FvH4_3g18890

F-box kelch-repeat protein At3g23880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000068
Physical Location & Seq
Forward (+)
12133576 .. 12141635
8060 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18890.t3

Sequence Viewer

Length: 2583 bp
ATGTGGGACGATTGCTATGAACGTAAGTCTCTGTTGACCCCTGCATCCGCCTCTAAGCTTTGTCTGTCCATTTCTAATGTCATCACAAACTGGCTCAAATCTCTCCCTCAAGAAATCATACCCAACATCCTAATCAGACTACCCATTAAATCCCTCATCAAATTCACCTCTGTCTCCAAATCCTGGAACGCCACCATCAAAAACCCAACCTTCATCCGCACCCACCTCACCCACAAGCTCAATCTCAATGACCAAAGTGCCCCTCACCTCCTTCTCCTCCACTCTGTTCACAGTGAAGGCCTTTCCTTCCCTCTCGGAGTTCGTCACATTACAGGGTTTAAACAAGACCCTTACTCCTTGCATTTCGATAACAATGATGTCAGTCTCTTCTCCGAGGTTGAGTTTCCAGCTGGTCTTAAGAAGGAAATGATCAACCCCTGTTTTCGTGTTGTGGGTACTTGTGATGGGCTTGTTTTCCTTGCTGATGATTTGGGTCGTTATTGTTACAATTTTGTGTTGTGGAATCCTTGTGTGAGGAAGTATGTGATGCTTCCTAAGCCTAGTGTTAGGTTTTCGACACACGGTGGGTATGAGGTTTGTCTTGGTCTTGGTTATGATGCTCTTGGGAAGGACTATAAGGTTGTGCGACTTACCACGCTTTTGGAGCAACGGAGCGTGTTTGGGGGTAGATGTCAGACTCTAGCTCAGGTTTATTCACTAGCCAACGGATCTTGGGGCCGGCTTCGTTCTGATGTTCCTCCTTGTGGAGTGGTGAACGACTTGGGTCAGACTTTTGTTAATGGGGCAGTTCATTGGCTGGCTGTTCATTTGGAGGGTGATGATGTTAACTATTTTGTTCTGGCATTTGATGTGGGCAGTGAGTCATTTCGGGAGGTAATGTTGCCCAAGACATTCAAAATGGATAGTGCAGTGGAATTGAGGTTGTCTGTTTCAGGAGATAAAAAGTCCATTGGTCTGTTCGTGAGGTGTAAGAGTGAGACCGATTGCTTTCTTGATATCTGGGTGATGAGAGAGTATTGTGTGGAGAAGTCGTGGACCAAATTGATGATTCTCACTCCACAAGGTCCGAAAAGAAGTTTGCCGGAGGCATTGTTATTTAGGAGGAATGGTGAAGTGGTGTTGGTACTTGAAGATAGCCGTGAGTTGGTTTCACTTGAACTTGTCAGCAAACAGTTTAAAAGTCTTGGGATTTCTGGAGGGATTTCCCTACAGGGTTTAAGGCAACGGCGCTCTCCCTCAAGTTCTGAAGGGTCACTCGGTCTGAGTTTCAAAATGTGGGAGGATTGCTATGAAGGTAAGTCTCTGCTCAGCCCTGCATCAATCTCTAGGATTTGTTCATCCATCGCTCATGTCTTCCAAAACTGGCTCGAATCTCTCCCCGAAGAAATCATACCCGACATCCTAGTCAGACTACCCATCAAATCCCTCATCAGATTCACCTCTGTCTCTAAATCCTGGAACTCCACCATCAAACACCCAACATTCATCCGCACCCACCTCACCCACACTCTCAATTCCACTCACCAAAACGCTACCCGCCTCATTCTCATCCACAATGTCTCCAATGAAGGCACTTCCAAGCATAACTATGGACAGGTTCCCCTTTCCGGGTTTAAAGAAGACTCTTACTCTCTGCATTATGACAACACTGCTGTTACCGAGCATTGCAAGATTGAGTTTCCAATTGCTCTTAAGCAAATGATGTTGAATCCGTGTTTTCGCGTTTCGGGTACTTATAATGGACTGGTTTTACTTGCTGAGGATGTATGGCATGATGTTTACAACTATGTTTTGTGGAACCCTAGTATAAGAAAGTATGTGATCCTTCCTAAGCCCACTGTGAGGAAGTCGACACATGGTGAGTATAAGGCTTCTATGGGTCTGGGTTATGATGCTCGTAAGAACGACTATAAGGTTGTGAGAGTGACATTTCTTGTGGATCAACCTGATCATTCCCTCACGGCTTTAGTTCAGTACTATTCGCTAGCCACTGGCTCTTGGGGAATGCTTCGGGTTCTTCCTCCATGTATGCTGCTTAGCTCCGGGGTCCTTGTTTTCGCCAATGGGGCACTGCATTTTTTGGCTGTCCGTGGGACCGATAATCATGAAATGAAGTGCTTGCTTATGGGATTTGATGTTGGAAGTGAGTCACTACGAGAAATACTGCTGCCCGAGAGCCTCAACATGGATGCCTTATTGGAGTTCAAATTGGGTGCTTCAGGAGATGGAAAATCCATTGGTCTGTTTGTGAGGTGTGACACTGAGACTGATAGCTATCTTGATATATGGGTGATGAAGGAGTATTTTGTTCAGAAGTCGTGGGCCAAATTGATGATTCTCACTCCACAAGGTCCGGAAAGAAGTTTGCCCAAGCCAATTTGTTTTAGGAGGAGTGGTCATGAAGTGGTGTTGCAACTTGAAGATGACCGTGGATTGGTTTCACTTGACATTGTGAGCAAACAGTTCAAAAGTCTCGGGATTTCTGCAGGTCTGGTTTGTTCTGTTGACTCTTATGAAGAGAGCCTTGTCTTGCTTGACAGGAAGGATGCAATTTCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

861

Amino Acids

96.73

Weight (kDa)

8.21

Isoelectric Point (pI)

35.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 33 - 72 6.7e-08 F-box domain
FBA_1 PF07734 145 - 387 5.2e-24 F-box associated beta propeller domain
FBA_3 PF08268 147 - 385 2.4e-17 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 150 - 467 5.1e-08 F-box protein At3g26010-like, beta-propeller
F-box PF00646 463 - 503 1.8e-08 F-box domain
F-box-like PF12937 463 - 502 1.9e-06 F-box-like
FBA_3 PF08268 560 - 790 2.1e-17 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 584 - 782 1.3e-07 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 586 - 850 3.3e-18 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1758
AasI GACNNNNNNGTC 1 cut(s) 1424
Acc36I ACCTGC 1 cut(s) 2498
AccB7I CCANNNNNTGG 1 cut(s) 183
AccI GTMKAC 1 cut(s) 1871
AccII CGCG 1 cut(s) 1743
AccIII TCCGGA 1 cut(s) 2374
AciI CCGC 4 cut(s) 48, 217, 1510, 1558
AclWI GGATC 3 cut(s) 736, 1837, 1968
AcsI RAATTY 1 cut(s) 161
AcuI CTGAAG 2 cut(s) 1287, 2223
AdeI CACNNNGTG 2 cut(s) 584, 1880
AfaI GTAC 4 cut(s) 457, 1146, 1753, 1997
AfiI CCNNNNNNNGG 8 cut(s) 183, 764, 1165, 1628, 1629, 1863, 2206, 2455
AflII CTTAAG 2 cut(s) 416, 1712
AgsI TTSAA 8 cut(s) 916, 1151, 1178, 1291, 1729, 2227, 2441, 2488
AjnI CCWGG 2 cut(s) 182, 1475
AluBI AGCT 6 cut(s) 58, 238, 410, 704, 2061, 2295
AluI AGCT 6 cut(s) 58, 238, 410, 704, 2061, 2295
Alw26I GTCTC 9 cut(s) 33, 178, 389, 992, 1326, 1471, 1585, 2279, 2498
AlwI GGATC 3 cut(s) 736, 1837, 1968
Ama87I CYCGRG 2 cut(s) 2192, 2495
Aor13HI TCCGGA 1 cut(s) 2374
AoxI GGCC 3 cut(s) 298, 736, 2343
ApeKI GCWGC 2 cut(s) 2053, 2188
ApoI RAATTY 1 cut(s) 161
AspLEI GCGC 1 cut(s) 1251
AspS9I GGNCC 7 cut(s) 736, 1056, 1085, 2068, 2115, 2343, 2372
AsuC2I CCSGG 2 cut(s) 1630, 2065
AsuNHI GCTAGC 1 cut(s) 2005
AvaI CYCGRG 2 cut(s) 2192, 2495
AvaII GGWCC 5 cut(s) 1056, 1085, 2068, 2115, 2372
BaeGI GKGCMC 2 cut(s) 262, 2092
BarI GAAGNNNNNNTAC 2 cut(s) 1395, 1427
BbsI GAAGAC 2 cut(s) 1366, 1647
BbvCI CCTCAGC 1 cut(s) 1779
BbvI GCAGC 2 cut(s) 2040, 2175
BccI CCATC 6 cut(s) 203, 458, 1370, 1445, 1496, 2240
BceAI ACGGC 3 cut(s) 1143, 1262, 1998
BciT130I CCWGG 2 cut(s) 184, 1477
BclI TGATCA 2 cut(s) 429, 1969
BcnI CCSGG 2 cut(s) 1630, 2065
BcoDI GTCTC 9 cut(s) 33, 178, 389, 992, 1326, 1471, 1585, 2279, 2498
BfaI CTAG 7 cut(s) 561, 701, 719, 1347, 1424, 1824, 2006
BfmI CTRYAG 2 cut(s) 1229, 2505
BfoI RGCGCY 1 cut(s) 1252
BfrI CTTAAG 2 cut(s) 416, 1712
BfuAI ACCTGC 1 cut(s) 2498
BglI GCCNNNNNGGC 1 cut(s) 2087
BisI GCNGC 2 cut(s) 2054, 2189
BlpI GCTNAGC 2 cut(s) 1328, 2057
BlsI GCNGC 2 cut(s) 2055, 2190
BmcAI AGTACT 1 cut(s) 1997
Bme1390I CCNGG 4 cut(s) 184, 1477, 1630, 2065
Bme18I GGWCC 5 cut(s) 1056, 1085, 2068, 2115, 2372
BmeT110I CYCGRG 2 cut(s) 2192, 2495
BmgT120I GGNCC 7 cut(s) 736, 1056, 1085, 2068, 2115, 2343, 2372
BmiI GGNNCC 5 cut(s) 737, 1620, 1820, 2069, 2116
BmrFI CCNGG 4 cut(s) 184, 1477, 1630, 2065
BmsI GCATC 7 cut(s) 53, 537, 607, 1346, 1903, 2200, 2557
BmtI GCTAGC 1 cut(s) 2009
BoxI GACNNNNGTC 1 cut(s) 783
BpiI GAAGAC 2 cut(s) 1366, 1647
BpmI CTGGAG 1 cut(s) 1236
Bpu10I CCTNAGC 4 cut(s) 555, 705, 1779, 1851
Bpu1102I GCTNAGC 2 cut(s) 1328, 2057
BpuEI CTTGAG 2 cut(s) 93, 1243
BpuMI CCSGG 2 cut(s) 1630, 2065
BsaBI GATNNNNATC 1 cut(s) 2295
BsaI GGTCTC 1 cut(s) 992
BsaJI CCNNGG 4 cut(s) 393, 2064, 2110, 2449
BsaWI WCCGGW 1 cut(s) 2374
Bsc4I CCNNNNNNNGG 8 cut(s) 183, 764, 1165, 1628, 1629, 1863, 2206, 2455
Bse118I RCCGGY 1 cut(s) 738
Bse1I ACTGG 4 cut(s) 95, 1388, 1770, 2017
Bse3DI GCAATG 1 cut(s) 1684
Bse8I GATNNNNATC 1 cut(s) 2295
BseAI TCCGGA 1 cut(s) 2374
BseBI CCWGG 2 cut(s) 184, 1477
BseDI CCNNGG 4 cut(s) 393, 2064, 2110, 2449
BseJI GATNNNNATC 1 cut(s) 2295
BseLI CCNNNNNNNGG 8 cut(s) 183, 764, 1165, 1628, 1629, 1863, 2206, 2455
BseMI GCAATG 1 cut(s) 1684
BseMII CTCAG 5 cut(s) 719, 1274, 1342, 1770, 2274
BseNI ACTGG 4 cut(s) 95, 1388, 1770, 2017
BseRI GAGGAG 2 cut(s) 266, 2425
BseSI GKGCMC 2 cut(s) 262, 2092
BseXI GCAGC 2 cut(s) 2040, 2175
BsgI GTGCAG 1 cut(s) 948
Bsh1236I CGCG 1 cut(s) 1743
BshFI GGCC 3 cut(s) 300, 738, 2345
BsiHKCI CYCGRG 2 cut(s) 2192, 2495
BsiSI CCGG 5 cut(s) 739, 1103, 1629, 2064, 2375
BslFI GGGAC 2 cut(s) 20, 2128
BslI CCNNNNNNNGG 8 cut(s) 183, 764, 1165, 1628, 1629, 1863, 2206, 2455
BsmAI GTCTC 9 cut(s) 33, 178, 389, 992, 1326, 1471, 1585, 2279, 2498
BsmFI GGGAC 2 cut(s) 20, 2128
BsmI GAATGC 1 cut(s) 2031
BsnI GGCC 3 cut(s) 300, 738, 2345
Bso31I GGTCTC 1 cut(s) 992
BsoBI CYCGRG 2 cut(s) 2192, 2495
Bsp1286I GDGCHC 2 cut(s) 262, 2092
Bsp13I TCCGGA 1 cut(s) 2374
Bsp143I GATC 5 cut(s) 429, 728, 1842, 1960, 1969
Bsp1720I GCTNAGC 2 cut(s) 1328, 2057
BspACI CCGC 4 cut(s) 48, 217, 1510, 1558
BspANI GGCC 3 cut(s) 300, 738, 2345
BspCNI CTCAG 5 cut(s) 718, 1275, 1341, 1771, 2275
BspEI TCCGGA 1 cut(s) 2374
BspFNI CGCG 1 cut(s) 1743
BspHI TCATGA 2 cut(s) 2125, 2419
BspLI GGNNCC 5 cut(s) 737, 1620, 1820, 2069, 2116
BspMAI CTGCAG 1 cut(s) 2509
BspMI ACCTGC 1 cut(s) 2498
BspOI GCTAGC 1 cut(s) 2009
BspPI GGATC 3 cut(s) 736, 1837, 1968
BspTI CTTAAG 2 cut(s) 416, 1712
BspTNI GGTCTC 1 cut(s) 992
BsrDI GCAATG 1 cut(s) 1684
BsrFI RCCGGY 1 cut(s) 738
BsrI ACTGG 4 cut(s) 95, 1388, 1770, 2017
BssAI RCCGGY 1 cut(s) 738
BssECI CCNNGG 4 cut(s) 393, 2064, 2110, 2449
BssMI GATC 5 cut(s) 429, 728, 1842, 1960, 1969
Bst2UI CCWGG 2 cut(s) 184, 1477
Bst4CI ACNGT 6 cut(s) 293, 584, 1194, 1861, 2450, 2484
Bst6I CTCTTC 2 cut(s) 392, 2532
BstAFI CTTAAG 2 cut(s) 416, 1712
BstC8I GCNNGC 4 cut(s) 740, 819, 2007, 2141
BstDEI CTNAG 9 cut(s) 54, 555, 705, 1283, 1328, 1779, 1851, 2057, 2283
BstDSI CCRYGG 2 cut(s) 2110, 2449
BstFNI CGCG 1 cut(s) 1743
BstH2I RGCGCY 1 cut(s) 1252
BstHHI GCGC 1 cut(s) 1251
BstKTI GATC 5 cut(s) 432, 731, 1845, 1963, 1972
BstMAI GTCTC 9 cut(s) 33, 178, 389, 992, 1326, 1471, 1585, 2279, 2498
BstMBI GATC 5 cut(s) 429, 728, 1842, 1960, 1969
BstMWI GCNNNNNNNGC 3 cut(s) 556, 664, 2087
BstNI CCWGG 2 cut(s) 184, 1477
BstPAI GACNNNNGTC 1 cut(s) 783
BstSCI CCNGG 4 cut(s) 182, 1475, 1628, 2063
BstSFI CTRYAG 2 cut(s) 1229, 2505
BstSLI GKGCMC 2 cut(s) 262, 2092
BstUI CGCG 1 cut(s) 1743
BstV1I GCAGC 2 cut(s) 2040, 2175
BstV2I GAAGAC 2 cut(s) 1366, 1647
BstX2I RGATCY 1 cut(s) 728
BstXI CCANNNNNNTGG 1 cut(s) 661
BstYI RGATCY 1 cut(s) 728
BsuRI GGCC 3 cut(s) 300, 738, 2345
BtgI CCRYGG 2 cut(s) 2110, 2449
BtgZI GCGATG 1 cut(s) 1348
BtsI GCAGTG 4 cut(s) 883, 936, 1668, 2090
BtsIMutI CAGTG 8 cut(s) 298, 883, 936, 1668, 1857, 2010, 2090, 2280
BveI ACCTGC 1 cut(s) 2498
Cac8I GCNNGC 4 cut(s) 740, 819, 2007, 2141
CciI TCATGA 2 cut(s) 2125, 2419
CfoI GCGC 1 cut(s) 1251
Cfr10I RCCGGY 1 cut(s) 738
Cfr13I GGNCC 7 cut(s) 736, 1056, 1085, 2068, 2115, 2343, 2372
Csp6I GTAC 4 cut(s) 456, 1145, 1752, 1996
CviAII CATG 7 cut(s) 1370, 1793, 1877, 2046, 2126, 2206, 2420
CviQI GTAC 4 cut(s) 456, 1145, 1752, 1996
DdeI CTNAG 9 cut(s) 54, 555, 705, 1283, 1328, 1779, 1851, 2057, 2283
DpnI GATC 5 cut(s) 431, 730, 1844, 1962, 1971
DpnII GATC 5 cut(s) 429, 728, 1842, 1960, 1969
DraI TTTAAA 3 cut(s) 340, 1198, 1636
DraIII CACNNNGTG 2 cut(s) 584, 1880
DrdI GACNNNNNNGTC 1 cut(s) 1424
DseDI GACNNNNNNGTC 1 cut(s) 1424
Eam1104I CTCTTC 2 cut(s) 392, 2532
EarI CTCTTC 2 cut(s) 392, 2532
EciI GGCGGA 1 cut(s) 37
Eco147I AGGCCT 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 992
Eco32I GATATC 1 cut(s) 1018
Eco47I GGWCC 5 cut(s) 1056, 1085, 2068, 2115, 2372
Eco57I CTGAAG 2 cut(s) 1287, 2223
Eco88I CYCGRG 2 cut(s) 2192, 2495
EcoO109I RGGNCCY 1 cut(s) 2068
EcoRII CCWGG 2 cut(s) 182, 1475
EcoRV GATATC 1 cut(s) 1018
FaeI CATG 7 cut(s) 1373, 1796, 1880, 2049, 2129, 2209, 2423
FalI AAGNNNNNCTT 2 cut(s) 2529, 2561
FaqI GGGAC 2 cut(s) 20, 2128
FatI CATG 7 cut(s) 1369, 1792, 1876, 2045, 2125, 2205, 2419
FauI CCCGC 1 cut(s) 1565
FbaI TGATCA 2 cut(s) 429, 1969
FblI GTMKAC 1 cut(s) 1871
Fnu4HI GCNGC 2 cut(s) 2054, 2189
Fsp4HI GCNGC 2 cut(s) 2054, 2189
FspBI CTAG 7 cut(s) 561, 701, 719, 1347, 1424, 1824, 2006
GlaI GCGC 1 cut(s) 1250
GluI GCNGC 2 cut(s) 2054, 2189
GsuI CTGGAG 1 cut(s) 1236
HaeII RGCGCY 1 cut(s) 1252
HaeIII GGCC 3 cut(s) 300, 738, 2345
HapII CCGG 5 cut(s) 739, 1103, 1629, 2064, 2375
HhaI GCGC 1 cut(s) 1251
Hin1II CATG 7 cut(s) 1373, 1796, 1880, 2049, 2129, 2209, 2423
Hin6I GCGC 1 cut(s) 1249
HinP1I GCGC 1 cut(s) 1249
HincII GTYRAC 4 cut(s) 36, 847, 1872, 2527
HindII GTYRAC 4 cut(s) 36, 847, 1872, 2527
HindIII AAGCTT 1 cut(s) 56
HpaI GTTAAC 1 cut(s) 847
HpaII CCGG 5 cut(s) 739, 1103, 1629, 2064, 2375
Hpy166II GTNNAC 8 cut(s) 36, 289, 775, 847, 1056, 1801, 1872, 2527
Hpy8I GTNNAC 8 cut(s) 36, 289, 775, 847, 1056, 1801, 1872, 2527
HpyCH4III ACNGT 6 cut(s) 293, 584, 1194, 1861, 2450, 2484
HpyCH4IV ACGT 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 3 cut(s) 556, 664, 2087
HpyF3I CTNAG 9 cut(s) 54, 555, 705, 1283, 1328, 1779, 1851, 2057, 2283
HpySE526I ACGT 1 cut(s) 22
Hsp92II CATG 7 cut(s) 1373, 1796, 1880, 2049, 2129, 2209, 2423
HspAI GCGC 1 cut(s) 1249
Kpn2I TCCGGA 1 cut(s) 2374
KroI GCCGGC 1 cut(s) 738
KroNI GCCGGC 1 cut(s) 740
Ksp22I TGATCA 2 cut(s) 429, 1969
KspAI GTTAAC 1 cut(s) 847
Kzo9I GATC 5 cut(s) 429, 728, 1842, 1960, 1969
LmnI GCTCC 3 cut(s) 664, 672, 2066
Lsp1109I GCAGC 2 cut(s) 2040, 2175
LweI GCATC 7 cut(s) 53, 537, 607, 1346, 1903, 2200, 2557
MaeI CTAG 7 cut(s) 561, 701, 719, 1347, 1424, 1824, 2006
MaeII ACGT 1 cut(s) 22
MaeIII GTNAC 7 cut(s) 323, 503, 1272, 1675, 1945, 2169, 2276
MalI GATC 5 cut(s) 431, 730, 1844, 1962, 1971
MboI GATC 5 cut(s) 429, 728, 1842, 1960, 1969
MboII GAAGA 8 cut(s) 379, 1163, 1366, 1415, 1652, 2030, 2453, 2549
MfeI CAATTG 1 cut(s) 1704
MflI RGATCY 1 cut(s) 728
MhlI GDGCHC 2 cut(s) 262, 2092
MlyI GAGTC 5 cut(s) 691, 890, 1637, 2177, 2522
MmeI TCCRAC 1 cut(s) 2140
MroI TCCGGA 1 cut(s) 2374
MroNI GCCGGC 1 cut(s) 738
MseI TTAA 9 cut(s) 147, 339, 417, 798, 846, 1197, 1238, 1635, 1713
MslI CAYNNNNRTG 1 cut(s) 1608
MspA1I CMGCKG 1 cut(s) 410
MspCI CTTAAG 2 cut(s) 416, 1712
MspI CCGG 5 cut(s) 739, 1103, 1629, 2064, 2375
MspR9I CCNGG 4 cut(s) 184, 1477, 1630, 2065
MssI GTTTAAAC 1 cut(s) 340
MunI CAATTG 1 cut(s) 1704
Mva1269I GAATGC 1 cut(s) 2031
MvaI CCWGG 2 cut(s) 184, 1477
MvnI CGCG 1 cut(s) 1743
MwoI GCNNNNNNNGC 3 cut(s) 556, 664, 2087
NaeI GCCGGC 1 cut(s) 740
NciI CCSGG 2 cut(s) 1630, 2065
NdeII GATC 5 cut(s) 429, 728, 1842, 1960, 1969
NgoMIV GCCGGC 1 cut(s) 738
NheI GCTAGC 1 cut(s) 2005
NlaIII CATG 7 cut(s) 1373, 1796, 1880, 2049, 2129, 2209, 2423
NlaIV GGNNCC 5 cut(s) 737, 1620, 1820, 2069, 2116
NmuCI GTSAC 5 cut(s) 323, 1272, 1945, 2169, 2276
PagI TCATGA 2 cut(s) 2125, 2419
PceI AGGCCT 1 cut(s) 300
PctI GAATGC 1 cut(s) 2031
PdiI GCCGGC 1 cut(s) 740
PfeI GAWTC 6 cut(s) 523, 1069, 1391, 1455, 1729, 2356
PflMI CCANNNNNTGG 1 cut(s) 183
PfoI TCCNGGA 2 cut(s) 182, 1475
PkrI GCNGC 2 cut(s) 2055, 2190
PleI GAGTC 5 cut(s) 691, 889, 1637, 2176, 2522
PmeI GTTTAAAC 1 cut(s) 340
PpsI GAGTC 5 cut(s) 691, 889, 1637, 2176, 2522
PpuMI RGGWCCY 1 cut(s) 2068
PshAI GACNNNNGTC 1 cut(s) 783
PsiI TTATAA 1 cut(s) 1758
Psp5II RGGWCCY 1 cut(s) 2068
Psp6I CCWGG 2 cut(s) 182, 1475
PspGI CCWGG 2 cut(s) 182, 1475
PspN4I GGNNCC 5 cut(s) 737, 1620, 1820, 2069, 2116
PspPI GGNCC 7 cut(s) 736, 1056, 1085, 2068, 2115, 2343, 2372
PspPPI RGGWCCY 1 cut(s) 2068
PstI CTGCAG 1 cut(s) 2509
PsuI RGATCY 1 cut(s) 728
PvuII CAGCTG 1 cut(s) 410
RsaI GTAC 4 cut(s) 457, 1146, 1753, 1997
RsaNI GTAC 4 cut(s) 456, 1145, 1752, 1996
RseI CAYNNNNRTG 1 cut(s) 1608
SalI GTCGAC 1 cut(s) 1870
SaqAI TTAA 9 cut(s) 147, 339, 417, 798, 846, 1197, 1238, 1635, 1713
SatI GCNGC 2 cut(s) 2054, 2189
Sau3AI GATC 5 cut(s) 429, 728, 1842, 1960, 1969
Sau96I GGNCC 7 cut(s) 736, 1056, 1085, 2068, 2115, 2343, 2372
ScaI AGTACT 1 cut(s) 1997
SchI GAGTC 5 cut(s) 691, 890, 1637, 2177, 2522
ScrFI CCNGG 4 cut(s) 184, 1477, 1630, 2065
SduI GDGCHC 2 cut(s) 262, 2092
SfaNI GCATC 7 cut(s) 53, 537, 607, 1346, 1903, 2200, 2557
SfcI CTRYAG 2 cut(s) 1229, 2505
SinI GGWCC 5 cut(s) 1056, 1085, 2068, 2115, 2372
SmiMI CAYNNNNRTG 1 cut(s) 1608
SmlI CTYRAG 4 cut(s) 108, 416, 1258, 1712
SmoI CTYRAG 4 cut(s) 108, 416, 1258, 1712
SseBI AGGCCT 1 cut(s) 300
SsiI CCGC 4 cut(s) 48, 217, 1510, 1558
SspMI CTAG 7 cut(s) 561, 701, 719, 1347, 1424, 1824, 2006
StuI AGGCCT 1 cut(s) 300
StyD4I CCNGG 4 cut(s) 182, 1475, 1628, 2063
TaaI ACNGT 6 cut(s) 293, 584, 1194, 1861, 2450, 2484
TaiI ACGT 1 cut(s) 25
TaqI TCGA 4 cut(s) 366, 575, 1389, 1871
TaqII GACCGA 3 cut(s) 1016, 1268, 2132
TatI WGTACW 1 cut(s) 1995
TfiI GAWTC 6 cut(s) 523, 1069, 1391, 1455, 1729, 2356
Tru1I TTAA 9 cut(s) 147, 339, 417, 798, 846, 1197, 1238, 1635, 1713
Tru9I TTAA 9 cut(s) 147, 339, 417, 798, 846, 1197, 1238, 1635, 1713
TscAI CASTG 8 cut(s) 298, 883, 936, 1675, 1864, 2017, 2097, 2287
TseFI GTSAC 5 cut(s) 323, 1272, 1945, 2169, 2276
TseI GCWGC 2 cut(s) 2053, 2188
Tsp45I GTSAC 5 cut(s) 323, 1272, 1945, 2169, 2276
TspGWI ACGGA 4 cut(s) 685, 741, 1722, 2099
TspRI CASTG 8 cut(s) 298, 883, 936, 1675, 1864, 2017, 2097, 2287
Van91I CCANNNNNTGG 1 cut(s) 183
Vha464I CTTAAG 2 cut(s) 416, 1712
VpaK11BI GGWCC 5 cut(s) 1056, 1085, 2068, 2115, 2372
XapI RAATTY 1 cut(s) 161
XmiI GTMKAC 1 cut(s) 1871
XspI CTAG 7 cut(s) 561, 701, 719, 1347, 1424, 1824, 2006
ZrmI AGTACT 1 cut(s) 1997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.