Rh5DG494400

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000068
Physical Location & Seq
Reverse (-)
77559043 .. 77560963
1921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG494400.1

Sequence Viewer

Length: 315 bp
ATGGATGCACGCACTCCCCAGGCTTTTGTTAATGGGGCTCTTCATTGGCACGCAAAGCGGCAGAAAGAAGATGATTTTTACTATTTCATTTTGATATTTGATGTGGGAAGGGGCTTATTTCGCGAGACCATGATGCCAGAGAGTTTGAAATGCGATACTCAATTAACATTGCAATTGTCTGTTTCTGGAGATGGGGAGTCCATTGCTCTGTTCAGCATCCCTATAGATCCCAAGCTAGCAAGTTTAGATTTGATTCCAGCTTCTGATAGGCAGTTGGTATATAGGAAAGAACAGATGAAAGGGAAAGAGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

104

Amino Acids

11.88

Weight (kDa)

5.61

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 123
AciI CCGC 1 cut(s) 58
AclWI GGATC 1 cut(s) 221
AgsI TTSAA 1 cut(s) 148
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 2 cut(s) 235, 260
AluI AGCT 2 cut(s) 235, 260
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 1 cut(s) 221
AlwNI CAGNNNCTG 1 cut(s) 263
AsuNHI GCTAGC 1 cut(s) 235
BanII GRGCYC 1 cut(s) 40
BccI CCATC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 2 cut(s) 236, 313
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
Bme1390I CCNGG 1 cut(s) 20
BmrFI CCNGG 1 cut(s) 20
BmsI GCATC 2 cut(s) 123, 225
BmtI GCTAGC 1 cut(s) 239
BpmI CTGGAG 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 18
Bse3DI GCAATG 2 cut(s) 167, 201
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 2 cut(s) 10, 216
BseMI GCAATG 2 cut(s) 167, 201
Bsh1236I CGCG 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 119
Bso31I GGTCTC 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 1 cut(s) 226
Bsp68I TCGCGA 1 cut(s) 123
BspACI CCGC 1 cut(s) 58
BspFNI CGCG 1 cut(s) 123
BspOI GCTAGC 1 cut(s) 239
BspPI GGATC 1 cut(s) 221
BspQI GCTCTTC 1 cut(s) 45
BspTNI GGTCTC 1 cut(s) 119
BsrDI GCAATG 2 cut(s) 167, 201
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 45
BstC8I GCNNGC 3 cut(s) 10, 51, 237
BstF5I GGATG 2 cut(s) 10, 216
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 1 cut(s) 229
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 2 cut(s) 55, 120
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 1 cut(s) 222
BstUI CGCG 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BtsCI GGATG 2 cut(s) 10, 216
BtuMI TCGCGA 1 cut(s) 123
Cac8I GCNNGC 3 cut(s) 10, 51, 237
CaiI CAGNNNCTG 1 cut(s) 263
CviAII CATG 1 cut(s) 130
CviJI RGCY 5 cut(s) 23, 38, 114, 235, 260
CviKI_1 RGCY 5 cut(s) 23, 38, 114, 235, 260
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 40
Eco31I GGTCTC 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 18
EcoT38I GRGCYC 1 cut(s) 40
FaeI CATG 1 cut(s) 133
FaiI YATR 4 cut(s) 131, 224, 280, 282
FatI CATG 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 59
FokI GGATG 2 cut(s) 17, 203
FriOI GRGCYC 1 cut(s) 40
Fsp4HI GCNGC 1 cut(s) 59
FspBI CTAG 2 cut(s) 236, 313
GluI GCNGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 207
Hin1II CATG 1 cut(s) 133
HinfI GANTC 2 cut(s) 197, 253
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 2 cut(s) 122, 186
HpyAV CCTTC 1 cut(s) 102
HpyCH4V TGCA 2 cut(s) 8, 172
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 120
Hsp92II CATG 1 cut(s) 133
Kzo9I GATC 1 cut(s) 226
LguI GCTCTTC 1 cut(s) 45
LpnPI CCDG 5 cut(s) 5, 32, 150, 171, 270
LweI GCATC 2 cut(s) 123, 225
MaeI CTAG 2 cut(s) 236, 313
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 2 cut(s) 32, 80
MfeI CAATTG 1 cut(s) 173
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 2 cut(s) 161, 173
MlyI GAGTC 1 cut(s) 206
MseI TTAA 2 cut(s) 30, 164
MspR9I CCNGG 1 cut(s) 20
MunI CAATTG 1 cut(s) 173
MvaI CCWGG 1 cut(s) 20
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 2 cut(s) 55, 120
NdeII GATC 1 cut(s) 226
NheI GCTAGC 1 cut(s) 235
NlaIII CATG 1 cut(s) 133
NruI TCGCGA 1 cut(s) 123
PciSI GCTCTTC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 253
PkrI GCNGC 1 cut(s) 60
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PstNI CAGNNNCTG 1 cut(s) 263
PsuI RGATCY 1 cut(s) 226
RruI TCGCGA 1 cut(s) 123
SapI GCTCTTC 1 cut(s) 45
SaqAI TTAA 2 cut(s) 30, 164
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 1 cut(s) 226
SchI GAGTC 1 cut(s) 206
ScrFI CCNGG 1 cut(s) 20
SduI GDGCHC 1 cut(s) 40
SetI ASST 2 cut(s) 237, 262
SfaNI GCATC 2 cut(s) 123, 225
SfcI CTRYAG 1 cut(s) 222
Sse9I AATT 2 cut(s) 161, 173
SsiI CCGC 1 cut(s) 58
SspMI CTAG 2 cut(s) 236, 313
StyD4I CCNGG 1 cut(s) 18
TasI AATT 2 cut(s) 161, 173
TauI GCSGC 1 cut(s) 61
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 2 cut(s) 30, 164
Tru9I TTAA 2 cut(s) 30, 164
TspDTI ATGAA 3 cut(s) 32, 76, 311
XspI CTAG 2 cut(s) 236, 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.