RLG00000025795

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000068
Physical Location & Seq
Forward (+)
48327687 .. 48328040
354 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025795

Sequence Viewer

Length: 354 bp
ATGTCCTCCAAATCATTTGGAGAGATTGCAATGCCTGAAGTTCTGAGGAAAGATTTGCACGATCGCTATACGTCAAGATACAGTGAGTCACTTGCCTTCTTGTTTGAGGATTTCGATAGTTACAATTGTGTTCACTTGTGGGTGATGAAGGAATATGGTGTGACAGAATCGTGGACTAAGCTAACAGCGGTAGGGGTGCATTTGGAACTTTTTGTCAAGCCATATTGTTTTCGAAAGAATGGTGAACTATTGTTCAAGGTTTCACCTTATGGAGGTTGGAGATGCTGGGGCTTTAACTTCGAGCTAGAAATCGTATTAAAAATGATGACTGCGTTTACAACTTTATGGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

118

Amino Acids

13.85

Weight (kDa)

6.28

Isoelectric Point (pI)

34.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 188
AcuI CTGAAG 1 cut(s) 57
AfiI CCNNNNNNNGG 1 cut(s) 272
AgsI TTSAA 1 cut(s) 256
AluBI AGCT 2 cut(s) 181, 304
AluI AGCT 2 cut(s) 181, 304
AsuHPI GGTGA 3 cut(s) 154, 254, 255
AsuII TTCGAA 1 cut(s) 232
BfaI CTAG 1 cut(s) 305
BmsI GCATC 1 cut(s) 272
Bpu14I TTCGAA 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse3DI GCAATG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 35
BseYI CCCAGC 1 cut(s) 285
Bsh1285I CGRYCG 1 cut(s) 64
BsiEI CGRYCG 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 272
Bsp119I TTCGAA 1 cut(s) 232
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 1 cut(s) 188
BspCNI CTCAG 1 cut(s) 36
BspT104I TTCGAA 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 36
BssMI GATC 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 83
BstBI TTCGAA 1 cut(s) 232
BstDEI CTNAG 2 cut(s) 44, 177
BstENI CCTNNNNNAGG 1 cut(s) 270
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstMCI CGRYCG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 88
CviJI RGCY 4 cut(s) 181, 220, 291, 304
CviKI_1 RGCY 4 cut(s) 181, 220, 291, 304
DdeI CTNAG 2 cut(s) 44, 177
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 57
EcoNI CCTNNNNNAGG 1 cut(s) 270
FaiI YATR 6 cut(s) 69, 156, 223, 270, 346, 352
FspBI CTAG 1 cut(s) 305
GsaI CCCAGC 1 cut(s) 289
HinfI GANTC 2 cut(s) 86, 167
HphI GGTGA 3 cut(s) 154, 254, 255
Hpy166II GTNNAC 4 cut(s) 133, 174, 245, 336
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 1 cut(s) 75
Hpy8I GTNNAC 4 cut(s) 133, 174, 245, 336
HpyAV CCTTC 2 cut(s) 106, 142
HpyCH4III ACNGT 1 cut(s) 83
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 3 cut(s) 29, 58, 199
HpyF3I CTNAG 2 cut(s) 44, 177
HpySE526I ACGT 1 cut(s) 71
Kzo9I GATC 1 cut(s) 61
LpnPI CCDG 2 cut(s) 48, 271
LweI GCATC 1 cut(s) 272
MaeI CTAG 1 cut(s) 305
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 3 cut(s) 87, 119, 160
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MfeI CAATTG 1 cut(s) 124
MluCI AATT 1 cut(s) 124
MlyI GAGTC 1 cut(s) 95
MmeI TCCRAC 1 cut(s) 257
MnlI CCTC 4 cut(s) 16, 39, 100, 266
MseI TTAA 2 cut(s) 294, 317
MspA1I CMGCKG 1 cut(s) 188
MunI CAATTG 1 cut(s) 124
NdeII GATC 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 87, 160
NspV TTCGAA 1 cut(s) 232
PfeI GAWTC 1 cut(s) 167
Ple19I CGATCG 1 cut(s) 64
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PspFI CCCAGC 1 cut(s) 285
PvuI CGATCG 1 cut(s) 64
SaqAI TTAA 2 cut(s) 294, 317
Sau3AI GATC 1 cut(s) 61
SchI GAGTC 1 cut(s) 95
SetI ASST 6 cut(s) 74, 183, 261, 268, 277, 306
SfaNI GCATC 1 cut(s) 272
SfuI TTCGAA 1 cut(s) 232
Sse9I AATT 1 cut(s) 124
SsiI CCGC 1 cut(s) 188
SspMI CTAG 1 cut(s) 305
TaaI ACNGT 1 cut(s) 83
TaiI ACGT 1 cut(s) 74
TaqI TCGA 3 cut(s) 114, 232, 300
TasI AATT 1 cut(s) 124
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 2 cut(s) 294, 317
Tru9I TTAA 2 cut(s) 294, 317
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 2 cut(s) 87, 160
Tsp45I GTSAC 2 cut(s) 87, 160
TspDTI ATGAA 1 cut(s) 161
TspRI CASTG 1 cut(s) 88
XagI CCTNNNNNAGG 1 cut(s) 270
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.