MD05G1165700.v1.1

F-box and associated interaction domains-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000068
Physical Location & Seq
Reverse (-)
29439701 .. 29440309
609 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1165700.v1.1.491

Sequence Viewer

Length: 609 bp
ATGGTAACGGCATTCCATATAAGGTGCTCGGAACTTGTAACGGGCTCATATGCATTGAATCCAGCGACATCGTCAGGCTCTAACATAGTAATATGGAACCCTTCCATTAGAAAGCTTTTGGTTGTGCCTAAACCCACTATTCCCTTTTCGCGTTATAATCGAACATATTATGCGTTTGGGTATGATTCGCATTCAAATGACTATAAGCTTTTGAGAAGTGTGATGACTGGTCTGACTTCACGTGGAATGGAGATTTGGTCACTAGTCAAGGCTTCTTGGAGAAGCCTTAGTGCTGATATTAGTATTTTTCATCCAAGCGTGTTGCCTCGATTTTCCGTTGTCTTTTCGCCTTGTGGCTGGCCACCTGCTTTGGTCAATGATGCTTTGCATTGGAGTCAGTTACAGAAAAATATGAACCATTTCATCCTGTCATTTGATATGTGCAGTGAATTTTTTGGTGTAATAATACTACCCGAAGTTGTGCAACACAGCAGTCAATTTATTTCAAGATACAAGGTGTATCTTGCCCTTTTTGTGAATGATCTTCAACTAGATTGCAGTACTGTTAGTCTGTGGGTGATGAAAGAGTATGGTGTCCTGGAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

203

Amino Acids

22.97

Weight (kDa)

8.68

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 25 - 196 2.2e-17 F-box associated beta propeller domain
FBA_1 PF07734 25 - 196 3.1e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
AarI CACCTGC 1 cut(s) 373
Acc36I ACCTGC 1 cut(s) 373
AccII CGCG 1 cut(s) 151
AcoI YGGCCR 1 cut(s) 359
AcsI RAATTY 1 cut(s) 449
AcvI CACGTG 1 cut(s) 242
AfaI GTAC 1 cut(s) 562
AgsI TTSAA 4 cut(s) 58, 195, 507, 548
AhlI ACTAGT 1 cut(s) 262
AjnI CCWGG 1 cut(s) 597
AjuI GAANNNNNNNTTGG 2 cut(s) 238, 270
AluBI AGCT 2 cut(s) 115, 208
AluI AGCT 2 cut(s) 115, 208
Alw21I GWGCWC 1 cut(s) 29
AoxI GGCC 1 cut(s) 359
ApoI RAATTY 1 cut(s) 449
Asp700I GAANNNNTTC 1 cut(s) 419
AsuHPI GGTGA 1 cut(s) 589
BalI TGGCCA 1 cut(s) 361
BanII GRGCYC 1 cut(s) 47
BbrPI CACGTG 1 cut(s) 242
Bbv12I GWGCWC 1 cut(s) 29
BceAI ACGGC 1 cut(s) 24
BciT130I CCWGG 1 cut(s) 599
BcuI ACTAGT 1 cut(s) 262
BfaI CTAG 2 cut(s) 263, 551
BfuAI ACCTGC 1 cut(s) 373
BmcAI AGTACT 1 cut(s) 562
Bme1390I CCNGG 1 cut(s) 599
BmiI GGNNCC 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 599
BmsI GCATC 1 cut(s) 370
BsaAI YACGTR 1 cut(s) 242
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bse1I ACTGG 1 cut(s) 232
BseBI CCWGG 1 cut(s) 599
BseGI GGATG 2 cut(s) 310, 423
BseNI ACTGG 1 cut(s) 232
BsgI GTGCAG 1 cut(s) 463
Bsh1236I CGCG 1 cut(s) 151
BshFI GGCC 1 cut(s) 361
BsiHKAI GWGCWC 1 cut(s) 29
BsmI GAATGC 2 cut(s) 11, 190
BsnI GGCC 1 cut(s) 361
Bsp1286I GDGCHC 2 cut(s) 29, 47
Bsp143I GATC 1 cut(s) 541
BspANI GGCC 1 cut(s) 361
BspFNI CGCG 1 cut(s) 151
BspHI TCATGA 1 cut(s) 605
BspLI GGNNCC 1 cut(s) 98
BspMI ACCTGC 1 cut(s) 373
BsrI ACTGG 1 cut(s) 232
BssMI GATC 1 cut(s) 541
Bst2UI CCWGG 1 cut(s) 599
Bst4CI ACNGT 1 cut(s) 565
BstBAI YACGTR 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 359
BstDEI CTNAG 1 cut(s) 287
BstF5I GGATG 2 cut(s) 310, 423
BstFNI CGCG 1 cut(s) 151
BstKTI GATC 1 cut(s) 544
BstMBI GATC 1 cut(s) 541
BstNI CCWGG 1 cut(s) 599
BstSCI CCNGG 1 cut(s) 597
BstUI CGCG 1 cut(s) 151
BsuRI GGCC 1 cut(s) 361
BtsCI GGATG 2 cut(s) 310, 423
BtsI GCAGTG 1 cut(s) 451
BtsIMutI CAGTG 1 cut(s) 451
BveI ACCTGC 1 cut(s) 373
Cac8I GCNNGC 1 cut(s) 359
CciI TCATGA 1 cut(s) 605
Csp6I GTAC 1 cut(s) 561
CspCI CAANNNNNGTGG 2 cut(s) 351, 386
CviAII CATG 1 cut(s) 606
CviJI RGCY 8 cut(s) 45, 78, 115, 208, 272, 285, 357, 361
CviKI_1 RGCY 8 cut(s) 45, 78, 115, 208, 272, 285, 357, 361
CviQI GTAC 1 cut(s) 561
DdeI CTNAG 1 cut(s) 287
DpnI GATC 1 cut(s) 543
DpnII GATC 1 cut(s) 541
EaeI YGGCCR 1 cut(s) 359
Eco24I GRGCYC 1 cut(s) 47
Eco72I CACGTG 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 597
EcoT22I ATGCAT 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 47
FaeI CATG 1 cut(s) 609
FatI CATG 1 cut(s) 605
FauNDI CATATG 1 cut(s) 49
FokI GGATG 2 cut(s) 297, 410
FriOI GRGCYC 1 cut(s) 47
FspBI CTAG 2 cut(s) 263, 551
HaeIII GGCC 1 cut(s) 361
Hin1II CATG 1 cut(s) 609
HindIII AAGCTT 2 cut(s) 113, 206
HinfI GANTC 4 cut(s) 58, 185, 394, 602
HphI GGTGA 1 cut(s) 589
Hpy188I TCNGA 2 cut(s) 31, 234
Hpy188III TCNNGA 2 cut(s) 507, 606
HpyAV CCTTC 1 cut(s) 111
HpyCH4III ACNGT 1 cut(s) 565
HpyCH4IV ACGT 1 cut(s) 241
HpyCH4V TGCA 5 cut(s) 53, 388, 444, 484, 558
HpyF3I CTNAG 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 241
Hsp92II CATG 1 cut(s) 609
Kzo9I GATC 1 cut(s) 541
LpnPI CCDG 7 cut(s) 60, 75, 213, 343, 378, 440, 584
LweI GCATC 1 cut(s) 370
MaeI CTAG 2 cut(s) 263, 551
MaeII ACGT 1 cut(s) 241
MaeIII GTNAC 4 cut(s) 4, 37, 258, 399
MalI GATC 1 cut(s) 543
MboI GATC 1 cut(s) 541
MboII GAAGA 1 cut(s) 536
MhlI GDGCHC 2 cut(s) 29, 47
MlsI TGGCCA 1 cut(s) 361
MluCI AATT 2 cut(s) 449, 497
MluNI TGGCCA 1 cut(s) 361
MlyI GAGTC 1 cut(s) 403
MnlI CCTC 1 cut(s) 336
Mox20I TGGCCA 1 cut(s) 361
Mph1103I ATGCAT 1 cut(s) 55
MroXI GAANNNNTTC 1 cut(s) 419
MscI TGGCCA 1 cut(s) 361
MslI CAYNNNNRTG 1 cut(s) 195
Msp20I TGGCCA 1 cut(s) 361
MspR9I CCNGG 1 cut(s) 599
Mva1269I GAATGC 2 cut(s) 11, 190
MvaI CCWGG 1 cut(s) 599
MvnI CGCG 1 cut(s) 151
NdeI CATATG 1 cut(s) 49
NdeII GATC 1 cut(s) 541
NlaIII CATG 1 cut(s) 609
NlaIV GGNNCC 1 cut(s) 98
NmuCI GTSAC 1 cut(s) 258
NsiI ATGCAT 1 cut(s) 55
PagI TCATGA 1 cut(s) 605
PaqCI CACCTGC 1 cut(s) 373
PctI GAATGC 2 cut(s) 11, 190
PdmI GAANNNNTTC 1 cut(s) 419
PfeI GAWTC 3 cut(s) 58, 185, 602
PflFI GACNNNGTC 1 cut(s) 70
PfoI TCCNGGA 1 cut(s) 597
PleI GAGTC 1 cut(s) 402
PmaCI CACGTG 1 cut(s) 242
PmlI CACGTG 1 cut(s) 242
PpsI GAGTC 1 cut(s) 402
Ppu21I YACGTR 1 cut(s) 242
PsiI TTATAA 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 597
PspCI CACGTG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 597
PspN4I GGNNCC 1 cut(s) 98
PsyI GACNNNGTC 1 cut(s) 70
RsaI GTAC 1 cut(s) 562
RsaNI GTAC 1 cut(s) 561
RseI CAYNNNNRTG 1 cut(s) 195
Sau3AI GATC 1 cut(s) 541
ScaI AGTACT 1 cut(s) 562
SchI GAGTC 1 cut(s) 403
ScrFI CCNGG 1 cut(s) 599
SduI GDGCHC 2 cut(s) 29, 47
SetI ASST 6 cut(s) 26, 117, 210, 244, 367, 519
SfaNI GCATC 1 cut(s) 370
SmiMI CAYNNNNRTG 1 cut(s) 195
SpeI ACTAGT 1 cut(s) 262
Sse9I AATT 2 cut(s) 449, 497
SspMI CTAG 2 cut(s) 263, 551
StyD4I CCNGG 1 cut(s) 597
TaaI ACNGT 1 cut(s) 565
TaiI ACGT 1 cut(s) 244
TaqI TCGA 2 cut(s) 160, 328
TasI AATT 2 cut(s) 449, 497
TatI WGTACW 1 cut(s) 560
TfiI GAWTC 3 cut(s) 58, 185, 602
TscAI CASTG 1 cut(s) 451
TseFI GTSAC 1 cut(s) 258
Tsp45I GTSAC 1 cut(s) 258
TspDTI ATGAA 4 cut(s) 299, 412, 428, 596
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 1 cut(s) 451
Tth111I GACNNNGTC 1 cut(s) 70
XapI RAATTY 1 cut(s) 449
XmnI GAANNNNTTC 1 cut(s) 419
XspI CTAG 2 cut(s) 263, 551
ZrmI AGTACT 1 cut(s) 562
Zsp2I ATGCAT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.