Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021447.1

Orthogroup ID

OG0011926

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1413

Gene Structure 1413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021447.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

caaatatgggacactgccggccaagaaagattcagagcgatcaccagttcatactaccgtggagcgcttggttcgatactagtgtatgacataactcggcgaaaatcctttgagaatgtggagaaatggttgcgtgagctccgggagtatggtaattcggatatggttattgttcttgtaggaaacaaattggatttgagccactcgagagaggtcaccgaggaagaaggtaaaaattttgcggaggcggaagggatatgtttcatggaaacttcggctctagagaatgtgaatgttgacagactttttttggatatgatttctaagattcatgaaataacgagccacaagagtttggacaccaaaatggatgatcaaactagtgcgagtcttcacgctgcgaaagaaatcattcatatcgatgatgataatgaagtcacggctactaaacaatctagttattgttgctcgagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0012505 GO:0016020 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0071944 GO:0097708

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ras

Protein Analysis

158

Amino Acids

18.06

Weight (kDa)

5.03

Isoelectric Point (pI)

35.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18200 AT1G73640
fragaria_vesca	FvH4_5g17230
malus_domestica	MD06G1230900.v1.1 MD14G1235500.v1.1
prunus_persica	Prupe.5G232200_v2.0.a1
pyrus_communis	pycom06g20230 pycom14g19640
rosa_chinensis	RchiOBHm_Chr7g0178561
rosa_laevigata	RLG00000005437
rosa_multiflora	Rmu_sc0012505.1_g000002 Rmu_sc0021447.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274810
rosa_rugosa	Rorug06G0417900
rosa_samantha	Rh7AG016600 Rh7BG016100 Rh7CG016800 Rh7DG016700
rosa_wichuraiana	Rw7G001320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	242, 248
AcoI	YGGCCR	1 cut(s)	19
AcsI	RAATTY	1 cut(s)	235
AfeI	AGCGCT	1 cut(s)	66
AhlI	ACTAGT	2 cut(s)	79, 380
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
Alw21I	GWGCWC	1 cut(s)	141
Ama87I	CYCGRG	2 cut(s)	205, 469
Aor51HI	AGCGCT	1 cut(s)	66
AoxI	GGCC	1 cut(s)	19
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	1 cut(s)	235
Asp700I	GAANNNNTTC	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	67
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	34, 208
AvaI	CYCGRG	2 cut(s)	205, 469
BaeI	ACNNNNGTAYC	2 cut(s)	68, 101
BanII	GRGCYC	1 cut(s)	141
BbsI	GAAGAC	1 cut(s)	383
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	385
BceAI	ACGGC	1 cut(s)	456
BclI	TGATCA	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	143
BcuI	ACTAGT	2 cut(s)	79, 380
BfaI	CTAG	4 cut(s)	80, 281, 381, 456
BfoI	RGCGCY	1 cut(s)	68
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	143
BmeT110I	CYCGRG	2 cut(s)	205, 469
BmrFI	CCNGG	1 cut(s)	143
BpiI	GAAGAC	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	143
Bsa29I	ATCGAT	1 cut(s)	420
BsaJI	CCNNGG	2 cut(s)	58, 219
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	1 cut(s)	45
BseCI	ATCGAT	1 cut(s)	420
BseDI	CCNNGG	2 cut(s)	58, 219
BseGI	GGATG	1 cut(s)	376
BseNI	ACTGG	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	385
BshFI	GGCC	1 cut(s)	21
BshVI	ATCGAT	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	141
BsiHKCI	CYCGRG	2 cut(s)	205, 469
BsiSI	CCGG	2 cut(s)	18, 142
BslFI	GGGAC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	21
BsoBI	CYCGRG	2 cut(s)	205, 469
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	39, 373
BspACI	CCGC	2 cut(s)	242, 248
BspANI	GGCC	1 cut(s)	21
BspDI	ATCGAT	1 cut(s)	420
BspHI	TCATGA	1 cut(s)	331
BsrFI	RCCGGY	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	45
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	2 cut(s)	58, 219
BssMI	GATC	2 cut(s)	39, 373
Bst4CI	ACNGT	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	324
BstDSI	CCRYGG	1 cut(s)	58
BstEII	GGTNACC	1 cut(s)	214
BstF5I	GGATG	1 cut(s)	376
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	2 cut(s)	42, 376
BstMBI	GATC	2 cut(s)	39, 373
BstPI	GGTNACC	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	385
BstV2I	GAAGAC	1 cut(s)	383
Bsu15I	ATCGAT	1 cut(s)	420
BsuRI	GGCC	1 cut(s)	21
BsuTUI	ATCGAT	1 cut(s)	420
BtgI	CCRYGG	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	376
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	19
CciI	TCATGA	1 cut(s)	331
CfoI	GCGC	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	17
ClaI	ATCGAT	1 cut(s)	420
CviAII	CATG	2 cut(s)	265, 332
CviJI	RGCY	6 cut(s)	21, 139, 201, 278, 345, 443
CviKI_1	RGCY	6 cut(s)	21, 139, 201, 278, 345, 443
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	2 cut(s)	41, 375
DpnII	GATC	2 cut(s)	39, 373
EaeI	YGGCCR	1 cut(s)	19
EciI	GGCGGA	1 cut(s)	263
Ecl136II	GAGCTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	141
Eco47III	AGCGCT	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	139
Eco88I	CYCGRG	2 cut(s)	205, 469
Eco91I	GGTNACC	1 cut(s)	214
EcoICRI	GAGCTC	1 cut(s)	139
EcoO65I	GGTNACC	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	141
FaeI	CATG	2 cut(s)	268, 335
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	2 cut(s)	264, 331
FbaI	TGATCA	1 cut(s)	373
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	1 cut(s)	383
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	399
FspBI	CTAG	4 cut(s)	80, 281, 381, 456
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	1 cut(s)	399
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	2 cut(s)	18, 142
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	268, 335
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	3 cut(s)	30, 328, 388
HpaII	CCGG	2 cut(s)	18, 142
HphI	GGTGA	2 cut(s)	34, 208
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	2 cut(s)	35, 160
Hpy188III	TCNNGA	4 cut(s)	207, 281, 332, 471
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	2 cut(s)	221, 245
HpyCH4III	ACNGT	1 cut(s)	59
HpyF3I	CTNAG	1 cut(s)	324
Hsp92II	CATG	2 cut(s)	268, 335
HspAI	GCGC	1 cut(s)	65
KroI	GCCGGC	1 cut(s)	17
KroNI	GCCGGC	1 cut(s)	19
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	2 cut(s)	39, 373
LmnI	GCTCC	2 cut(s)	62, 144
LpnPI	CCDG	3 cut(s)	31, 58, 155
Lsp1109I	GCAGC	1 cut(s)	385
MaeI	CTAG	4 cut(s)	80, 281, 381, 456
MaeIII	GTNAC	2 cut(s)	214, 436
MalI	GATC	2 cut(s)	41, 375
MboI	GATC	2 cut(s)	39, 373
MboII	GAAGA	2 cut(s)	236, 383
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	3 cut(s)	154, 188, 235
MlyI	GAGTC	1 cut(s)	397
MnlI	CCTC	3 cut(s)	205, 214, 238
MroNI	GCCGGC	1 cut(s)	17
MroXI	GAANNNNTTC	1 cut(s)	411
MslI	CAYNNNNRTG	2 cut(s)	365, 420
MspI	CCGG	2 cut(s)	18, 142
MspR9I	CCNGG	1 cut(s)	143
NaeI	GCCGGC	1 cut(s)	19
NciI	CCSGG	1 cut(s)	143
NdeII	GATC	2 cut(s)	39, 373
NgoMIV	GCCGGC	1 cut(s)	17
NlaIII	CATG	2 cut(s)	268, 335
NmeAIII	GCCGAG	1 cut(s)	76
NmuCI	GTSAC	2 cut(s)	214, 436
PaeR7I	CTCGAG	2 cut(s)	205, 469
PagI	TCATGA	1 cut(s)	331
PdiI	GCCGGC	1 cut(s)	19
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	2 cut(s)	30, 328
PfoI	TCCNGGA	1 cut(s)	141
PkrI	GCNGC	1 cut(s)	400
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	141
PspEI	GGTNACC	1 cut(s)	214
RseI	CAYNNNNRTG	2 cut(s)	365, 420
SacI	GAGCTC	1 cut(s)	141
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	2 cut(s)	39, 373
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	3 cut(s)	141, 216, 232
Sfr274I	CTCGAG	2 cut(s)	205, 469
SlaI	CTCGAG	2 cut(s)	205, 469
SmiMI	CAYNNNNRTG	2 cut(s)	365, 420
SmlI	CTYRAG	2 cut(s)	205, 469
SmoI	CTYRAG	2 cut(s)	205, 469
SpeI	ACTAGT	2 cut(s)	79, 380
Sse9I	AATT	3 cut(s)	154, 188, 235
SsiI	CCGC	2 cut(s)	242, 248
SspMI	CTAG	4 cut(s)	80, 281, 381, 456
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	4 cut(s)	74, 206, 420, 470
TasI	AATT	3 cut(s)	154, 188, 235
TfiI	GAWTC	2 cut(s)	30, 328
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	2 cut(s)	214, 436
TseI	GCWGC	1 cut(s)	398
Tsp45I	GTSAC	2 cut(s)	214, 436
TspDTI	ATGAA	6 cut(s)	39, 253, 320, 348, 404, 447
TspRI	CASTG	1 cut(s)	19
XapI	RAATTY	1 cut(s)	235
XbaI	TCTAGA	1 cut(s)	280
XhoI	CTCGAG	2 cut(s)	205, 469
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	4 cut(s)	80, 281, 381, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.