F-box and associated interaction domains-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| polyprenyl_synt | PF00348 | 113 - 375 | 1.1e-66 | Polyprenyl synthetase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 475 |
| AciI | CCGC | 3 cut(s) | 310, 505, 1190 |
| AclI | AACGTT | 1 cut(s) | 787 |
| AclWI | GGATC | 1 cut(s) | 383 |
| AcsI | RAATTY | 2 cut(s) | 219, 616 |
| AfaI | GTAC | 2 cut(s) | 359, 1236 |
| AfeI | AGCGCT | 1 cut(s) | 1254 |
| AgsI | TTSAA | 5 cut(s) | 46, 846, 941, 1082, 1205 |
| AjiI | CACGTC | 1 cut(s) | 599 |
| AjnI | CCWGG | 1 cut(s) | 193 |
| AleI | CACNNNNGTG | 1 cut(s) | 707 |
| AluBI | AGCT | 8 cut(s) | 42, 113, 237, 286, 340, 641, 674, 1165 |
| AluI | AGCT | 8 cut(s) | 42, 113, 237, 286, 340, 641, 674, 1165 |
| Alw26I | GTCTC | 4 cut(s) | 109, 129, 440, 589 |
| AlwI | GGATC | 1 cut(s) | 383 |
| Ama87I | CYCGRG | 2 cut(s) | 12, 669 |
| Aor51HI | AGCGCT | 1 cut(s) | 1254 |
| AoxI | GGCC | 1 cut(s) | 342 |
| ApeKI | GCWGC | 2 cut(s) | 350, 776 |
| ApoI | RAATTY | 2 cut(s) | 219, 616 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1209 |
| AspLEI | GCGC | 1 cut(s) | 1255 |
| AsuHPI | GGTGA | 3 cut(s) | 215, 764, 1258 |
| AsuNHI | GCTAGC | 1 cut(s) | 1165 |
| AvaI | CYCGRG | 2 cut(s) | 12, 669 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 806, 838 |
| BauI | CACGAG | 1 cut(s) | 592 |
| BbsI | GAAGAC | 1 cut(s) | 821 |
| BbvI | GCAGC | 2 cut(s) | 337, 788 |
| BccI | CCATC | 2 cut(s) | 310, 1042 |
| BciT130I | CCWGG | 1 cut(s) | 195 |
| BcoDI | GTCTC | 4 cut(s) | 109, 129, 440, 589 |
| BfaI | CTAG | 5 cut(s) | 24, 128, 210, 1166, 1259 |
| BfmI | CTRYAG | 1 cut(s) | 774 |
| BfoI | RGCGCY | 1 cut(s) | 1256 |
| BglII | AGATCT | 1 cut(s) | 1261 |
| BisI | GCNGC | 3 cut(s) | 351, 777, 1191 |
| BlsI | GCNGC | 3 cut(s) | 352, 778, 1192 |
| BmcAI | AGTACT | 1 cut(s) | 359 |
| Bme1390I | CCNGG | 1 cut(s) | 195 |
| BmeT110I | CYCGRG | 2 cut(s) | 12, 669 |
| BmgBI | CACGTC | 1 cut(s) | 599 |
| BmiI | GGNNCC | 2 cut(s) | 252, 333 |
| BmrFI | CCNGG | 1 cut(s) | 195 |
| BmsI | GCATC | 6 cut(s) | 223, 475, 574, 748, 842, 989 |
| BmtI | GCTAGC | 1 cut(s) | 1169 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1011 |
| BpiI | GAAGAC | 1 cut(s) | 821 |
| Bpu10I | CCTNAGC | 2 cut(s) | 327, 336 |
| BsaJI | CCNNGG | 2 cut(s) | 193, 1129 |
| Bse3DI | GCAATG | 1 cut(s) | 1147 |
| BseBI | CCWGG | 1 cut(s) | 195 |
| BseDI | CCNNGG | 2 cut(s) | 193, 1129 |
| BseGI | GGATG | 2 cut(s) | 586, 1008 |
| BseMI | GCAATG | 1 cut(s) | 1147 |
| BseMII | CTCAG | 4 cut(s) | 134, 345, 435, 1076 |
| BseXI | GCAGC | 2 cut(s) | 337, 788 |
| BseYI | CCCAGC | 1 cut(s) | 875 |
| BsgI | GTGCAG | 2 cut(s) | 408, 1092 |
| Bsh1236I | CGCG | 1 cut(s) | 475 |
| BshFI | GGCC | 1 cut(s) | 344 |
| BsiHKCI | CYCGRG | 2 cut(s) | 12, 669 |
| BsmAI | GTCTC | 4 cut(s) | 109, 129, 440, 589 |
| BsmBI | CGTCTC | 2 cut(s) | 109, 589 |
| BsnI | GGCC | 1 cut(s) | 344 |
| BsoBI | CYCGRG | 2 cut(s) | 12, 669 |
| Bsp143I | GATC | 4 cut(s) | 375, 781, 1241, 1261 |
| BspACI | CCGC | 3 cut(s) | 310, 505, 1190 |
| BspANI | GGCC | 1 cut(s) | 344 |
| BspCNI | CTCAG | 4 cut(s) | 133, 346, 436, 1075 |
| BspFNI | CGCG | 1 cut(s) | 475 |
| BspLI | GGNNCC | 2 cut(s) | 252, 333 |
| BspMAI | CTGCAG | 1 cut(s) | 778 |
| BspOI | GCTAGC | 1 cut(s) | 1169 |
| BspPI | GGATC | 1 cut(s) | 383 |
| BsrDI | GCAATG | 1 cut(s) | 1147 |
| BssECI | CCNNGG | 2 cut(s) | 193, 1129 |
| BssMI | GATC | 4 cut(s) | 375, 781, 1241, 1261 |
| BssSI | CACGAG | 1 cut(s) | 592 |
| BssT1I | CCWWGG | 1 cut(s) | 1129 |
| Bst2BI | CACGAG | 1 cut(s) | 592 |
| Bst2UI | CCWGG | 1 cut(s) | 195 |
| Bst4CI | ACNGT | 3 cut(s) | 403, 730, 851 |
| Bst6I | CTCTTC | 2 cut(s) | 1047, 1215 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1187 |
| BstC8I | GCNNGC | 7 cut(s) | 312, 342, 507, 556, 1071, 1167, 1183 |
| BstDEI | CTNAG | 8 cut(s) | 120, 327, 336, 354, 444, 695, 1062, 1238 |
| BstF5I | GGATG | 2 cut(s) | 586, 1008 |
| BstFNI | CGCG | 1 cut(s) | 475 |
| BstH2I | RGCGCY | 1 cut(s) | 1256 |
| BstHHI | GCGC | 1 cut(s) | 1255 |
| BstKTI | GATC | 4 cut(s) | 378, 784, 1244, 1264 |
| BstMAI | GTCTC | 4 cut(s) | 109, 129, 440, 589 |
| BstMBI | GATC | 4 cut(s) | 375, 781, 1241, 1261 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 350, 647, 680, 872, 902, 1187, 1196 |
| BstNI | CCWGG | 1 cut(s) | 195 |
| BstNSI | RCATGY | 1 cut(s) | 1181 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1011 |
| BstSCI | CCNGG | 1 cut(s) | 193 |
| BstSFI | CTRYAG | 1 cut(s) | 774 |
| BstUI | CGCG | 1 cut(s) | 475 |
| BstV1I | GCAGC | 2 cut(s) | 337, 788 |
| BstV2I | GAAGAC | 1 cut(s) | 821 |
| BstX2I | RGATCY | 1 cut(s) | 1261 |
| BstYI | RGATCY | 1 cut(s) | 1261 |
| BsuRI | GGCC | 1 cut(s) | 344 |
| BtgZI | GCGATG | 3 cut(s) | 329, 911, 1061 |
| BtrI | CACGTC | 1 cut(s) | 599 |
| BtsCI | GGATG | 2 cut(s) | 586, 1008 |
| BtsIMutI | CAGTG | 1 cut(s) | 425 |
| Cac8I | GCNNGC | 7 cut(s) | 312, 342, 507, 556, 1071, 1167, 1183 |
| CfoI | GCGC | 1 cut(s) | 1255 |
| Csp6I | GTAC | 2 cut(s) | 358, 1235 |
| CviAII | CATG | 6 cut(s) | 461, 548, 566, 796, 1016, 1178 |
| CviQI | GTAC | 2 cut(s) | 358, 1235 |
| DdeI | CTNAG | 8 cut(s) | 120, 327, 336, 354, 444, 695, 1062, 1238 |
| DpnI | GATC | 4 cut(s) | 377, 783, 1243, 1263 |
| DpnII | GATC | 4 cut(s) | 375, 781, 1241, 1261 |
| DraI | TTTAAA | 1 cut(s) | 367 |
| Eam1104I | CTCTTC | 2 cut(s) | 1047, 1215 |
| EarI | CTCTTC | 2 cut(s) | 1047, 1215 |
| Eco130I | CCWWGG | 1 cut(s) | 1129 |
| Eco47III | AGCGCT | 1 cut(s) | 1254 |
| Eco88I | CYCGRG | 2 cut(s) | 12, 669 |
| EcoRII | CCWGG | 1 cut(s) | 193 |
| EcoT14I | CCWWGG | 1 cut(s) | 1129 |
| ErhI | CCWWGG | 1 cut(s) | 1129 |
| Esp3I | CGTCTC | 2 cut(s) | 109, 589 |
| FaeI | CATG | 6 cut(s) | 464, 551, 569, 799, 1019, 1181 |
| FatI | CATG | 6 cut(s) | 460, 547, 565, 795, 1015, 1177 |
| FauI | CCCGC | 2 cut(s) | 303, 498 |
| Fnu4HI | GCNGC | 3 cut(s) | 351, 777, 1191 |
| FokI | GGATG | 2 cut(s) | 593, 995 |
| Fsp4HI | GCNGC | 3 cut(s) | 351, 777, 1191 |
| FspBI | CTAG | 5 cut(s) | 24, 128, 210, 1166, 1259 |
| GlaI | GCGC | 1 cut(s) | 1254 |
| GluI | GCNGC | 3 cut(s) | 351, 777, 1191 |
| GsaI | CCCAGC | 1 cut(s) | 879 |
| HaeII | RGCGCY | 1 cut(s) | 1256 |
| HaeIII | GGCC | 1 cut(s) | 344 |
| HhaI | GCGC | 1 cut(s) | 1255 |
| Hin1II | CATG | 6 cut(s) | 464, 551, 569, 799, 1019, 1181 |
| Hin6I | GCGC | 1 cut(s) | 1253 |
| HinP1I | GCGC | 1 cut(s) | 1253 |
| HincII | GTYRAC | 1 cut(s) | 420 |
| HindII | GTYRAC | 1 cut(s) | 420 |
| HindIII | AAGCTT | 1 cut(s) | 111 |
| HinfI | GANTC | 5 cut(s) | 134, 448, 544, 608, 1205 |
| HphI | GGTGA | 3 cut(s) | 215, 764, 1258 |
| Hpy166II | GTNNAC | 1 cut(s) | 420 |
| Hpy188I | TCNGA | 2 cut(s) | 280, 1006 |
| Hpy188III | TCNNGA | 3 cut(s) | 669, 1121, 1214 |
| Hpy8I | GTNNAC | 1 cut(s) | 420 |
| Hpy99I | CGWCG | 2 cut(s) | 1226, 1229 |
| HpyAV | CCTTC | 2 cut(s) | 374, 985 |
| HpyCH4III | ACNGT | 3 cut(s) | 403, 730, 851 |
| HpyCH4IV | ACGT | 3 cut(s) | 598, 787, 818 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 350, 647, 680, 872, 902, 1187, 1196 |
| HpyF3I | CTNAG | 8 cut(s) | 120, 327, 336, 354, 444, 695, 1062, 1238 |
| HpySE526I | ACGT | 3 cut(s) | 598, 787, 818 |
| Hsp92II | CATG | 6 cut(s) | 464, 551, 569, 799, 1019, 1181 |
| HspAI | GCGC | 1 cut(s) | 1253 |
| Kzo9I | GATC | 4 cut(s) | 375, 781, 1241, 1261 |
| LmnI | GCTCC | 4 cut(s) | 242, 1036, 1162, 1260 |
| Lsp1109I | GCAGC | 2 cut(s) | 337, 788 |
| LweI | GCATC | 6 cut(s) | 223, 475, 574, 748, 842, 989 |
| MaeI | CTAG | 5 cut(s) | 24, 128, 210, 1166, 1259 |
| MaeII | ACGT | 3 cut(s) | 598, 787, 818 |
| MaeIII | GTNAC | 3 cut(s) | 532, 717, 745 |
| MalI | GATC | 4 cut(s) | 377, 783, 1243, 1263 |
| MboI | GATC | 4 cut(s) | 375, 781, 1241, 1261 |
| MboII | GAAGA | 7 cut(s) | 91, 157, 494, 826, 1064, 1202, 1241 |
| MfeI | CAATTG | 2 cut(s) | 941, 1200 |
| MflI | RGATCY | 1 cut(s) | 1261 |
| MluCI | AATT | 8 cut(s) | 95, 219, 231, 500, 616, 941, 1023, 1200 |
| MlyI | GAGTC | 1 cut(s) | 442 |
| MnlI | CCTC | 8 cut(s) | 241, 355, 381, 569, 700, 700, 1071, 1146 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1209 |
| MseI | TTAA | 3 cut(s) | 203, 366, 614 |
| MslI | CAYNNNNRTG | 2 cut(s) | 570, 707 |
| MspR9I | CCNGG | 1 cut(s) | 195 |
| MunI | CAATTG | 2 cut(s) | 941, 1200 |
| MvaI | CCWGG | 1 cut(s) | 195 |
| MvnI | CGCG | 1 cut(s) | 475 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 350, 647, 680, 872, 902, 1187, 1196 |
| NdeII | GATC | 4 cut(s) | 375, 781, 1241, 1261 |
| NheI | GCTAGC | 1 cut(s) | 1165 |
| NlaIII | CATG | 6 cut(s) | 464, 551, 569, 799, 1019, 1181 |
| NlaIV | GGNNCC | 2 cut(s) | 252, 333 |
| NmuCI | GTSAC | 1 cut(s) | 532 |
| NspI | RCATGY | 1 cut(s) | 1181 |
| OliI | CACNNNNGTG | 1 cut(s) | 707 |
| PaeR7I | CTCGAG | 1 cut(s) | 669 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1209 |
| PfeI | GAWTC | 4 cut(s) | 134, 544, 608, 1205 |
| PkrI | GCNGC | 3 cut(s) | 352, 778, 1192 |
| PleI | GAGTC | 1 cut(s) | 442 |
| PpsI | GAGTC | 1 cut(s) | 442 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1011 |
| Psp1406I | AACGTT | 1 cut(s) | 787 |
| Psp6I | CCWGG | 1 cut(s) | 193 |
| PspFI | CCCAGC | 1 cut(s) | 875 |
| PspGI | CCWGG | 1 cut(s) | 193 |
| PspN4I | GGNNCC | 2 cut(s) | 252, 333 |
| PstI | CTGCAG | 1 cut(s) | 778 |
| PsuI | RGATCY | 1 cut(s) | 1261 |
| RsaI | GTAC | 2 cut(s) | 359, 1236 |
| RsaNI | GTAC | 2 cut(s) | 358, 1235 |
| RseI | CAYNNNNRTG | 2 cut(s) | 570, 707 |
| SaqAI | TTAA | 3 cut(s) | 203, 366, 614 |
| SatI | GCNGC | 3 cut(s) | 351, 777, 1191 |
| Sau3AI | GATC | 4 cut(s) | 375, 781, 1241, 1261 |
| ScaI | AGTACT | 1 cut(s) | 359 |
| SchI | GAGTC | 1 cut(s) | 442 |
| ScrFI | CCNGG | 1 cut(s) | 195 |
| SfaNI | GCATC | 6 cut(s) | 223, 475, 574, 748, 842, 989 |
| SfcI | CTRYAG | 1 cut(s) | 774 |
| Sfr274I | CTCGAG | 1 cut(s) | 669 |
| SlaI | CTCGAG | 1 cut(s) | 669 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 570, 707 |
| SmlI | CTYRAG | 1 cut(s) | 669 |
| SmoI | CTYRAG | 1 cut(s) | 669 |
| Sse9I | AATT | 8 cut(s) | 95, 219, 231, 500, 616, 941, 1023, 1200 |
| SsiI | CCGC | 3 cut(s) | 310, 505, 1190 |
| SspI | AATATT | 2 cut(s) | 803, 1038 |
| SspMI | CTAG | 5 cut(s) | 24, 128, 210, 1166, 1259 |
| StyD4I | CCNGG | 1 cut(s) | 193 |
| StyI | CCWWGG | 1 cut(s) | 1129 |
| TaaI | ACNGT | 3 cut(s) | 403, 730, 851 |
| TaiI | ACGT | 3 cut(s) | 601, 790, 821 |
| TaqI | TCGA | 3 cut(s) | 137, 378, 670 |
| TasI | AATT | 8 cut(s) | 95, 219, 231, 500, 616, 941, 1023, 1200 |
| TatI | WGTACW | 2 cut(s) | 357, 1234 |
| TauI | GCSGC | 1 cut(s) | 1193 |
| TfiI | GAWTC | 4 cut(s) | 134, 544, 608, 1205 |
| Tru1I | TTAA | 3 cut(s) | 203, 366, 614 |
| Tru9I | TTAA | 3 cut(s) | 203, 366, 614 |
| TscAI | CASTG | 1 cut(s) | 432 |
| TseFI | GTSAC | 1 cut(s) | 532 |
| TseI | GCWGC | 2 cut(s) | 350, 776 |
| Tsp45I | GTSAC | 1 cut(s) | 532 |
| TspDTI | ATGAA | 3 cut(s) | 477, 536, 600 |
| TspGWI | ACGGA | 2 cut(s) | 610, 1001 |
| TspRI | CASTG | 1 cut(s) | 432 |
| XapI | RAATTY | 2 cut(s) | 219, 616 |
| XceI | RCATGY | 1 cut(s) | 1181 |
| XhoI | CTCGAG | 1 cut(s) | 669 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1209 |
| XspI | CTAG | 5 cut(s) | 24, 128, 210, 1166, 1259 |
| ZrmI | AGTACT | 1 cut(s) | 359 |