RLG00000021159

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000068
Physical Location & Seq
Forward (+)
72450818 .. 72451321
504 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021159

Sequence Viewer

Length: 504 bp
ATGGAGATTAGTGGTGCTTTGCATTGGATTTGTGGGAAACTGTATACTGAGATCAATGAAAACACGGTCATTGTGACCTTTAACTTGTCTAGTGAATTATTTGGGAAGATGAAGATTCCTGAAGCTTTGAAAAAAGATTCAACGAAGAAATCTTGTTATAAGCTGAGGTACAGAGAATCATTTGCTTTGTTGTCTCAGAGATCTCGGACTGAAAACTACTTAACTGATCTGTGGGTGATGAAAGAAAATGGGGTGGCAGAATCGTGGACTAAACCACTAACTATACACATACCGGATAGTTTGGGACACCTGAGAATTTATTTTAGAAACAGTGGCCAAGTAGTGATTGGAACATTTTGGCAAGGAGTGCAATCACTGGACCCCAAGAGCAAGCAAGTTAAGAATATAGTAGATGATACTCATGACAGACTCATAATACCCATCATGCGTCCTTTCTTCGAGAGCCTTGTTTTACTTGACCGATCTGATGCTTTTTCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

168

Amino Acids

19.34

Weight (kDa)

8.83

Isoelectric Point (pI)

37.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 3 - 112 1.8e-08 F-box associated beta propeller domain
FBA_3 PF08268 16 - 99 6.8e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 159
AccI GTMKAC 1 cut(s) 44
AcoI YGGCCR 1 cut(s) 334
AcsI RAATTY 1 cut(s) 315
AcuI CTGAAG 1 cut(s) 141
AfaI GTAC 1 cut(s) 170
AgsI TTSAA 2 cut(s) 130, 141
AluBI AGCT 2 cut(s) 125, 163
AluI AGCT 2 cut(s) 125, 163
Alw26I GTCTC 1 cut(s) 198
AoxI GGCC 1 cut(s) 334
ApoI RAATTY 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 379
AsuHPI GGTGA 1 cut(s) 247
AvaII GGWCC 1 cut(s) 379
BalI TGGCCA 1 cut(s) 336
BbvCI CCTCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 449
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 1 cut(s) 90
BglII AGATCT 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 379
BmgT120I GGNCC 1 cut(s) 379
BmiI GGNNCC 1 cut(s) 381
BmsI GCATC 1 cut(s) 478
Bpu10I CCTNAGC 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 381
BseMII CTCAG 4 cut(s) 39, 155, 209, 302
BseNI ACTGG 1 cut(s) 381
BshFI GGCC 1 cut(s) 336
BsiSI CCGG 1 cut(s) 293
BslFI GGGAC 1 cut(s) 318
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 1 cut(s) 336
Bsp143I GATC 4 cut(s) 51, 200, 226, 482
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 4 cut(s) 40, 156, 208, 303
BspHI TCATGA 1 cut(s) 421
BspLI GGNNCC 1 cut(s) 381
BsrI ACTGG 1 cut(s) 381
BssMI GATC 4 cut(s) 51, 200, 226, 482
BssNAI GTATAC 1 cut(s) 45
Bst1107I GTATAC 1 cut(s) 45
Bst4CI ACNGT 3 cut(s) 42, 67, 332
BstAPI GCANNNNNTGC 1 cut(s) 367
BstC8I GCNNGC 1 cut(s) 392
BstDEI CTNAG 4 cut(s) 48, 164, 195, 311
BstKTI GATC 4 cut(s) 54, 203, 229, 485
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 4 cut(s) 51, 200, 226, 482
BstMWI GCNNNNNNNGC 1 cut(s) 367
BstX2I RGATCY 1 cut(s) 200
BstYI RGATCY 1 cut(s) 200
BstZ17I GTATAC 1 cut(s) 45
BsuRI GGCC 1 cut(s) 336
BtsIMutI CAGTG 2 cut(s) 337, 374
Cac8I GCNNGC 1 cut(s) 392
CciI TCATGA 1 cut(s) 421
Cfr13I GGNCC 1 cut(s) 379
CseI GACGC 1 cut(s) 437
Csp6I GTAC 1 cut(s) 169
CviAII CATG 2 cut(s) 422, 445
CviJI RGCY 4 cut(s) 125, 163, 336, 465
CviKI_1 RGCY 4 cut(s) 125, 163, 336, 465
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 4 cut(s) 48, 164, 195, 311
DpnI GATC 4 cut(s) 53, 202, 228, 484
DpnII GATC 4 cut(s) 51, 200, 226, 482
EaeI YGGCCR 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 141
FaeI CATG 2 cut(s) 425, 448
FaiI YATR 8 cut(s) 45, 159, 284, 290, 407, 423, 434, 446
FaqI GGGAC 1 cut(s) 318
FatI CATG 2 cut(s) 421, 444
FblI GTMKAC 1 cut(s) 44
FspBI CTAG 1 cut(s) 90
HaeIII GGCC 1 cut(s) 336
HapII CCGG 1 cut(s) 293
HgaI GACGC 1 cut(s) 437
Hin1II CATG 2 cut(s) 425, 448
HindIII AAGCTT 1 cut(s) 123
HinfI GANTC 5 cut(s) 115, 137, 176, 260, 429
HpaII CCGG 1 cut(s) 293
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 2 cut(s) 45, 267
Hpy188I TCNGA 3 cut(s) 198, 207, 487
Hpy188III TCNNGA 3 cut(s) 119, 422, 460
Hpy8I GTNNAC 2 cut(s) 45, 267
HpyCH4III ACNGT 3 cut(s) 42, 67, 332
HpyCH4V TGCA 2 cut(s) 22, 370
HpyF10VI GCNNNNNNNGC 1 cut(s) 367
HpyF3I CTNAG 4 cut(s) 48, 164, 195, 311
Hsp92II CATG 2 cut(s) 425, 448
Kzo9I GATC 4 cut(s) 51, 200, 226, 482
LpnPI CCDG 4 cut(s) 132, 306, 323, 362
LweI GCATC 1 cut(s) 478
MaeI CTAG 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 73
MalI GATC 4 cut(s) 53, 202, 228, 484
MboI GATC 4 cut(s) 51, 200, 226, 482
MboII GAAGA 4 cut(s) 118, 124, 157, 448
MflI RGATCY 1 cut(s) 200
MlsI TGGCCA 1 cut(s) 336
MluCI AATT 2 cut(s) 95, 315
MluNI TGGCCA 1 cut(s) 336
MlyI GAGTC 1 cut(s) 423
MnlI CCTC 1 cut(s) 159
Mox20I TGGCCA 1 cut(s) 336
MscI TGGCCA 1 cut(s) 336
MseI TTAA 3 cut(s) 81, 221, 399
Msp20I TGGCCA 1 cut(s) 336
MspI CCGG 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 367
NdeII GATC 4 cut(s) 51, 200, 226, 482
NlaIII CATG 2 cut(s) 425, 448
NlaIV GGNNCC 1 cut(s) 381
NmuCI GTSAC 1 cut(s) 73
PagI TCATGA 1 cut(s) 421
PfeI GAWTC 4 cut(s) 115, 137, 176, 260
PleI GAGTC 1 cut(s) 423
PpsI GAGTC 1 cut(s) 423
PsiI TTATAA 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 381
PspPI GGNCC 1 cut(s) 379
PsuI RGATCY 1 cut(s) 200
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 3 cut(s) 81, 221, 399
Sau3AI GATC 4 cut(s) 51, 200, 226, 482
Sau96I GGNCC 1 cut(s) 379
SchI GAGTC 1 cut(s) 423
SetI ASST 5 cut(s) 80, 127, 165, 170, 312
SfaNI GCATC 1 cut(s) 478
SinI GGWCC 1 cut(s) 379
Sse9I AATT 2 cut(s) 95, 315
SspMI CTAG 1 cut(s) 90
TaaI ACNGT 3 cut(s) 42, 67, 332
TaqI TCGA 1 cut(s) 459
TaqII GACCGA 1 cut(s) 495
TasI AATT 2 cut(s) 95, 315
TfiI GAWTC 4 cut(s) 115, 137, 176, 260
Tru1I TTAA 3 cut(s) 81, 221, 399
Tru9I TTAA 3 cut(s) 81, 221, 399
TscAI CASTG 2 cut(s) 337, 381
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 3 cut(s) 72, 125, 254
TspRI CASTG 2 cut(s) 337, 381
VpaK11BI GGWCC 1 cut(s) 379
XapI RAATTY 1 cut(s) 315
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
XmiI GTMKAC 1 cut(s) 44
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.