Rorug05G0438300

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000068
Physical Location & Seq
Forward (+)
60975426 .. 60975950
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0438300.1

Sequence Viewer

Length: 525 bp
ATGCTTCCAGATGTCTCGTGTCCCTACTGTGCCAATGGTAGAGAAGATACTATACATATTTTTAAGAACTGTGGAGCTGTTAGCATGTTTTGGCATTTTGGGCCATTGAAGTTGATTCCTGAAGTGCACCCTCCTAATTCAGTCGTTGATTGGATCAATGAAATATTCGATCAGCTTCATGGTGAGCATCTTGAGCTGTTTGTCATGTCTTTGTGGGTTGTGTGGTGTGAAAGAAATAATCTAATTTGGAAGGGTGGTTGCTTTATCCCCGTGACCATGACAAAGTGGGTTAGTGCTTTCTTTGAGGAGTATAAGCAGTATCATGCACGCACTTACATGAAGGCTAAACACCCCATCACAAAATGGAAGTCTCCACCGAGTGGTAGACTGAAAGTGAATATTGATGGCAGCTTTCGAGCAGTAGTGGTGGCATTGGAGTTATTGTCCGAAATGAACAAGGAGTTTGCATGGCTGCATTGGCTAGGCCTTTTCCTGTCATTCAATCTTCCATTCAAGCTGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

174

Amino Acids

20.38

Weight (kDa)

8.28

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 380
AccI GTMKAC 1 cut(s) 385
AclWI GGATC 1 cut(s) 161
AcuI CTGAAG 1 cut(s) 141
AdeI CACNNNGTG 1 cut(s) 380
AfiI CCNNNNNNNGG 1 cut(s) 380
AgsI TTSAA 3 cut(s) 109, 502, 514
AluBI AGCT 5 cut(s) 77, 175, 196, 411, 517
AluI AGCT 5 cut(s) 77, 175, 196, 411, 517
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 2 cut(s) 19, 375
Alw44I GTGCAC 1 cut(s) 125
AlwI GGATC 1 cut(s) 161
AoxI GGCC 2 cut(s) 101, 484
ApaLI GTGCAC 1 cut(s) 125
ApeKI GCWGC 2 cut(s) 408, 472
ArsI GACNNNNNNTTYG 2 cut(s) 353, 385
AspS9I GGNCC 1 cut(s) 101
AsuHPI GGTGA 1 cut(s) 194
BaeGI GKGCMC 1 cut(s) 129
BarI GAAGNNNNNNTAC 2 cut(s) 36, 68
BauI CACGAG 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 129
BbvCI CCTCAGC 1 cut(s) 518
BbvI GCAGC 2 cut(s) 420, 459
BccI CCATC 2 cut(s) 362, 398
BcoDI GTCTC 2 cut(s) 19, 375
BfaI CTAG 1 cut(s) 482
BisI GCNGC 2 cut(s) 409, 473
BlsI GCNGC 2 cut(s) 410, 474
BmgT120I GGNCC 1 cut(s) 101
BmsI GCATC 1 cut(s) 196
Bpu10I CCTNAGC 1 cut(s) 518
BpuEI CTTGAG 1 cut(s) 212
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bsc4I CCNNNNNNNGG 1 cut(s) 380
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMII CTCAG 1 cut(s) 509
BseRI GAGGAG 1 cut(s) 320
BseSI GKGCMC 1 cut(s) 129
BseXI GCAGC 2 cut(s) 420, 459
BshFI GGCC 2 cut(s) 103, 486
BsiHKAI GWGCWC 1 cut(s) 129
BslFI GGGAC 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 380
BsmAI GTCTC 2 cut(s) 19, 375
BsmFI GGGAC 1 cut(s) 6
BsnI GGCC 2 cut(s) 103, 486
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 153, 169
BspANI GGCC 2 cut(s) 103, 486
BspCNI CTCAG 1 cut(s) 510
BspPI GGATC 1 cut(s) 161
BssMI GATC 2 cut(s) 153, 169
BssSI CACGAG 1 cut(s) 16
Bst2BI CACGAG 1 cut(s) 16
Bst4CI ACNGT 2 cut(s) 29, 71
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 1 cut(s) 518
BstKTI GATC 2 cut(s) 156, 172
BstMAI GTCTC 2 cut(s) 19, 375
BstMBI GATC 2 cut(s) 153, 169
BstMWI GCNNNNNNNGC 3 cut(s) 100, 193, 478
BstNSI RCATGY 1 cut(s) 88
BstSLI GKGCMC 1 cut(s) 129
BstV1I GCAGC 2 cut(s) 420, 459
BsuRI GGCC 2 cut(s) 103, 486
Cac8I GCNNGC 1 cut(s) 328
Cfr13I GGNCC 1 cut(s) 101
CviAII CATG 7 cut(s) 85, 179, 205, 277, 323, 337, 468
DdeI CTNAG 1 cut(s) 518
DpnI GATC 2 cut(s) 155, 171
DpnII GATC 2 cut(s) 153, 169
DraIII CACNNNGTG 1 cut(s) 380
Eco147I AGGCCT 1 cut(s) 486
Eco57I CTGAAG 1 cut(s) 141
FaeI CATG 7 cut(s) 88, 182, 208, 280, 326, 340, 471
FaqI GGGAC 1 cut(s) 6
FatI CATG 7 cut(s) 84, 178, 204, 276, 322, 336, 467
FblI GTMKAC 1 cut(s) 385
Fnu4HI GCNGC 2 cut(s) 409, 473
Fsp4HI GCNGC 2 cut(s) 409, 473
FspBI CTAG 1 cut(s) 482
GluI GCNGC 2 cut(s) 409, 473
HaeIII GGCC 2 cut(s) 103, 486
Hin1II CATG 7 cut(s) 88, 182, 208, 280, 326, 340, 471
HinfI GANTC 1 cut(s) 115
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 2 cut(s) 127, 386
Hpy188I TCNGA 1 cut(s) 448
Hpy188III TCNNGA 3 cut(s) 8, 119, 191
Hpy8I GTNNAC 2 cut(s) 127, 386
HpyAV CCTTC 2 cut(s) 244, 334
HpyCH4III ACNGT 2 cut(s) 29, 71
HpyCH4V TGCA 4 cut(s) 127, 326, 467, 475
HpyF10VI GCNNNNNNNGC 3 cut(s) 100, 193, 478
HpyF3I CTNAG 1 cut(s) 518
Hsp92II CATG 7 cut(s) 88, 182, 208, 280, 326, 340, 471
Kzo9I GATC 2 cut(s) 153, 169
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 3 cut(s) 21, 132, 506
Lsp1109I GCAGC 2 cut(s) 420, 459
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 482
MaeIII GTNAC 1 cut(s) 271
MalI GATC 2 cut(s) 155, 171
MboI GATC 2 cut(s) 153, 169
MboII GAAGA 2 cut(s) 56, 497
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 2 cut(s) 136, 243
MnlI CCTC 3 cut(s) 141, 298, 513
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 335
MwoI GCNNNNNNNGC 3 cut(s) 100, 193, 478
NdeII GATC 2 cut(s) 153, 169
NlaIII CATG 7 cut(s) 88, 182, 208, 280, 326, 340, 471
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 1 cut(s) 88
PceI AGGCCT 1 cut(s) 486
PfeI GAWTC 1 cut(s) 115
PflMI CCANNNNNTGG 1 cut(s) 380
PkrI GCNGC 2 cut(s) 410, 474
PspPI GGNCC 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 335
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 2 cut(s) 409, 473
Sau3AI GATC 2 cut(s) 153, 169
Sau96I GGNCC 1 cut(s) 101
SduI GDGCHC 1 cut(s) 129
SetI ASST 6 cut(s) 79, 177, 198, 413, 519, 524
SfaNI GCATC 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 2 cut(s) 136, 243
SseBI AGGCCT 1 cut(s) 486
SspI AATATT 2 cut(s) 165, 400
SspMI CTAG 1 cut(s) 482
StuI AGGCCT 1 cut(s) 486
TaaI ACNGT 2 cut(s) 29, 71
TaqI TCGA 2 cut(s) 168, 415
TasI AATT 2 cut(s) 136, 243
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 2 cut(s) 408, 472
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 4 cut(s) 167, 174, 353, 467
Van91I CCANNNNNTGG 1 cut(s) 380
VneI GTGCAC 1 cut(s) 125
XceI RCATGY 1 cut(s) 88
XmiI GTMKAC 1 cut(s) 385
XspI CTAG 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.