MD03G1028300.v1.1

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000068
Physical Location & Seq
Forward (+)
2325278 .. 2327876
2599 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1028300.v1.1.491

Sequence Viewer

Length: 1251 bp
ATGATTCACAAATTTCCTGAGGAAATCATACATGATATCCTGTTTAGATTACCTCCTAAAACGTTGATCAGATGCACCCCAGTGTGCAAGCCATGGAACTCCATGATAAAAAATCCCAGCTTCATACGAACCCACCTCAACCGTACAATCAATCTTAATAACCAGTTTGGCACCCACCTCCGCCTACTCCACTGTGTTCCTGGAGATATTCTTTCCAGCAACGTCAATATTAGCGTAGACGAGCCAAGGGAGGAGCAGTTCTATTTGCATTATGACAACCATGCTTTTGATGAGTACTGCAAGCTGGAATTTCCAATTTTTCCCAGGGAAGAAATGCACAATAAATTTCTTCGGGTGGTCGGCATTTGTAATGGACTGGTGTTCCTTGCTGATGATAAGGATTGTTTAGGTTATACCTTCATGTTATGCAACCCGTCTATGAGAAAGTCAGTGACCCTACCTAAGCCTCATCTTACCTTCAACACAATTGGCCCTTATTATGCTTGTATTGGTTTTGGTTTTGAAGCTGTGACTAATGACTACAAGGTTGTCAGACTTATCACTGATCAATGTGAGGATCCAAATACTTTTTATGAGGTTTATTCACTTGCTGGTGGCTCATGGAGTGAGCCTCGTTCTTTGGATCACGTATGTGAAGTTACAGATCCTCGTAAACCCCAAGCTTTTGTTAATGGAGCCATTCATTGGGAGGCATGTCGCCGTTTGAAAAATGGTGATTATGAAGATTTCATTTTGGCATATGACTTGGGCAGCGATTCATTTCGTGGGATAATGGCACCAAAGAGTTTCCGTAGCTCATGGACCACGCAGTTGTCTGTTTACGGGAAATCCATTGCTTTGTTTCAGCCTTATTTGACTAATACCGAAAAGCTTTGTCTTGATATATGGGTGATGAAAGAATATGGCAAGGAAGAGTCATGGACCAAATTGACAACTCTAAGTCCATCAGGTCCACAAAGAGGAGTTCGCTACAGGCCATTATGTTTTAGGAAGTGTGGTGATGTAGTGTTGGCACCAACTTATGGTTATTGGGATGATACTGGCAGGCATGAATTAGTTTGTCTCGACCTTATGAGCAAGCAATTTAAGAATCTTGGAATTCATGGACATAGATATTACTATGCTGAATCTTATGTTGAGAGCCTCGTCTTACTTGACAAGACCAATGCAGTCGAAAATGGGGCAGATAACCTTCAAGACTTTTACAATGTCTTCTCAGTAGCTGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

417

Amino Acids

47.97

Weight (kDa)

6.28

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 42 5.8e-08 F-box domain
F-box-like PF12937 6 - 44 7.6e-08 F-box-like
FBA_3 PF08268 115 - 380 8.6e-21 F-box associated beta propeller domain
FBA_1 PF07734 115 - 323 7.8e-20 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 170, 796, 1033
AccB7I CCANNNNNTGG 2 cut(s) 705, 1043
AccI GTMKAC 1 cut(s) 237
AciI CCGC 1 cut(s) 181
AclI AACGTT 1 cut(s) 62
AclWI GGATC 4 cut(s) 572, 585, 651, 659
AcsI RAATTY 4 cut(s) 11, 308, 344, 1119
AfaI GTAC 2 cut(s) 145, 296
AfiI CCNNNNNNNGG 3 cut(s) 705, 980, 1043
AgsI TTSAA 4 cut(s) 481, 524, 727, 1217
AjnI CCWGG 2 cut(s) 199, 323
AleI CACNNNNGTG 2 cut(s) 80, 651
AloI GAACNNNNNNTCC 2 cut(s) 242, 274
AluBI AGCT 7 cut(s) 120, 304, 527, 683, 816, 892, 1244
AluI AGCT 7 cut(s) 120, 304, 527, 683, 816, 892, 1244
Alw26I GTCTC 1 cut(s) 1088
AlwI GGATC 4 cut(s) 572, 585, 651, 659
AlwNI CAGNNNCTG 1 cut(s) 1244
AoxI GGCC 2 cut(s) 490, 995
ApeKI GCWGC 2 cut(s) 771, 1244
ApoI RAATTY 4 cut(s) 11, 308, 344, 1119
AspS9I GGNCC 4 cut(s) 491, 822, 942, 971
AsuHPI GGTGA 3 cut(s) 746, 922, 1031
AvaII GGWCC 3 cut(s) 822, 942, 971
AxyI CCTNAGG 1 cut(s) 18
BamHI GGATCC 1 cut(s) 577
BanI GGYRCC 3 cut(s) 170, 796, 1033
BbsI GAAGAC 1 cut(s) 1225
BbvI GCAGC 2 cut(s) 783, 1231
BccI CCATC 1 cut(s) 973
BceAI ACGGC 1 cut(s) 705
BciT130I CCWGG 2 cut(s) 201, 325
BclI TGATCA 2 cut(s) 66, 565
BcoDI GTCTC 1 cut(s) 1088
BfmI CTRYAG 1 cut(s) 991
BisI GCNGC 2 cut(s) 772, 1245
BlsI GCNGC 2 cut(s) 773, 1246
BmcAI AGTACT 1 cut(s) 296
Bme1390I CCNGG 2 cut(s) 201, 325
Bme18I GGWCC 3 cut(s) 822, 942, 971
BmgT120I GGNCC 4 cut(s) 491, 822, 942, 971
BmiI GGNNCC 5 cut(s) 172, 579, 697, 798, 1035
BmrFI CCNGG 2 cut(s) 201, 325
BmrI ACTGGG 1 cut(s) 74
BmsI GCATC 1 cut(s) 62
BmuI ACTGGG 1 cut(s) 74
BpiI GAAGAC 1 cut(s) 1225
BplI GAGNNNNNCTC 2 cut(s) 616, 648
BpmI CTGGAG 1 cut(s) 222
Bpu10I CCTNAGC 1 cut(s) 462
BsaAI YACGTR 1 cut(s) 649
BsaJI CCNNGG 4 cut(s) 92, 245, 323, 324
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 3 cut(s) 705, 980, 1043
Bse1I ACTGG 4 cut(s) 80, 163, 381, 1066
Bse21I CCTNAGG 1 cut(s) 18
Bse3DI GCAATG 1 cut(s) 852
BseBI CCWGG 2 cut(s) 201, 325
BseDI CCNNGG 4 cut(s) 92, 245, 323, 324
BseGI GGATG 1 cut(s) 1060
BseLI CCNNNNNNNGG 3 cut(s) 705, 980, 1043
BseMI GCAATG 1 cut(s) 852
BseMII CTCAG 2 cut(s) 9, 1251
BseNI ACTGG 4 cut(s) 80, 163, 381, 1066
BseRI GAGGAG 2 cut(s) 266, 996
BseXI GCAGC 2 cut(s) 783, 1231
BseYI CCCAGC 1 cut(s) 116
BshFI GGCC 2 cut(s) 492, 997
BshNI GGYRCC 3 cut(s) 170, 796, 1033
BslI CCNNNNNNNGG 3 cut(s) 705, 980, 1043
BsmAI GTCTC 1 cut(s) 1088
BsnI GGCC 2 cut(s) 492, 997
Bsp143I GATC 5 cut(s) 66, 565, 577, 643, 664
Bsp19I CCATGG 1 cut(s) 92
BspACI CCGC 1 cut(s) 181
BspANI GGCC 2 cut(s) 492, 997
BspCNI CTCAG 2 cut(s) 10, 1250
BspLI GGNNCC 5 cut(s) 172, 579, 697, 798, 1035
BspPI GGATC 4 cut(s) 572, 585, 651, 659
BspT107I GGYRCC 3 cut(s) 170, 796, 1033
BsrDI GCAATG 1 cut(s) 852
BsrI ACTGG 4 cut(s) 80, 163, 381, 1066
BssECI CCNNGG 4 cut(s) 92, 245, 323, 324
BssMI GATC 5 cut(s) 66, 565, 577, 643, 664
BssT1I CCWWGG 2 cut(s) 92, 245
Bst2UI CCWGG 2 cut(s) 201, 325
Bst4CI ACNGT 2 cut(s) 143, 194
Bst6I CTCTTC 1 cut(s) 927
BstBAI YACGTR 1 cut(s) 649
BstC8I GCNNGC 4 cut(s) 89, 302, 1067, 1100
BstDEI CTNAG 4 cut(s) 18, 462, 959, 1237
BstDSI CCRYGG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 1060
BstKTI GATC 5 cut(s) 69, 568, 580, 646, 667
BstMAI GTCTC 1 cut(s) 1088
BstMBI GATC 5 cut(s) 66, 565, 577, 643, 664
BstNI CCWGG 2 cut(s) 201, 325
BstNSI RCATGY 1 cut(s) 717
BstSCI CCNGG 2 cut(s) 199, 323
BstSFI CTRYAG 1 cut(s) 991
BstV1I GCAGC 2 cut(s) 783, 1231
BstV2I GAAGAC 1 cut(s) 1225
BstX2I RGATCY 2 cut(s) 577, 664
BstYI RGATCY 2 cut(s) 577, 664
Bsu36I CCTNAGG 1 cut(s) 18
BsuRI GGCC 2 cut(s) 492, 997
BtgI CCRYGG 1 cut(s) 92
BtsCI GGATG 1 cut(s) 1060
BtsIMutI CAGTG 4 cut(s) 87, 190, 456, 561
Cac8I GCNNGC 4 cut(s) 89, 302, 1067, 1100
CaiI CAGNNNCTG 1 cut(s) 1244
Cfr13I GGNCC 4 cut(s) 491, 822, 942, 971
Csp6I GTAC 2 cut(s) 144, 295
CviQI GTAC 2 cut(s) 144, 295
DdeI CTNAG 4 cut(s) 18, 462, 959, 1237
DpnI GATC 5 cut(s) 68, 567, 579, 645, 666
DpnII GATC 5 cut(s) 66, 565, 577, 643, 664
Eam1104I CTCTTC 1 cut(s) 927
EarI CTCTTC 1 cut(s) 927
EciI GGCGGA 1 cut(s) 170
Eco130I CCWWGG 2 cut(s) 92, 245
Eco32I GATATC 1 cut(s) 37
Eco47I GGWCC 3 cut(s) 822, 942, 971
Eco81I CCTNAGG 1 cut(s) 18
EcoRI GAATTC 1 cut(s) 1119
EcoRII CCWGG 2 cut(s) 199, 323
EcoRV GATATC 1 cut(s) 37
EcoT14I CCWWGG 2 cut(s) 92, 245
ErhI CCWWGG 2 cut(s) 92, 245
FauNDI CATATG 1 cut(s) 760
FbaI TGATCA 2 cut(s) 66, 565
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 2 cut(s) 772, 1245
FokI GGATG 1 cut(s) 1067
Fsp4HI GCNGC 2 cut(s) 772, 1245
GluI GCNGC 2 cut(s) 772, 1245
GsaI CCCAGC 1 cut(s) 120
GsuI CTGGAG 1 cut(s) 222
HaeIII GGCC 2 cut(s) 492, 997
HindIII AAGCTT 2 cut(s) 681, 890
HinfI GANTC 5 cut(s) 4, 776, 935, 1111, 1148
HphI GGTGA 3 cut(s) 746, 922, 1031
Hpy166II GTNNAC 4 cut(s) 238, 674, 841, 974
Hpy188I TCNGA 2 cut(s) 71, 554
Hpy188III TCNNGA 4 cut(s) 17, 899, 1085, 1217
Hpy8I GTNNAC 4 cut(s) 238, 674, 841, 974
HpyAV CCTTC 3 cut(s) 427, 487, 1223
HpyCH4III ACNGT 2 cut(s) 143, 194
HpyCH4IV ACGT 3 cut(s) 62, 222, 648
HpyCH4V TGCA 7 cut(s) 75, 87, 268, 300, 337, 429, 1190
HpyF3I CTNAG 4 cut(s) 18, 462, 959, 1237
HpySE526I ACGT 3 cut(s) 62, 222, 648
Ksp22I TGATCA 2 cut(s) 66, 565
Kzo9I GATC 5 cut(s) 66, 565, 577, 643, 664
LmnI GCTCC 2 cut(s) 253, 695
Lsp1109I GCAGC 2 cut(s) 783, 1231
LweI GCATC 1 cut(s) 62
MaeII ACGT 3 cut(s) 62, 222, 648
MaeIII GTNAC 3 cut(s) 451, 529, 658
MalI GATC 5 cut(s) 68, 567, 579, 645, 666
MboI GATC 5 cut(s) 66, 565, 577, 643, 664
MboII GAAGA 5 cut(s) 341, 341, 755, 944, 1225
MfeI CAATTG 1 cut(s) 486
MflI RGATCY 2 cut(s) 577, 664
MluCI AATT 9 cut(s) 11, 308, 315, 344, 486, 947, 1073, 1103, 1119
MlyI GAGTC 1 cut(s) 944
MseI TTAA 3 cut(s) 156, 690, 1107
MslI CAYNNNNRTG 2 cut(s) 80, 651
MspR9I CCNGG 2 cut(s) 201, 325
MunI CAATTG 1 cut(s) 486
MvaI CCWGG 2 cut(s) 201, 325
NcoI CCATGG 1 cut(s) 92
NdeI CATATG 1 cut(s) 760
NdeII GATC 5 cut(s) 66, 565, 577, 643, 664
NlaIV GGNNCC 5 cut(s) 172, 579, 697, 798, 1035
NmuCI GTSAC 2 cut(s) 451, 529
NspI RCATGY 1 cut(s) 717
OliI CACNNNNGTG 2 cut(s) 80, 651
PasI CCCWGGG 1 cut(s) 324
PfeI GAWTC 4 cut(s) 4, 776, 1111, 1148
PflMI CCANNNNNTGG 2 cut(s) 705, 1043
PfoI TCCNGGA 1 cut(s) 199
PkrI GCNGC 2 cut(s) 773, 1246
PleI GAGTC 1 cut(s) 943
PpsI GAGTC 1 cut(s) 943
Ppu21I YACGTR 1 cut(s) 649
Psp1406I AACGTT 1 cut(s) 62
Psp6I CCWGG 2 cut(s) 199, 323
PspFI CCCAGC 1 cut(s) 116
PspGI CCWGG 2 cut(s) 199, 323
PspN4I GGNNCC 5 cut(s) 172, 579, 697, 798, 1035
PspPI GGNCC 4 cut(s) 491, 822, 942, 971
PstNI CAGNNNCTG 1 cut(s) 1244
PsuI RGATCY 2 cut(s) 577, 664
RsaI GTAC 2 cut(s) 145, 296
RsaNI GTAC 2 cut(s) 144, 295
RseI CAYNNNNRTG 2 cut(s) 80, 651
SaqAI TTAA 3 cut(s) 156, 690, 1107
SatI GCNGC 2 cut(s) 772, 1245
Sau3AI GATC 5 cut(s) 66, 565, 577, 643, 664
Sau96I GGNCC 4 cut(s) 491, 822, 942, 971
ScaI AGTACT 1 cut(s) 296
SchI GAGTC 1 cut(s) 944
ScrFI CCNGG 2 cut(s) 201, 325
SfaNI GCATC 1 cut(s) 62
SfcI CTRYAG 1 cut(s) 991
SinI GGWCC 3 cut(s) 822, 942, 971
SmiMI CAYNNNNRTG 2 cut(s) 80, 651
Sse9I AATT 9 cut(s) 11, 308, 315, 344, 486, 947, 1073, 1103, 1119
SsiI CCGC 1 cut(s) 181
SspI AATATT 1 cut(s) 229
StyD4I CCNGG 2 cut(s) 199, 323
StyI CCWWGG 2 cut(s) 92, 245
TaaI ACNGT 2 cut(s) 143, 194
TaiI ACGT 3 cut(s) 65, 225, 651
TaqI TCGA 2 cut(s) 1086, 1194
TasI AATT 9 cut(s) 11, 308, 315, 344, 486, 947, 1073, 1103, 1119
TatI WGTACW 1 cut(s) 294
TfiI GAWTC 4 cut(s) 4, 776, 1111, 1148
Tru1I TTAA 3 cut(s) 156, 690, 1107
Tru9I TTAA 3 cut(s) 156, 690, 1107
TscAI CASTG 4 cut(s) 87, 197, 456, 568
TseFI GTSAC 2 cut(s) 451, 529
TseI GCWGC 2 cut(s) 771, 1244
Tsp45I GTSAC 2 cut(s) 451, 529
TspDTI ATGAA 9 cut(s) 112, 409, 692, 739, 756, 768, 929, 1086, 1112
TspGWI ACGGA 1 cut(s) 800
TspRI CASTG 4 cut(s) 87, 197, 456, 568
Van91I CCANNNNNTGG 2 cut(s) 705, 1043
VpaK11BI GGWCC 3 cut(s) 822, 942, 971
XapI RAATTY 4 cut(s) 11, 308, 344, 1119
XceI RCATGY 1 cut(s) 717
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 237
ZrmI AGTACT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.