC 2 cut(s) 222, 498
MseI TTAA 4 cut(s) 42, 483, 588, 671
MspI CCGG 4 cut(s) 115, 157, 210, 617
MwoI GCNNNNNNNGC 2 cut(s) 263, 328
NaeI GCCGGC 1 cut(s) 211
NdeII GATC 3 cut(s) 54, 385, 510
NgoMIV GCCGGC 1 cut(s) 209
NlaIII CATG 1 cut(s) 527
NmuCI GTSAC 1 cut(s) 649
PaeR7I CTCGAG 1 cut(s) 458
PcsI WCGNNNNNNNCGW 2 cut(s) 348, 366
PdiI GCCGGC 1 cut(s) 211
PdmI GAANNNNTTC 2 cut(s) 222, 498
PfeI GAWTC 1 cut(s) 437
Pfl23II CGTACG 1 cut(s) 15
PkrI GCNGC 1 cut(s) 574
PleI GAGTC 3 cut(s) 56, 116, 421
PpsI GAGTC 3 cut(s) 56, 116, 421
Ppu21I YACGTR 1 cut(s) 15
PspLI CGTACG 1 cut(s) 15
PspPI GGNCC 1 cut(s) 610
RsaI GTAC 3 cut(s) 17, 245, 607
RsaNI GTAC 3 cut(s) 16, 244, 606
SaqAI TTAA 4 cut(s) 42, 483, 588, 671
SatI GCNGC 1 cut(s) 573
Sau3AI GATC 3 cut(s) 54, 385, 510
Sau96I GGNCC 1 cut(s) 610
SchI GAGTC 3 cut(s) 56, 116, 421
SetI ASST 9 cut(s) 17, 87, 171, 333, 448, 489, 531, 550, 677
Sfr274I CTCGAG 1 cut(s) 458
SinI GGWCC 1 cut(s) 610
SlaI CTCGAG 1 cut(s) 458
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
SnaBI TACGTA 1 cut(s) 15
Sse9I AATT 1 cut(s) 630
SsiI CCGC 2 cut(s) 47, 207
SspMI CTAG 5 cut(s) 93, 288, 399, 431, 503
TaaI ACNGT 7 cut(s) 251, 358, 569, 593, 605, 610, 689
TaiI ACGT 3 cut(s) 17, 171, 489
TaqI TCGA 5 cut(s) 226, 303, 327, 459, 489
TasI AATT 1 cut(s) 630
TfiI GAWTC 1 cut(s) 437
Tru1I TTAA 4 cut(s) 42, 483, 588, 671
Tru9I TTAA 4 cut(s) 42, 483, 588, 671
TscAI CASTG 1 cut(s) 658
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 1 cut(s) 572
Tsp45I GTSAC 1 cut(s) 649
TspGWI ACGGA 1 cut(s) 532
TspRI CASTG 1 cut(s) 658
VpaK11BI GGWCC 1 cut(s) 610
XbaI TCTAGA 2 cut(s) 92, 398
XhoI CTCGAG 1 cut(s) 458
XmnI GAANNNNTTC 2 cut(s) 222, 498
XspI CTAG 5 cut(s) 93, 288, 399, 431, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.