MD11G1031100.v1.1

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000068
Physical Location & Seq
Forward (+)
2710079 .. 2717949
7871 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1031100.v1.1.491

Sequence Viewer

Length: 1563 bp
ATGAACGAATCAATTCGCGTGGTTGGCATCTGTAATGGGCTGGTGTTCCTTGCAGTTGCAGATGATACACTCACTTTGGCTAACACCTTCATAATATTCAACCCATCTATGAGAAAGTCGGTGACCCTTCCTAAGCCGACAATTGGTCGGTACCGTACTTGTATTGGTTTTGGGTTTGACGCTGTGACTAATGACTACAAAGTTGTGAGATTTGTCACTGATCGTCCGAATACTTTTCATGAGGATTATTCACTTGCTGGAGGCTCATGGAGTAATCCTCGTTCTTTGGATCATGTGTGCGAAGTTATGGATCCTCTCAAATCCCAAGCTTTTGTAAATGGGGCGATTCACTGGGGGGCATGGCGCCGCTTAACAAACAGTTATGAATATATCATTTTGGCATTTGACGTGGGCAGCAATTCATTTCACAGGATCATGGTGCCAATGAGTTTCAGTAACTCATGGACCGCGCAATTGTCTGTTTCAGGTGACGGGAAATCCATTGCTCTGTTCCAGCCTTATTTCATCTGTATTGGAGAGCCTCGTCTTATTTACTGCAAGCTACAATTTCCAATTGTTCCCAAGCGCAATAGATTCCTTCGCGTGGTCGGCATTTGTAATGGGTTGGTCTTCCTTGCAGATGACAGACTCCATTTAGGTTACACCTTCATAATATTCAACCCGTCGATAAGAAAGTCAGTGACCCTTCCAGAGCCTCACCTTGCCTTCGACACAATTGGCCCGTATTCCGCTCTTGTTGGGTTTGGTTTTGATGCTGTGATCAATGACTACAAGGTTGTGAGACTCCTGACCGATCAATGCGAGGATCCAAATACTTTTTATGAGGTTTATTCACTTGCTAGAGGCTTGTGGAGTAGTCCTCGTTCTTTTGACCCCGTTTGTAAAGTTTTTGATTCTCTCAAATTTCAGACTTTTGTGAACGGGGCTGTTCATTGGCAGGCACGGCGCTGCTTGGACGATGGCCGTTATCAAAATTTCATTTTAGCATTTGATGTGGACAGTGAGTTATTTCACGAGATAAAGGTGCCAAAGAGTTTTAGACAGGATAAACCATTAGATTATCACCTGTCTGTTTCAGGTGATGGAAACTCCATTGCTGTGTTCACGATGCCGCGGGGTCGTAATTGTACTGAGGATTTTCTTGACATATGGGTGATGACAGAGTATGGCATCGAGGATTCATGGGCCAAACTGATAACTCTAAGTCCACCGGATCCAGAAAGCAGGGTGCCCTACAAGCCCTTATGTTTTAGGAAGAGGGGTGAAGTAGTGTTGGTATCGACTGATGACTATGGCAATATGCATGAATTAGTTTCTTTAGACCTTGTGAGCAAACAATTTAAAAATCTTGGGATTCGCGGATATGGATATTACTATGCTGAACCTTATGAGGAGAGCCTCGCCTTACTTGACAATGTCGATGCAGTTTCTTACAGAGGAGCAGATCAGGTAGAAAAAGATGAGGCAGATAGATTTCAAGTCCTTGACGATGCCGTTGTAATGAATGTGCTCAATCTGCTGCTCAGTCATCGTTTATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

521

Amino Acids

59.06

Weight (kDa)

5.72

Isoelectric Point (pI)

26.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 5 - 173 2.1e-12 F-box associated beta propeller domain
FBA_3 PF08268 11 - 155 3.6e-16 F-box associated beta propeller domain
FBA_3 PF08268 195 - 465 4.1e-18 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 200 - 352 2.1e-08 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 203 - 432 5.5e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 150
AccB1I GGYRCC 5 cut(s) 150, 363, 439, 1045, 1249
AccBSI CCGCTC 1 cut(s) 752
AccII CGCG 5 cut(s) 18, 470, 603, 1135, 1380
AciI CCGC 6 cut(s) 367, 468, 750, 1133, 1135, 1380
AclWI GGATC 8 cut(s) 297, 305, 318, 440, 821, 834, 1229, 1242
AcoI YGGCCR 1 cut(s) 982
AcsI RAATTY 2 cut(s) 923, 994
AcyI GRCGYC 1 cut(s) 364
AfaI GTAC 3 cut(s) 152, 157, 1150
AfiI CCNNNNNNNGG 2 cut(s) 143, 604
AgsI TTSAA 3 cut(s) 100, 679, 1499
AhdI GACNNNNNGTC 1 cut(s) 144
AjiI CACGTC 1 cut(s) 409
AluBI AGCT 2 cut(s) 329, 562
AluI AGCT 2 cut(s) 329, 562
Alw21I GWGCWC 1 cut(s) 1533
Alw26I GTCTC 1 cut(s) 796
AlwI GGATC 8 cut(s) 297, 305, 318, 440, 821, 834, 1229, 1242
AoxI GGCC 3 cut(s) 739, 982, 1206
ApeKI GCWGC 3 cut(s) 414, 969, 1540
ApoI RAATTY 2 cut(s) 923, 994
Asp700I GAANNNNTTC 1 cut(s) 12
Asp718I GGTACC 1 cut(s) 150
AspLEI GCGC 4 cut(s) 366, 472, 588, 969
AspS9I GGNCC 3 cut(s) 465, 740, 1206
AsuHPI GGTGA 7 cut(s) 133, 500, 710, 1076, 1112, 1186, 1295
AvaII GGWCC 1 cut(s) 465
BaeGI GKGCMC 1 cut(s) 1254
BamHI GGATCC 3 cut(s) 310, 826, 1234
BanI GGYRCC 5 cut(s) 150, 363, 439, 1045, 1249
BauI CACGAG 1 cut(s) 1034
BbsI GAAGAC 1 cut(s) 622
Bbv12I GWGCWC 1 cut(s) 1533
BbvI GCAGC 3 cut(s) 426, 956, 1527
BccI CCATC 3 cut(s) 112, 974, 1097
BceAI ACGGC 3 cut(s) 969, 980, 1499
BclI TGATCA 1 cut(s) 780
BcoDI GTCTC 1 cut(s) 796
BfaI CTAG 1 cut(s) 861
BfoI RGCGCY 2 cut(s) 367, 970
BisI GCNGC 5 cut(s) 367, 415, 970, 1133, 1541
BlsI GCNGC 5 cut(s) 368, 416, 971, 1134, 1542
Bme18I GGWCC 1 cut(s) 465
BmeRI GACNNNNNGTC 1 cut(s) 144
BmgBI CACGTC 1 cut(s) 409
BmgT120I GGNCC 3 cut(s) 465, 740, 1206
BmiI GGNNCC 8 cut(s) 152, 312, 365, 441, 828, 1047, 1236, 1251
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 6 cut(s) 36, 763, 1119, 1200, 1432, 1501
BmuI ACTGGG 1 cut(s) 361
BpiI GAAGAC 1 cut(s) 622
BplI GAGNNNNNCTC 4 cut(s) 262, 294, 865, 897
BpmI CTGGAG 1 cut(s) 279
Bpu10I CCTNAGC 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 364
BsaJI CCNNGG 1 cut(s) 1133
BsaWI WCCGGW 1 cut(s) 1231
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 604
Bse1I ACTGG 1 cut(s) 356
Bse3DI GCAATG 2 cut(s) 501, 1113
BseDI CCNNGG 1 cut(s) 1133
BseLI CCNNNNNNNGG 2 cut(s) 143, 604
BseMI GCAATG 2 cut(s) 501, 1113
BseMII CTCAG 2 cut(s) 1143, 1558
BseNI ACTGG 1 cut(s) 356
BseRI GAGGAG 2 cut(s) 1427, 1473
BseSI GKGCMC 1 cut(s) 1254
BseXI GCAGC 3 cut(s) 426, 956, 1527
Bsh1236I CGCG 5 cut(s) 18, 470, 603, 1135, 1380
BshFI GGCC 3 cut(s) 741, 984, 1208
BshNI GGYRCC 5 cut(s) 150, 363, 439, 1045, 1249
BsiHKAI GWGCWC 1 cut(s) 1533
BsiSI CCGG 1 cut(s) 1232
BslI CCNNNNNNNGG 2 cut(s) 143, 604
BsmAI GTCTC 1 cut(s) 796
BsnI GGCC 3 cut(s) 741, 984, 1208
Bsp1286I GDGCHC 2 cut(s) 1254, 1533
Bsp143I GATC 9 cut(s) 220, 289, 310, 432, 780, 814, 826, 1234, 1465
BspACI CCGC 6 cut(s) 367, 468, 750, 1133, 1135, 1380
BspANI GGCC 3 cut(s) 741, 984, 1208
BspCNI CTCAG 2 cut(s) 1144, 1557
BspFNI CGCG 5 cut(s) 18, 470, 603, 1135, 1380
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 8 cut(s) 152, 312, 365, 441, 828, 1047, 1236, 1251
BspPI GGATC 8 cut(s) 297, 305, 318, 440, 821, 834, 1229, 1242
BspT107I GGYRCC 5 cut(s) 150, 363, 439, 1045, 1249
BsrBI CCGCTC 1 cut(s) 752
BsrDI GCAATG 2 cut(s) 501, 1113
BsrI ACTGG 1 cut(s) 356
BssECI CCNNGG 1 cut(s) 1133
BssMI GATC 9 cut(s) 220, 289, 310, 432, 780, 814, 826, 1234, 1465
BssNI GRCGYC 1 cut(s) 364
BssSI CACGAG 1 cut(s) 1034
Bst2BI CACGAG 1 cut(s) 1034
Bst4CI ACNGT 3 cut(s) 155, 380, 1022
Bst6I CTCTTC 1 cut(s) 1271
BstACI GRCGYC 1 cut(s) 364
BstC8I GCNNGC 2 cut(s) 560, 960
BstDEI CTNAG 4 cut(s) 132, 1152, 1223, 1544
BstDSI CCRYGG 1 cut(s) 1133
BstEII GGTNACC 1 cut(s) 121
BstFNI CGCG 5 cut(s) 18, 470, 603, 1135, 1380
BstH2I RGCGCY 2 cut(s) 367, 970
BstHHI GCGC 4 cut(s) 366, 472, 588, 969
BstKTI GATC 9 cut(s) 223, 292, 313, 435, 783, 817, 829, 1237, 1468
BstMAI GTCTC 1 cut(s) 796
BstMBI GATC 9 cut(s) 220, 289, 310, 432, 780, 814, 826, 1234, 1465
BstMWI GCNNNNNNNGC 5 cut(s) 24, 609, 964, 1258, 1537
BstPI GGTNACC 1 cut(s) 121
BstSLI GKGCMC 1 cut(s) 1254
BstUI CGCG 5 cut(s) 18, 470, 603, 1135, 1380
BstV1I GCAGC 3 cut(s) 426, 956, 1527
BstV2I GAAGAC 1 cut(s) 622
BstX2I RGATCY 3 cut(s) 310, 826, 1234
BstYI RGATCY 3 cut(s) 310, 826, 1234
BsuRI GGCC 3 cut(s) 741, 984, 1208
BtgI CCRYGG 1 cut(s) 1133
BtrI CACGTC 1 cut(s) 409
BtsIMutI CAGTG 4 cut(s) 216, 349, 705, 1027
Cac8I GCNNGC 2 cut(s) 560, 960
CciI TCATGA 1 cut(s) 238
CfoI GCGC 4 cut(s) 366, 472, 588, 969
Cfr13I GGNCC 3 cut(s) 465, 740, 1206
Cfr42I CCGCGG 1 cut(s) 1136
CseI GACGC 1 cut(s) 188
Csp6I GTAC 3 cut(s) 151, 156, 1149
CspCI CAANNNNNGTGG 1 cut(s) 35
CviAII CATG 8 cut(s) 239, 267, 293, 360, 436, 462, 1203, 1325
CviQI GTAC 3 cut(s) 151, 156, 1149
DdeI CTNAG 4 cut(s) 132, 1152, 1223, 1544
DinI GGCGCC 1 cut(s) 365
DpnI GATC 9 cut(s) 222, 291, 312, 434, 782, 816, 828, 1236, 1467
DpnII GATC 9 cut(s) 220, 289, 310, 432, 780, 814, 826, 1234, 1465
DraI TTTAAA 1 cut(s) 1363
DriI GACNNNNNGTC 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 982
Eam1104I CTCTTC 1 cut(s) 1271
Eam1105I GACNNNNNGTC 1 cut(s) 144
EarI CTCTTC 1 cut(s) 1271
Eco47I GGWCC 1 cut(s) 465
Eco91I GGTNACC 1 cut(s) 121
EcoO65I GGTNACC 1 cut(s) 121
EcoT22I ATGCAT 1 cut(s) 1326
EgeI GGCGCC 1 cut(s) 365
EheI GGCGCC 1 cut(s) 365
FaeI CATG 8 cut(s) 242, 270, 296, 363, 439, 465, 1206, 1328
FatI CATG 8 cut(s) 238, 266, 292, 359, 435, 461, 1202, 1324
FauI CCCGC 1 cut(s) 1128
FauNDI CATATG 1 cut(s) 1169
FbaI TGATCA 1 cut(s) 780
Fnu4HI GCNGC 5 cut(s) 367, 415, 970, 1133, 1541
Fsp4HI GCNGC 5 cut(s) 367, 415, 970, 1133, 1541
FspBI CTAG 1 cut(s) 861
GlaI GCGC 4 cut(s) 365, 471, 587, 968
GluI GCNGC 5 cut(s) 367, 415, 970, 1133, 1541
GsuI CTGGAG 1 cut(s) 279
HaeII RGCGCY 2 cut(s) 367, 970
HaeIII GGCC 3 cut(s) 741, 984, 1208
HapII CCGG 1 cut(s) 1232
HgaI GACGC 1 cut(s) 188
HhaI GCGC 4 cut(s) 366, 472, 588, 969
Hin1I GRCGYC 1 cut(s) 364
Hin1II CATG 8 cut(s) 242, 270, 296, 363, 439, 465, 1206, 1328
Hin6I GCGC 4 cut(s) 364, 470, 586, 967
HinP1I GCGC 4 cut(s) 364, 470, 586, 967
HindIII AAGCTT 1 cut(s) 327
HinfI GANTC 8 cut(s) 8, 346, 594, 648, 804, 914, 1199, 1375
HpaII CCGG 1 cut(s) 1232
HphI GGTGA 7 cut(s) 133, 500, 710, 1076, 1112, 1186, 1295
Hpy166II GTNNAC 4 cut(s) 940, 1018, 1125, 1229
Hpy188I TCNGA 2 cut(s) 228, 930
Hpy188III TCNNGA 8 cut(s) 239, 710, 808, 1034, 1126, 1163, 1238, 1560
Hpy8I GTNNAC 4 cut(s) 940, 1018, 1125, 1229
Hpy99I CGWCG 1 cut(s) 688
HpyAV CCTTC 6 cut(s) 97, 137, 608, 676, 716, 736
HpyCH4III ACNGT 3 cut(s) 155, 380, 1022
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 6 cut(s) 53, 59, 558, 638, 1324, 1445
HpyF10VI GCNNNNNNNGC 5 cut(s) 24, 609, 964, 1258, 1537
HpyF3I CTNAG 4 cut(s) 132, 1152, 1223, 1544
HpySE526I ACGT 1 cut(s) 408
Hsp92I GRCGYC 1 cut(s) 364
Hsp92II CATG 8 cut(s) 242, 270, 296, 363, 439, 465, 1206, 1328
HspAI GCGC 4 cut(s) 364, 470, 586, 967
KasI GGCGCC 1 cut(s) 363
KpnI GGTACC 1 cut(s) 154
Ksp22I TGATCA 1 cut(s) 780
KspI CCGCGG 1 cut(s) 1136
Kzo9I GATC 9 cut(s) 220, 289, 310, 432, 780, 814, 826, 1234, 1465
LmnI GCTCC 1 cut(s) 1460
Lsp1109I GCAGC 3 cut(s) 426, 956, 1527
LweI GCATC 6 cut(s) 36, 763, 1119, 1200, 1432, 1501
MaeI CTAG 1 cut(s) 861
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 7 cut(s) 121, 184, 214, 455, 488, 659, 700
MalI GATC 9 cut(s) 222, 291, 312, 434, 782, 816, 828, 1236, 1467
MbiI CCGCTC 1 cut(s) 752
MboI GATC 9 cut(s) 220, 289, 310, 432, 780, 814, 826, 1234, 1465
MboII GAAGA 2 cut(s) 622, 1288
MfeI CAATTG 4 cut(s) 141, 473, 573, 735
MflI RGATCY 3 cut(s) 310, 826, 1234
MhlI GDGCHC 2 cut(s) 1254, 1533
Mly113I GGCGCC 1 cut(s) 364
MlyI GAGTC 2 cut(s) 642, 798
Mph1103I ATGCAT 1 cut(s) 1326
MroXI GAANNNNTTC 1 cut(s) 12
MseI TTAA 2 cut(s) 371, 1362
MslI CAYNNNNRTG 2 cut(s) 1118, 1172
MspA1I CMGCKG 1 cut(s) 1135
MspI CCGG 1 cut(s) 1232
MunI CAATTG 4 cut(s) 141, 473, 573, 735
MvnI CGCG 5 cut(s) 18, 470, 603, 1135, 1380
MwoI GCNNNNNNNGC 5 cut(s) 24, 609, 964, 1258, 1537
NarI GGCGCC 1 cut(s) 364
NdeI CATATG 1 cut(s) 1169
NdeII GATC 9 cut(s) 220, 289, 310, 432, 780, 814, 826, 1234, 1465
NlaIII CATG 8 cut(s) 242, 270, 296, 363, 439, 465, 1206, 1328
NlaIV GGNNCC 8 cut(s) 152, 312, 365, 441, 828, 1047, 1236, 1251
NmuCI GTSAC 5 cut(s) 121, 184, 214, 488, 700
NsiI ATGCAT 1 cut(s) 1326
PagI TCATGA 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 12
PfeI GAWTC 6 cut(s) 8, 346, 594, 914, 1199, 1375
PflFI GACNNNGTC 1 cut(s) 1436
PkrI GCNGC 5 cut(s) 368, 416, 971, 1134, 1542
PleI GAGTC 2 cut(s) 642, 798
PluTI GGCGCC 1 cut(s) 367
PpsI GAGTC 2 cut(s) 642, 798
PspEI GGTNACC 1 cut(s) 121
PspN4I GGNNCC 8 cut(s) 152, 312, 365, 441, 828, 1047, 1236, 1251
PspPI GGNCC 3 cut(s) 465, 740, 1206
PsrI GAACNNNNNNTAC 4 cut(s) 265, 297, 868, 900
PsuI RGATCY 3 cut(s) 310, 826, 1234
PsyI GACNNNGTC 1 cut(s) 1436
RsaI GTAC 3 cut(s) 152, 157, 1150
RsaNI GTAC 3 cut(s) 151, 156, 1149
RseI CAYNNNNRTG 2 cut(s) 1118, 1172
SacII CCGCGG 1 cut(s) 1136
SaqAI TTAA 2 cut(s) 371, 1362
SatI GCNGC 5 cut(s) 367, 415, 970, 1133, 1541
Sau3AI GATC 9 cut(s) 220, 289, 310, 432, 780, 814, 826, 1234, 1465
Sau96I GGNCC 3 cut(s) 465, 740, 1206
SchI GAGTC 2 cut(s) 642, 798
SduI GDGCHC 2 cut(s) 1254, 1533
SfaNI GCATC 6 cut(s) 36, 763, 1119, 1200, 1432, 1501
SfoI GGCGCC 1 cut(s) 365
Sfr303I CCGCGG 1 cut(s) 1136
SgrBI CCGCGG 1 cut(s) 1136
SinI GGWCC 1 cut(s) 465
SmiMI CAYNNNNRTG 2 cut(s) 1118, 1172
SsiI CCGC 6 cut(s) 367, 468, 750, 1133, 1135, 1380
SspDI GGCGCC 1 cut(s) 363
SspI AATATT 2 cut(s) 96, 675
SspMI CTAG 1 cut(s) 861
TaaI ACNGT 3 cut(s) 155, 380, 1022
TaiI ACGT 1 cut(s) 411
TaqI TCGA 5 cut(s) 686, 729, 1194, 1301, 1440
TaqII GACCGA 1 cut(s) 827
TatI WGTACW 1 cut(s) 1148
TauI GCSGC 2 cut(s) 369, 1135
TfiI GAWTC 6 cut(s) 8, 346, 594, 914, 1199, 1375
Tru1I TTAA 2 cut(s) 371, 1362
Tru9I TTAA 2 cut(s) 371, 1362
TscAI CASTG 4 cut(s) 223, 356, 705, 1027
TseFI GTSAC 5 cut(s) 121, 184, 214, 488, 700
TseI GCWGC 3 cut(s) 414, 969, 1540
Tsp45I GTSAC 5 cut(s) 121, 184, 214, 488, 700
TspRI CASTG 4 cut(s) 223, 356, 705, 1027
Tth111I GACNNNGTC 1 cut(s) 1436
VpaK11BI GGWCC 1 cut(s) 465
XapI RAATTY 2 cut(s) 923, 994
XmnI GAANNNNTTC 1 cut(s) 12
XspI CTAG 1 cut(s) 861
Zsp2I ATGCAT 1 cut(s) 1326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.