Rroxscaffold_1G00049120

F-box kelch-repeat protein At3g23880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000068
Physical Location & Seq
Forward (+)
69304709 .. 69309137
4429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00049120.1

Sequence Viewer

Length: 1857 bp
ATGCTTCGTCTTCCCCCTCCATGTTTAGTGAATAGCTCCCGGGTCCAGGTTTTAATCAATGGGGCACTGCACTGGCTGGCTATCTGTTGGACGGATGATCATCAAATAAAGTATTTGGTTATGGCATTTGATGTGGGAGGTCAGTCATTTCGAAAGATAATGCTGCCTGAGAGCCTCCAACTGGATGAGTTATTGGAGTTCAGGTTGGGTGTTTCGGGAGACAGAAAATCCATTGGTCTGTTTGTGCGGTGCAAGAGTGAGACTAATTGTTTTCTTGATATATGGGTAATGAAGGAGTATTGCGTAGTGGACCAAATTGATGATTCTCACTCCACAAGGTTTCTTTTGTTGACTCGTATGAAGAGAGCCTACTCTTGCTTGACAGGCAGGATGCAATTTCTTACTGAGGGGAAAGAAGAGCGCAAAACAAAGTTTAGTATTCTCTTGCTTTCGATGTTGTTTTATATAATCTCCTGTCTTAGGTCAAGGGGGGTTTCGCCGACTCCGACGCCTCCTTCTCACTCCGTCGCCGCCGTCCATCTGCCGAGCACTCTCGCCAGAATCTTGCCAAGGTACATCCCTCTCTCAATCCCCGCCTCCGTCTCTAAAGTTGGTTCCGCCATGAATGACCATAAAATTGCTGCAATTGAATTGAAATCTGAGGCAGGATTGGATTATTTTCCTCAAGAAATCATCTCCAATATCCTAATTAGATTACCTGTTAAGTCTTTGATCAAATGCACCTCCGTCTGCAAGTCTTGGAAATCTTTGATCCAAAACCCTAGCTTTATTGATGCACATCTTAGCCACAGAATCAGTTGTAATAACCAGGATGGCACTCACCTCCTACTAGTCCACAGTGTTTGTAGTAAAAGATTTTGCAGCTTATTCGACAGAGAGTTGGTTAGAGGTGAAAAGGAAGACCTTTACTCTTTGTACTATGATAACCATGGATTTAATGAGTACTGCAAGATTGAATTGCCTAGTGATCTTGAGGAAATTATGCTCAGTTCGTGTTTCCGTGTGGTCGGTACTTGTAATGGACTAGTATGCCTTGTGGATGAATTAGGGTGTCATGGTTGCAACTTGATCATATGGAATCCTTGTGTAAGAAAGTTTGTAAAACTACCTGAACCTGCTATGCTGCACGGTGGTTGTGATGCCTCTGTTGGCTTTGGTTATGATGCCACAAGCAATGACTACAAGGTTGTGAGACTTGTCACGCTTTCGGATCAATATCAGAATTTCCATGAGTGGCCAACTCTATTTCAGGTTTATTCACTGGCCACAGGCTTGTGGAGCAGGCTTCGTTCTGATCTTCCTCTGTGTCAAATGCTTTGCTCCCCACCCCAGGCTTTTGTAAATGGGGCACTTCACTGGTCTGCAATCCGCTGGACAAATGATGCTTTCAACTATTTTGTTCTGGCTTTTGATGTGGGCAGTGAGTTGTTTCAAGGGATAATGTTCCCGAAGAGTCTGAAATCAGATCCATCATTGGAATTGCGAATATCTGTTTCTGGAGATGGGAAATCCATTGCTGTCTTCACTGATTGGCGCAAGAGTCATACCAATTATTTTCTTGATGTATGGGTAATGAAAGAGTACTGCATGGAGAATTCGTGGACCAAATTGATGATTCTCAGTGCAGAAGTTCCACAAAGAAATTTACCCAAGGCATTGTGTTTCAGGAAGATAGGTGAAGTGTTGGTGCTTGAAGACAGCTACGAACTAGTTTCACTTGACATTATGAGCAGAAAAGTTAAAACTCTTGGGGTTTATGGAGGTCAGTATTGCTCTGTTGACTCTTATGAAGAGAGCCTTGTATTACTTGATAGGAAATATGGTGTTTCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

618

Amino Acids

70.15

Weight (kDa)

7.45

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 227 - 263 9.6e-09 F-box domain
F-box-like PF12937 228 - 262 1.8e-07 F-box-like
FBA_3 PF08268 338 - 550 2.6e-19 F-box associated beta propeller domain
FBA_1 PF07734 339 - 554 6.9e-25 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 342 - 557 3e-10 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1144
AciI CCGC 5 cut(s) 247, 531, 594, 618, 1390
AclWI GGATC 3 cut(s) 766, 1239, 1481
AcoI YGGCCR 2 cut(s) 1256, 1284
AcsI RAATTY 3 cut(s) 1243, 1615, 1663
AcyI GRCGYC 1 cut(s) 509
AfaI GTAC 5 cut(s) 575, 938, 965, 1033, 1604
AfiI CCNNNNNNNGG 4 cut(s) 46, 181, 480, 1351
AgsI TTSAA 6 cut(s) 650, 655, 977, 1411, 1454, 1715
AhlI ACTAGT 3 cut(s) 850, 1045, 1729
AjnI CCWGG 3 cut(s) 45, 828, 1350
AluBI AGCT 4 cut(s) 36, 786, 885, 1722
AluI AGCT 4 cut(s) 36, 786, 885, 1722
Alw21I GWGCWC 1 cut(s) 551
Alw26I GTCTC 4 cut(s) 213, 254, 607, 1207
AlwI GGATC 3 cut(s) 766, 1239, 1481
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 2 cut(s) 1256, 1284
ApeKI GCWGC 4 cut(s) 163, 641, 882, 1144
ApoI RAATTY 3 cut(s) 1243, 1615, 1663
AspLEI GCGC 2 cut(s) 423, 1557
AspS9I GGNCC 3 cut(s) 43, 310, 1623
AsuC2I CCSGG 2 cut(s) 40, 41
AsuHPI GGTGA 3 cut(s) 833, 923, 1709
AsuII TTCGAA 1 cut(s) 151
AvaI CYCGRG 1 cut(s) 39
AvaII GGWCC 3 cut(s) 43, 310, 1623
BaeGI GKGCMC 2 cut(s) 67, 1372
BalI TGGCCA 2 cut(s) 1258, 1286
BarI GAAGNNNNNNTAC 2 cut(s) 353, 385
BbsI GAAGAC 4 cut(s) 2, 927, 1534, 1722
Bbv12I GWGCWC 1 cut(s) 551
BbvI GCAGC 4 cut(s) 150, 628, 894, 1131
BccI CCATC 4 cut(s) 546, 827, 1498, 1517
BceAI ACGGC 1 cut(s) 518
BcgI CGANNNNNNTGC 2 cut(s) 871, 905
BciT130I CCWGG 3 cut(s) 47, 830, 1352
BclI TGATCA 3 cut(s) 97, 732, 1089
BcnI CCSGG 2 cut(s) 40, 41
BcoDI GTCTC 4 cut(s) 213, 254, 607, 1207
BcuI ACTAGT 3 cut(s) 850, 1045, 1729
BfaI CTAG 5 cut(s) 783, 851, 984, 1046, 1730
BfuAI ACCTGC 1 cut(s) 1144
BisI GCNGC 5 cut(s) 164, 531, 642, 883, 1145
BlsI GCNGC 5 cut(s) 165, 532, 643, 884, 1146
BmcAI AGTACT 2 cut(s) 965, 1604
Bme1390I CCNGG 5 cut(s) 40, 41, 47, 830, 1352
Bme18I GGWCC 3 cut(s) 43, 310, 1623
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 3 cut(s) 43, 310, 1623
BmiI GGNNCC 2 cut(s) 44, 616
BmrFI CCNGG 5 cut(s) 40, 41, 47, 830, 1352
BmsI GCATC 5 cut(s) 381, 784, 1150, 1174, 1393
BpiI GAAGAC 4 cut(s) 2, 927, 1534, 1722
BpmI CTGGAG 1 cut(s) 1539
Bpu14I TTCGAA 1 cut(s) 151
BpuEI CTTGAG 2 cut(s) 669, 1013
BpuMI CCSGG 2 cut(s) 40, 41
BsaBI GATNNNNATC 3 cut(s) 99, 798, 1236
BsaHI GRCGYC 1 cut(s) 509
BsaJI CCNNGG 5 cut(s) 39, 569, 949, 1350, 1671
BsaXI ACNNNNNCTCC 4 cut(s) 188, 218, 1604, 1634
Bsc4I CCNNNNNNNGG 4 cut(s) 46, 181, 480, 1351
Bse1I ACTGG 4 cut(s) 77, 186, 1287, 1382
Bse3DI GCAATG 2 cut(s) 1201, 1533
Bse8I GATNNNNATC 3 cut(s) 99, 798, 1236
BseBI CCWGG 3 cut(s) 47, 830, 1352
BseDI CCNNGG 5 cut(s) 39, 569, 949, 1350, 1671
BseGI GGATG 6 cut(s) 100, 190, 396, 576, 838, 1066
BseJI GATNNNNATC 3 cut(s) 99, 798, 1236
BseLI CCNNNNNNNGG 4 cut(s) 46, 181, 480, 1351
BseMI GCAATG 2 cut(s) 1201, 1533
BseMII CTCAG 5 cut(s) 159, 396, 651, 1021, 1654
BseNI ACTGG 4 cut(s) 77, 186, 1287, 1382
BseSI GKGCMC 2 cut(s) 67, 1372
BseXI GCAGC 4 cut(s) 150, 628, 894, 1131
BsgI GTGCAG 3 cut(s) 53, 1130, 1665
BshFI GGCC 2 cut(s) 1258, 1286
BsiHKAI GWGCWC 1 cut(s) 551
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 1 cut(s) 40
BslI CCNNNNNNNGG 4 cut(s) 46, 181, 480, 1351
BsmAI GTCTC 4 cut(s) 213, 254, 607, 1207
BsmBI CGTCTC 1 cut(s) 607
BsnI GGCC 2 cut(s) 1258, 1286
BsoBI CYCGRG 1 cut(s) 39
Bsp119I TTCGAA 1 cut(s) 151
Bsp1286I GDGCHC 3 cut(s) 67, 551, 1372
Bsp143I GATC 8 cut(s) 97, 732, 771, 988, 1089, 1231, 1315, 1486
Bsp19I CCATGG 1 cut(s) 949
BspACI CCGC 5 cut(s) 247, 531, 594, 618, 1390
BspANI GGCC 2 cut(s) 1258, 1286
BspCNI CTCAG 5 cut(s) 160, 397, 652, 1020, 1653
BspLI GGNNCC 2 cut(s) 44, 616
BspMI ACCTGC 1 cut(s) 1144
BspPI GGATC 3 cut(s) 766, 1239, 1481
BspQI GCTCTTC 1 cut(s) 411
BspT104I TTCGAA 1 cut(s) 151
BsrDI GCAATG 2 cut(s) 1201, 1533
BsrI ACTGG 4 cut(s) 77, 186, 1287, 1382
BssECI CCNNGG 5 cut(s) 39, 569, 949, 1350, 1671
BssMI GATC 8 cut(s) 97, 732, 771, 988, 1089, 1231, 1315, 1486
BssNI GRCGYC 1 cut(s) 509
BssT1I CCWWGG 3 cut(s) 569, 949, 1671
Bst2UI CCWGG 3 cut(s) 47, 830, 1352
Bst4CI ACNGT 2 cut(s) 860, 1151
Bst6I CTCTTC 4 cut(s) 356, 411, 1466, 1806
BstACI GRCGYC 1 cut(s) 509
BstBI TTCGAA 1 cut(s) 151
BstC8I GCNNGC 2 cut(s) 78, 1304
BstDEI CTNAG 7 cut(s) 168, 405, 479, 660, 803, 1007, 1640
BstDSI CCRYGG 1 cut(s) 949
BstENI CCTNNNNNAGG 1 cut(s) 478
BstF5I GGATG 6 cut(s) 100, 190, 396, 576, 838, 1066
BstHHI GCGC 2 cut(s) 423, 1557
BstKTI GATC 8 cut(s) 100, 735, 774, 991, 1092, 1234, 1318, 1489
BstMAI GTCTC 4 cut(s) 213, 254, 607, 1207
BstMBI GATC 8 cut(s) 97, 732, 771, 988, 1089, 1231, 1315, 1486
BstMWI GCNNNNNNNGC 2 cut(s) 384, 1299
BstNI CCWGG 3 cut(s) 47, 830, 1352
BstSCI CCNGG 5 cut(s) 38, 39, 45, 828, 1350
BstSLI GKGCMC 2 cut(s) 67, 1372
BstV1I GCAGC 4 cut(s) 150, 628, 894, 1131
BstV2I GAAGAC 4 cut(s) 2, 927, 1534, 1722
BstX2I RGATCY 1 cut(s) 1486
BstYI RGATCY 1 cut(s) 1486
BsuRI GGCC 2 cut(s) 1258, 1286
BtgI CCRYGG 1 cut(s) 949
BtsCI GGATG 6 cut(s) 100, 190, 396, 576, 838, 1066
BtsI GCAGTG 2 cut(s) 65, 1447
BtsIMutI CAGTG 8 cut(s) 65, 70, 865, 1280, 1375, 1447, 1545, 1648
BveI ACCTGC 1 cut(s) 1144
Cac8I GCNNGC 2 cut(s) 78, 1304
CfoI GCGC 2 cut(s) 423, 1557
Cfr13I GGNCC 3 cut(s) 43, 310, 1623
Cfr9I CCCGGG 1 cut(s) 39
CseI GACGC 1 cut(s) 517
Csp6I GTAC 5 cut(s) 574, 937, 964, 1032, 1603
CspCI CAANNNNNGTGG 2 cut(s) 845, 880
CviAII CATG 6 cut(s) 21, 622, 950, 1076, 1250, 1609
CviQI GTAC 5 cut(s) 574, 937, 964, 1032, 1603
DdeI CTNAG 7 cut(s) 168, 405, 479, 660, 803, 1007, 1640
DpnI GATC 8 cut(s) 99, 734, 773, 990, 1091, 1233, 1317, 1488
DpnII GATC 8 cut(s) 97, 732, 771, 988, 1089, 1231, 1315, 1486
EaeI YGGCCR 2 cut(s) 1256, 1284
Eam1104I CTCTTC 4 cut(s) 356, 411, 1466, 1806
EarI CTCTTC 4 cut(s) 356, 411, 1466, 1806
EciI GGCGGA 1 cut(s) 607
Eco130I CCWWGG 3 cut(s) 569, 949, 1671
Eco47I GGWCC 3 cut(s) 43, 310, 1623
Eco88I CYCGRG 1 cut(s) 39
EcoNI CCTNNNNNAGG 1 cut(s) 478
EcoRI GAATTC 1 cut(s) 1615
EcoRII CCWGG 3 cut(s) 45, 828, 1350
EcoT14I CCWWGG 3 cut(s) 569, 949, 1671
ErhI CCWWGG 3 cut(s) 569, 949, 1671
Esp3I CGTCTC 1 cut(s) 607
FaeI CATG 6 cut(s) 24, 625, 953, 1079, 1253, 1612
FalI AAGNNNNNCTT 2 cut(s) 1803, 1835
FatI CATG 6 cut(s) 20, 621, 949, 1075, 1249, 1608
FauI CCCGC 1 cut(s) 601
FauNDI CATATG 1 cut(s) 1094
FbaI TGATCA 3 cut(s) 97, 732, 1089
Fnu4HI GCNGC 5 cut(s) 164, 531, 642, 883, 1145
FokI GGATG 6 cut(s) 107, 197, 403, 563, 845, 1073
Fsp4HI GCNGC 5 cut(s) 164, 531, 642, 883, 1145
FspBI CTAG 5 cut(s) 783, 851, 984, 1046, 1730
GlaI GCGC 2 cut(s) 422, 1556
GluI GCNGC 5 cut(s) 164, 531, 642, 883, 1145
GsuI CTGGAG 1 cut(s) 1539
HaeIII GGCC 2 cut(s) 1258, 1286
HapII CCGG 1 cut(s) 40
HgaI GACGC 1 cut(s) 517
HhaI GCGC 2 cut(s) 423, 1557
Hin1I GRCGYC 1 cut(s) 509
Hin1II CATG 6 cut(s) 24, 625, 953, 1079, 1253, 1612
Hin6I GCGC 2 cut(s) 421, 1555
HinP1I GCGC 2 cut(s) 421, 1555
HincII GTYRAC 2 cut(s) 351, 1801
HindII GTYRAC 2 cut(s) 351, 1801
HpaII CCGG 1 cut(s) 40
HphI GGTGA 3 cut(s) 833, 923, 1709
Hpy166II GTNNAC 5 cut(s) 310, 351, 856, 1623, 1801
Hpy188I TCNGA 7 cut(s) 507, 661, 1231, 1242, 1315, 1479, 1486
Hpy188III TCNNGA 8 cut(s) 216, 275, 686, 992, 1468, 1518, 1580, 1687
Hpy8I GTNNAC 5 cut(s) 310, 351, 856, 1623, 1801
Hpy99I CGWCG 2 cut(s) 511, 530
HpyAV CCTTC 2 cut(s) 286, 525
HpyCH4III ACNGT 2 cut(s) 860, 1151
HpyF10VI GCNNNNNNNGC 2 cut(s) 384, 1299
HpyF3I CTNAG 7 cut(s) 168, 405, 479, 660, 803, 1007, 1640
Hsp92I GRCGYC 1 cut(s) 509
Hsp92II CATG 6 cut(s) 24, 625, 953, 1079, 1253, 1612
HspAI GCGC 2 cut(s) 421, 1555
Ksp22I TGATCA 3 cut(s) 97, 732, 1089
Kzo9I GATC 8 cut(s) 97, 732, 771, 988, 1089, 1231, 1315, 1486
LguI GCTCTTC 1 cut(s) 411
LmnI GCTCC 3 cut(s) 41, 1299, 1346
Lsp1109I GCAGC 4 cut(s) 150, 628, 894, 1131
LweI GCATC 5 cut(s) 381, 784, 1150, 1174, 1393
MaeI CTAG 5 cut(s) 783, 851, 984, 1046, 1730
MaeIII GTNAC 1 cut(s) 1219
MalI GATC 8 cut(s) 99, 734, 773, 990, 1091, 1233, 1317, 1488
MboI GATC 8 cut(s) 97, 732, 771, 988, 1089, 1231, 1315, 1486
MboII GAAGA 9 cut(s) 373, 428, 932, 1310, 1483, 1534, 1702, 1727, 1823
MfeI CAATTG 1 cut(s) 645
MflI RGATCY 1 cut(s) 1486
MhlI GDGCHC 3 cut(s) 67, 551, 1372
MlsI TGGCCA 2 cut(s) 1258, 1286
MluNI TGGCCA 2 cut(s) 1258, 1286
MlyI GAGTC 5 cut(s) 346, 496, 1483, 1570, 1796
MmeI TCCRAC 3 cut(s) 68, 202, 530
Mox20I TGGCCA 2 cut(s) 1258, 1286
MscI TGGCCA 2 cut(s) 1258, 1286
MseI TTAA 4 cut(s) 53, 723, 957, 1761
Msp20I TGGCCA 2 cut(s) 1258, 1286
MspA1I CMGCKG 1 cut(s) 1392
MspI CCGG 1 cut(s) 40
MspR9I CCNGG 5 cut(s) 40, 41, 47, 830, 1352
MunI CAATTG 1 cut(s) 645
MvaI CCWGG 3 cut(s) 47, 830, 1352
MwoI GCNNNNNNNGC 2 cut(s) 384, 1299
NciI CCSGG 2 cut(s) 40, 41
NcoI CCATGG 1 cut(s) 949
NdeI CATATG 1 cut(s) 1094
NdeII GATC 8 cut(s) 97, 732, 771, 988, 1089, 1231, 1315, 1486
NlaIII CATG 6 cut(s) 24, 625, 953, 1079, 1253, 1612
NlaIV GGNNCC 2 cut(s) 44, 616
NmeAIII GCCGAG 1 cut(s) 570
NmuCI GTSAC 1 cut(s) 1219
NspV TTCGAA 1 cut(s) 151
PciSI GCTCTTC 1 cut(s) 411
PcsI WCGNNNNNNNCGW 1 cut(s) 503
PfeI GAWTC 5 cut(s) 323, 561, 813, 1099, 1636
PkrI GCNGC 5 cut(s) 165, 532, 643, 884, 1146
PleI GAGTC 5 cut(s) 346, 496, 1482, 1569, 1796
PpsI GAGTC 5 cut(s) 346, 496, 1482, 1569, 1796
Psp6I CCWGG 3 cut(s) 45, 828, 1350
PspGI CCWGG 3 cut(s) 45, 828, 1350
PspN4I GGNNCC 2 cut(s) 44, 616
PspPI GGNCC 3 cut(s) 43, 310, 1623
PsuI RGATCY 1 cut(s) 1486
RsaI GTAC 5 cut(s) 575, 938, 965, 1033, 1604
RsaNI GTAC 5 cut(s) 574, 937, 964, 1032, 1603
SapI GCTCTTC 1 cut(s) 411
SaqAI TTAA 4 cut(s) 53, 723, 957, 1761
SatI GCNGC 5 cut(s) 164, 531, 642, 883, 1145
Sau3AI GATC 8 cut(s) 97, 732, 771, 988, 1089, 1231, 1315, 1486
Sau96I GGNCC 3 cut(s) 43, 310, 1623
ScaI AGTACT 2 cut(s) 965, 1604
SchI GAGTC 5 cut(s) 346, 496, 1483, 1570, 1796
ScrFI CCNGG 5 cut(s) 40, 41, 47, 830, 1352
SduI GDGCHC 3 cut(s) 67, 551, 1372
SfaNI GCATC 5 cut(s) 381, 784, 1150, 1174, 1393
SfuI TTCGAA 1 cut(s) 151
SinI GGWCC 3 cut(s) 43, 310, 1623
SmaI CCCGGG 1 cut(s) 41
SmlI CTYRAG 2 cut(s) 684, 992
SmoI CTYRAG 2 cut(s) 684, 992
SpeI ACTAGT 3 cut(s) 850, 1045, 1729
SsiI CCGC 5 cut(s) 247, 531, 594, 618, 1390
SspMI CTAG 5 cut(s) 783, 851, 984, 1046, 1730
StyD4I CCNGG 5 cut(s) 38, 39, 45, 828, 1350
StyI CCWWGG 3 cut(s) 569, 949, 1671
TaaI ACNGT 2 cut(s) 860, 1151
TaqI TCGA 3 cut(s) 151, 452, 891
TatI WGTACW 3 cut(s) 936, 963, 1602
TauI GCSGC 1 cut(s) 533
TfiI GAWTC 5 cut(s) 323, 561, 813, 1099, 1636
Tru1I TTAA 4 cut(s) 53, 723, 957, 1761
Tru9I TTAA 4 cut(s) 53, 723, 957, 1761
TscAI CASTG 8 cut(s) 72, 77, 865, 1287, 1382, 1447, 1552, 1648
TseFI GTSAC 1 cut(s) 1219
TseI GCWGC 4 cut(s) 163, 641, 882, 1144
Tsp45I GTSAC 1 cut(s) 1219
TspDTI ATGAA 6 cut(s) 305, 374, 638, 1077, 1610, 1824
TspGWI ACGGA 5 cut(s) 107, 514, 589, 736, 1010
TspMI CCCGGG 1 cut(s) 39
TspRI CASTG 8 cut(s) 72, 77, 865, 1287, 1382, 1447, 1552, 1648
VpaK11BI GGWCC 3 cut(s) 43, 310, 1623
XagI CCTNNNNNAGG 1 cut(s) 478
XapI RAATTY 3 cut(s) 1243, 1615, 1663
XmaI CCCGGG 1 cut(s) 39
XspI CTAG 5 cut(s) 783, 851, 984, 1046, 1730
ZrmI AGTACT 2 cut(s) 965, 1604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.