Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014110

Physical Location & Seq

Genomic Coordinates Forward (+)

6348048 .. 6352010

Gene Structure 3963 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G18450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGTACGGCGGAGATGAAGTGTCAGCTATTGTGGTTGACTTGGGTTCGCACACTTGCAAGGCTGGTTACGCCGGTGAAGATGCTCCCAAGGCCGTTTTCCCTTCCGTTATTGGGGCAGTAGATGGTGTAGAGGCAATGGATGTGGATGTTGATTCTACAAAGACTAATTCGAACTCTGAGGATTCGAAGACCGAGTCTGAAAAGGAAAAGAGCAAACGCAAGCTCTATGTAGGATCTCAAGCCATGAGCTACCGCAGAGATCATATGGAGGTTTTGTCACCTATAAAAGATGGCATCGTTTCTGACTGGGATTTGGTGGACAATATATGGGAACATGCTTTCAAGAGTTGTCTGATGATTGATCCTACGGAGCATCCAATGCTGCTAGCTGAGCCTCCTTTAAACACTCAACAGCAGAGAGAGAAGGCGGCAGAGCTAATGTTTGAAAAGTACAAAGTTCCGGCACTGTTTATGGCTAAGAACCCTGTTCTCACGTCTTTTGCTACTGGGCGTGCTACTTCTTTGGTTGTTGACTGCGGTGGAGGATCCACAACCATTTCACCGGTGCATGATGGTTATGTTCTTCAGAAGGCTGTTGTATCGTCTCCACTTGGAGGGGAATTTCTCACTGACTGCCTACTGAAAAGCTTGGAGAGTAAAGGAATTAAAATAAGACCTAGATACTCTTTCAAGAGGAAGGAAGTACGAGCAGGGGAATTCCAGGTTGAAGATGTGGATATTCCTGACACCACGGAAAGCTACAAACTCTTCTGCCAGAGGATGATAGTGGGTGATATCAAGGATTCCATTTGTCGAGTTCCTGATACTCCCTATGACGATAAATCATATTCAAACATCCCTACTACGTCGTACGAGCTTCCTGATGGCCAGACGCTCGAGATTGGTGCTGATAGGTTCAAAGTTCCTGATGTGATGTTCAACCCGTCCATAGTCCAGACGATTCCTGGAATGGAGAAGTATGCTGAGATGATTCCTTCCGTTCGTGGGTTACCACACATGGTCATGGAGAGCATCAACAAATGTGATGTAGACATCCGGAGAGAGTTGTATAGTAGCATACTGCTTGCTGGTGGCACATCGTCAATGCAACAGCTGAAAGAACGTCTCGAAAAGGACTTGATCGAAGAGTCTCCTCACTCAGCTAGAGTTAAAGTGTTGGCAAGCGGTAACACAACAGAAAGAAGATTCAGTGTATGGATAGGAGGGAGTATATTGGCATCACTAGGCTCATTTCAACAGATGTGGTTCTCCAAGTCTGAGTATGAGGAACATGGAGCTTCCTACATTCAGAGAAAATGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006325 GO:0006996 GO:0007010 GO:0007275 GO:0007276 GO:0008150 GO:0009314 GO:0009416 GO:0009555 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051276 GO:0051704 GO:0055046 GO:0061458 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Actin

Protein Analysis

441

Amino Acids

48.94

Weight (kDa)

5.2

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	4 - 440	3.3e-168	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18450
fragaria_vesca	FvH4_3g17390 FvH4_6g50670
malus_domestica	MD03G1252000.v1.1 MD11G1273400.v1.1
prunus_persica	Prupe.4G154200_v2.0.a1
pyrus_communis	pycom03g19950
rosa_chinensis	RchiOBHm_Chr5g0028921
rosa_laevigata	RLG00000033127
rosa_multiflora	Rmu_sc0005178.1_g000021
rosa_roxburghii	Rroxscaffold_1G00050990
rosa_rugosa	Rorug05G0111500
rosa_samantha	Rh5AG203800 Rh5BG202100 Rh5CG222800 Rh5DG205400
rosa_wichuraiana	Rw5G018450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1050
AccIII	TCCGGA	1 cut(s)	1056
AciI	CCGC	5 cut(s)	9, 253, 428, 537, 1185
AclWI	GGATC	4 cut(s)	241, 356, 540, 553
AcoI	YGGCCR	1 cut(s)	886
AcsI	RAATTY	2 cut(s)	620, 716
AcuI	CTGAAG	1 cut(s)	569
AfaI	GTAC	4 cut(s)	5, 452, 705, 872
AfiI	CCNNNNNNNGG	3 cut(s)	111, 614, 1005
AgeI	ACCGGT	1 cut(s)	562
AgsI	TTSAA	8 cut(s)	343, 446, 691, 728, 852, 919, 940, 1256
AjiI	CACGTC	1 cut(s)	495
AjnI	CCWGG	2 cut(s)	720, 964
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
Alw26I	GTCTC	3 cut(s)	609, 1130, 1155
AlwI	GGATC	4 cut(s)	241, 356, 540, 553
Ama87I	CYCGRG	1 cut(s)	896
Aor13HI	TCCGGA	1 cut(s)	1056
AoxI	GGCC	2 cut(s)	90, 886
ApeKI	GCWGC	1 cut(s)	382
ApoI	RAATTY	2 cut(s)	620, 716
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AsiGI	ACCGGT	1 cut(s)	562
AsuHPI	GGTGA	4 cut(s)	86, 270, 552, 803
AsuII	TTCGAA	2 cut(s)	170, 185
AsuNHI	GCTAGC	1 cut(s)	385
AvaI	CYCGRG	1 cut(s)	896
BalI	TGGCCA	1 cut(s)	888
BamHI	GGATCC	1 cut(s)	545
BbsI	GAAGAC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	369
BccI	CCATC	4 cut(s)	116, 284, 566, 878
BceAI	ACGGC	2 cut(s)	22, 77
BcgI	CGANNNNNNTGC	2 cut(s)	887, 921
BciT130I	CCWGG	2 cut(s)	722, 966
BcoDI	GTCTC	3 cut(s)	609, 1130, 1155
BfaI	CTAG	4 cut(s)	386, 678, 1164, 1244
BisI	GCNGC	2 cut(s)	383, 429
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	2 cut(s)	384, 430
Bme1390I	CCNGG	2 cut(s)	722, 966
BmeT110I	CYCGRG	1 cut(s)	896
BmgBI	CACGTC	1 cut(s)	495
BmiI	GGNNCC	1 cut(s)	547
BmrFI	CCNGG	2 cut(s)	722, 966
BmrI	ACTGGG	2 cut(s)	316, 516
BmsI	GCATC	5 cut(s)	70, 303, 382, 1041, 1247
BmtI	GCTAGC	1 cut(s)	389
BmuI	ACTGGG	2 cut(s)	316, 516
BpiI	GAAGAC	1 cut(s)	194
Bpu1102I	GCTNAGC	1 cut(s)	390
Bpu14I	TTCGAA	2 cut(s)	170, 185
BpuEI	CTTGAG	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	87, 750
BsaWI	WCCGGW	2 cut(s)	562, 1056
BsaXI	ACNNNNNCTCC	3 cut(s)	33, 260, 290
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 614, 1005
Bse118I	RCCGGY	2 cut(s)	71, 562
Bse1I	ACTGG	2 cut(s)	311, 511
Bse3DI	GCAATG	1 cut(s)	141
BseAI	TCCGGA	1 cut(s)	1056
BseBI	CCWGG	2 cut(s)	722, 966
BseDI	CCNNGG	2 cut(s)	87, 750
BseGI	GGATG	6 cut(s)	145, 151, 373, 786, 855, 1053
BseLI	CCNNNNNNNGG	3 cut(s)	111, 614, 1005
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	5 cut(s)	168, 381, 975, 1173, 1269
BseNI	ACTGG	2 cut(s)	311, 511
BseRI	GAGGAG	1 cut(s)	1143
BseXI	GCAGC	1 cut(s)	369
BshFI	GGCC	2 cut(s)	92, 888
BshTI	ACCGGT	1 cut(s)	562
BsiHKCI	CYCGRG	1 cut(s)	896
BsiSI	CCGG	4 cut(s)	72, 461, 563, 1057
BsiWI	CGTACG	1 cut(s)	870
BslI	CCNNNNNNNGG	3 cut(s)	111, 614, 1005
BsmAI	GTCTC	3 cut(s)	609, 1130, 1155
BsmBI	CGTCTC	2 cut(s)	609, 1130
BsnI	GGCC	2 cut(s)	92, 888
BsoBI	CYCGRG	1 cut(s)	896
Bsp119I	TTCGAA	2 cut(s)	170, 185
Bsp13I	TCCGGA	1 cut(s)	1056
Bsp143I	GATC	5 cut(s)	233, 259, 361, 545, 1140
Bsp1720I	GCTNAGC	1 cut(s)	390
BspACI	CCGC	5 cut(s)	9, 253, 428, 537, 1185
BspANI	GGCC	2 cut(s)	92, 888
BspCNI	CTCAG	5 cut(s)	169, 382, 976, 1172, 1270
BspEI	TCCGGA	1 cut(s)	1056
BspLI	GGNNCC	1 cut(s)	547
BspOI	GCTAGC	1 cut(s)	389
BspPI	GGATC	4 cut(s)	241, 356, 540, 553
BspT104I	TTCGAA	2 cut(s)	170, 185
BsrDI	GCAATG	1 cut(s)	141
BsrFI	RCCGGY	2 cut(s)	71, 562
BsrI	ACTGG	2 cut(s)	311, 511
BssAI	RCCGGY	2 cut(s)	71, 562
BssECI	CCNNGG	2 cut(s)	87, 750
BssMI	GATC	5 cut(s)	233, 259, 361, 545, 1140
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	2 cut(s)	722, 966
Bst4CI	ACNGT	1 cut(s)	468
Bst6I	CTCTTC	2 cut(s)	773, 1140
BstAPI	GCANNNNNTGC	1 cut(s)	379
BstBI	TTCGAA	2 cut(s)	170, 185
BstC8I	GCNNGC	5 cut(s)	221, 387, 513, 1086, 1183
BstDEI	CTNAG	6 cut(s)	177, 390, 477, 984, 1159, 1278
BstDSI	CCRYGG	1 cut(s)	750
BstEII	GGTNACC	1 cut(s)	1008
BstF5I	GGATG	6 cut(s)	145, 151, 373, 786, 855, 1053
BstKTI	GATC	5 cut(s)	236, 262, 364, 548, 1143
BstMAI	GTCTC	3 cut(s)	609, 1130, 1155
BstMBI	GATC	5 cut(s)	233, 259, 361, 545, 1140
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 89, 379, 391
BstNI	CCWGG	2 cut(s)	722, 966
BstNSI	RCATGY	1 cut(s)	338
BstPI	GGTNACC	1 cut(s)	1008
BstSCI	CCNGG	2 cut(s)	720, 964
BstV1I	GCAGC	1 cut(s)	369
BstV2I	GAAGAC	1 cut(s)	194
BstX2I	RGATCY	2 cut(s)	233, 545
BstYI	RGATCY	2 cut(s)	233, 545
BsuRI	GGCC	2 cut(s)	92, 888
BtgI	CCRYGG	1 cut(s)	750
BtrI	CACGTC	1 cut(s)	495
BtsCI	GGATG	6 cut(s)	145, 151, 373, 786, 855, 1053
BtsIMutI	CAGTG	3 cut(s)	464, 627, 1216
Cac8I	GCNNGC	5 cut(s)	221, 387, 513, 1086, 1183
Cfr10I	RCCGGY	2 cut(s)	71, 562
CseI	GACGC	1 cut(s)	901
Csp6I	GTAC	4 cut(s)	4, 451, 704, 871
CspAI	ACCGGT	1 cut(s)	562
CspCI	CAANNNNNGTGG	4 cut(s)	123, 158, 1244, 1279
CviAII	CATG	6 cut(s)	244, 335, 569, 1018, 1024, 1292
CviQI	GTAC	4 cut(s)	4, 451, 704, 871
DdeI	CTNAG	6 cut(s)	177, 390, 477, 984, 1159, 1278
DpnI	GATC	5 cut(s)	235, 261, 363, 547, 1142
DpnII	GATC	5 cut(s)	233, 259, 361, 545, 1140
DraI	TTTAAA	1 cut(s)	402
EaeI	YGGCCR	1 cut(s)	886
Eam1104I	CTCTTC	2 cut(s)	773, 1140
EarI	CTCTTC	2 cut(s)	773, 1140
EciI	GGCGGA	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	87
Eco32I	GATATC	1 cut(s)	796
Eco57I	CTGAAG	1 cut(s)	569
Eco88I	CYCGRG	1 cut(s)	896
Eco91I	GGTNACC	1 cut(s)	1008
EcoO65I	GGTNACC	1 cut(s)	1008
EcoRI	GAATTC	1 cut(s)	716
EcoRII	CCWGG	2 cut(s)	720, 964
EcoRV	GATATC	1 cut(s)	796
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
Esp3I	CGTCTC	2 cut(s)	609, 1130
FaeI	CATG	6 cut(s)	247, 338, 572, 1021, 1027, 1295
FatI	CATG	6 cut(s)	243, 334, 568, 1017, 1023, 1291
FauNDI	CATATG	1 cut(s)	264
FblI	GTMKAC	1 cut(s)	1050
Fnu4HI	GCNGC	2 cut(s)	383, 429
FokI	GGATG	6 cut(s)	152, 158, 360, 793, 842, 1040
Fsp4HI	GCNGC	2 cut(s)	383, 429
FspBI	CTAG	4 cut(s)	386, 678, 1164, 1244
GluI	GCNGC	2 cut(s)	383, 429
HaeIII	GGCC	2 cut(s)	92, 888
HapII	CCGG	4 cut(s)	72, 461, 563, 1057
HgaI	GACGC	1 cut(s)	901
Hin1II	CATG	6 cut(s)	247, 338, 572, 1021, 1027, 1295
HincII	GTYRAC	2 cut(s)	37, 532
HindII	GTYRAC	2 cut(s)	37, 532
HindIII	AAGCTT	1 cut(s)	646
HinfI	GANTC	8 cut(s)	152, 182, 194, 803, 961, 991, 1148, 1206
HpaII	CCGG	4 cut(s)	72, 461, 563, 1057
HphI	GGTGA	4 cut(s)	86, 270, 552, 803
Hpy166II	GTNNAC	4 cut(s)	37, 319, 532, 1051
Hpy188I	TCNGA	7 cut(s)	178, 199, 304, 354, 588, 1279, 1311
Hpy8I	GTNNAC	4 cut(s)	37, 319, 532, 1051
Hpy99I	CGWCG	1 cut(s)	871
HpyAV	CCTTC	5 cut(s)	111, 418, 583, 691, 1005
HpyCH4III	ACNGT	1 cut(s)	468
HpyCH4IV	ACGT	3 cut(s)	494, 866, 1123
HpyCH4V	TGCA	3 cut(s)	57, 568, 1108
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 89, 379, 391
HpyF3I	CTNAG	6 cut(s)	177, 390, 477, 984, 1159, 1278
HpySE526I	ACGT	3 cut(s)	494, 866, 1123
Hsp92II	CATG	6 cut(s)	247, 338, 572, 1021, 1027, 1295
Kpn2I	TCCGGA	1 cut(s)	1056
Kzo9I	GATC	5 cut(s)	233, 259, 361, 545, 1140
LmnI	GCTCC	3 cut(s)	88, 370, 1295
Lsp1109I	GCAGC	1 cut(s)	369
LweI	GCATC	5 cut(s)	70, 303, 382, 1041, 1247
MaeI	CTAG	4 cut(s)	386, 678, 1164, 1244
MaeII	ACGT	3 cut(s)	494, 866, 1123
MaeIII	GTNAC	4 cut(s)	65, 276, 1008, 1187
MalI	GATC	5 cut(s)	235, 261, 363, 547, 1142
MboI	GATC	5 cut(s)	233, 259, 361, 545, 1140
MboII	GAAGA	7 cut(s)	89, 199, 575, 740, 760, 1157, 1215
MflI	RGATCY	2 cut(s)	233, 545
MlsI	TGGCCA	1 cut(s)	888
MluCI	AATT	4 cut(s)	166, 620, 663, 716
MluNI	TGGCCA	1 cut(s)	888
MlyI	GAGTC	2 cut(s)	203, 1157
Mox20I	TGGCCA	1 cut(s)	888
MroI	TCCGGA	1 cut(s)	1056
MscI	TGGCCA	1 cut(s)	888
MseI	TTAA	4 cut(s)	401, 666, 1170, 1324
MslI	CAYNNNNRTG	1 cut(s)	1022
Msp20I	TGGCCA	1 cut(s)	888
MspA1I	CMGCKG	1 cut(s)	1114
MspI	CCGG	4 cut(s)	72, 461, 563, 1057
MspR9I	CCNGG	2 cut(s)	722, 966
MvaI	CCWGG	2 cut(s)	722, 966
MwoI	GCNNNNNNNGC	4 cut(s)	68, 89, 379, 391
NdeI	CATATG	1 cut(s)	264
NdeII	GATC	5 cut(s)	233, 259, 361, 545, 1140
NheI	GCTAGC	1 cut(s)	385
NlaIII	CATG	6 cut(s)	247, 338, 572, 1021, 1027, 1295
NlaIV	GGNNCC	1 cut(s)	547
NmuCI	GTSAC	1 cut(s)	276
NspI	RCATGY	1 cut(s)	338
NspV	TTCGAA	2 cut(s)	170, 185
PaeR7I	CTCGAG	1 cut(s)	896
PfeI	GAWTC	6 cut(s)	152, 182, 803, 961, 991, 1206
Pfl23II	CGTACG	1 cut(s)	870
PflFI	GACNNNGTC	1 cut(s)	193
PfoI	TCCNGGA	1 cut(s)	964
PinAI	ACCGGT	1 cut(s)	562
PkrI	GCNGC	2 cut(s)	384, 430
PleI	GAGTC	2 cut(s)	202, 1156
PpsI	GAGTC	2 cut(s)	202, 1156
Psp6I	CCWGG	2 cut(s)	720, 964
PspEI	GGTNACC	1 cut(s)	1008
PspGI	CCWGG	2 cut(s)	720, 964
PspLI	CGTACG	1 cut(s)	870
PspN4I	GGNNCC	1 cut(s)	547
PsuI	RGATCY	2 cut(s)	233, 545
PsyI	GACNNNGTC	1 cut(s)	193
PvuII	CAGCTG	1 cut(s)	1114
RsaI	GTAC	4 cut(s)	5, 452, 705, 872
RsaNI	GTAC	4 cut(s)	4, 451, 704, 871
RseI	CAYNNNNRTG	1 cut(s)	1022
SaqAI	TTAA	4 cut(s)	401, 666, 1170, 1324
SatI	GCNGC	2 cut(s)	383, 429
Sau3AI	GATC	5 cut(s)	233, 259, 361, 545, 1140
SchI	GAGTC	2 cut(s)	203, 1157
ScrFI	CCNGG	2 cut(s)	722, 966
SfaNI	GCATC	5 cut(s)	70, 303, 382, 1041, 1247
Sfr274I	CTCGAG	1 cut(s)	896
SfuI	TTCGAA	2 cut(s)	170, 185
SgrAI	CRCCGGYG	2 cut(s)	71, 562
SlaI	CTCGAG	1 cut(s)	896
SmiMI	CAYNNNNRTG	1 cut(s)	1022
SmlI	CTYRAG	2 cut(s)	237, 896
SmoI	CTYRAG	2 cut(s)	237, 896
Sse9I	AATT	4 cut(s)	166, 620, 663, 716
SsiI	CCGC	5 cut(s)	9, 253, 428, 537, 1185
SspMI	CTAG	4 cut(s)	386, 678, 1164, 1244
StyD4I	CCNGG	2 cut(s)	720, 964
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	468
TaiI	ACGT	3 cut(s)	497, 869, 1126
TaqI	TCGA	6 cut(s)	170, 185, 814, 897, 1128, 1143
TaqII	GACCGA	1 cut(s)	206
TasI	AATT	4 cut(s)	166, 620, 663, 716
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	6 cut(s)	152, 182, 803, 961, 991, 1206
Tru1I	TTAA	4 cut(s)	401, 666, 1170, 1324
Tru9I	TTAA	4 cut(s)	401, 666, 1170, 1324
TscAI	CASTG	3 cut(s)	471, 634, 1216
TseFI	GTSAC	1 cut(s)	276
TseI	GCWGC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	276
TspDTI	ATGAA	1 cut(s)	30
TspGWI	ACGGA	4 cut(s)	94, 383, 767, 988
TspRI	CASTG	3 cut(s)	471, 634, 1216
Tth111I	GACNNNGTC	1 cut(s)	193
XapI	RAATTY	2 cut(s)	620, 716
XceI	RCATGY	1 cut(s)	338
XcmI	CCANNNNNNNNNTGG	1 cut(s)	962
XhoI	CTCGAG	1 cut(s)	896
XmiI	GTMKAC	1 cut(s)	1050
XspI	CTAG	4 cut(s)	386, 678, 1164, 1244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.