Rroxscaffold_2G00127180

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000068
Physical Location & Seq
Forward (+)
62642495 .. 62644530
2036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00127180.1

Sequence Viewer

Length: 1578 bp
ATGAAGATCCAAAAACAACAATGGGGAGTCGAAGACTACTTTCCTGAAGAAATCGTGGACAAAATCCTGTTGAAGTTGCCCGTCAAAGAGGTTATCAGATGCAGCGCCGTGTGCAAGTTATGGAACTCTCTCATCAAAAACCCTACCTTCATTCAAACCCACCTCAAGAATCAAACCCACGACGGCGTTTCGGAGCTCCTCCTACTCAGCTCCCACCAATCAGACGATCTGCATTGGGATAACCCTGCAGCTTTATTCGGTCTGTATTCCAACCTCCGAAATCCAATTCACAACAACAACAGTAGCAATTGGACCAAAGGTATCAGTTACCAAGTGGTCGGAACTTGTAACGGACTCGTATGCCTTTCTCTTTACTCATTTGACCGTGACCCATGCCCTCCTGTAATTCTCTGGAATCCATCCATTAGAAAGTTTGGGTTTTTGCCTAGTCCCAGTCGTGCCGTTGATTGCTGCCGGAATGAAAGTTATTATTTCTGCTATGATTCTCGTATTGATGATTATAAGGTTGTGAGAATTGTCGAGAGAATCCATCGCGAGGTTGAGGTTGAGGTCTGGTCCTTAGCCTCAGGAGGTGCTTGGAAGAGTCTTAATAATAATGTTCCTGCCGATTTTTCCCCTTATAGACACTGTCATGCTTTTGTCAACGGTGCTTTTCACTGGGTTCAAAGCCGCCCGACGAAGGAGGAGGAGGAGGAGGAGTTTGCTGTTTCCGTTGTGGCATTGGATACGGTTGATGAATCATTTCGCAATGTCGAGATTCGCCAAGGTTGGAGTGGTCCACCAATGATTTCAAGGTACCATGGTGATGGGGATCAGTGCTGGCTTGCGTTATTTGAGTTGCAGGGAGACTCTTGTTTTGACTTGTGGGTGATGAAAGAGTACGGTGTGGCCGAATCATGGACTAAATTATTCAATGTGCGTCTGCTAGGATCTCCGGAAGAAGAACCTCGGATCGAGCCATTTGGTTTTACAAAGAGTGGTCAGGTGGTGGTCAGAATGGGTCGGGACGAAGAGTTCAATTCGTTCAAGTCTTATGACCCCAAGGACAAACAGTTTAGAGATTTTGGAAATCAGGCATATGACTACTACTTCATGGATTCTTTCGTGGAGAGCCTCGTCTTACTTGGCCAAACCAATGGATATTACCACTACTTCATGGGGTTCTTGGACAGCTTATTTTATTTGGCCAAACAAACCTTATTTTTTCTAAGTGGGAATCAGAATCAACAACAAAAGATGATCAGAAGTGGAACCATAAGAATGTTCGATTACACTCTTCCACTCACAAATCTGCAGCACTGCAATAAGTTTACTCCTCCGGCGTACAACATGGCAATTATTCCGAAAGACATTCCTCTTTTCCTCGGCTATGGAGGGAAAGATACAATTTCGGACGTCAACGATGTGAAGCTTTTGCTTAATGACCTCAAAGATCATGTCAAGGACAAGCTTGTGGAACAATACGTAGAGGAGTATGCTCACATGGATTTCTTTATGGGTTGGAATGCCAGACATAAAGTCTATGATCCTCTCCTCACTTTCTTCGGGCAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

525

Amino Acids

60.94

Weight (kDa)

5.55

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 14 - 50 1.4e-09 F-box domain
F-box-like PF12937 15 - 49 2.4e-07 F-box-like
FBA_3 PF08268 96 - 366 9.6e-18 F-box associated beta propeller domain
FBA_1 PF07734 103 - 380 5.3e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 522
AatII GACGTC 1 cut(s) 1419
Acc65I GGTACC 1 cut(s) 816
AccB1I GGYRCC 1 cut(s) 816
AccII CGCG 1 cut(s) 555
AccIII TCCGGA 1 cut(s) 955
AciI CCGC 1 cut(s) 691
AclWI GGATC 4 cut(s) 840, 958, 980, 1541
AcoI YGGCCR 3 cut(s) 909, 1147, 1206
AcuI CTGAAG 1 cut(s) 66
AcyI GRCGYC 1 cut(s) 1416
AfaI GTAC 3 cut(s) 818, 902, 1346
AfiI CCNNNNNNNGG 3 cut(s) 556, 700, 918
AgsI TTSAA 7 cut(s) 73, 155, 686, 813, 934, 1039, 1048
AhdI GACNNNNNGTC 1 cut(s) 1538
AloI GAACNNNNNNTCC 2 cut(s) 1019, 1051
AluBI AGCT 6 cut(s) 196, 210, 251, 1194, 1432, 1471
AluI AGCT 6 cut(s) 196, 210, 251, 1194, 1432, 1471
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 1 cut(s) 861
AlwI GGATC 4 cut(s) 840, 958, 980, 1541
Aor13HI TCCGGA 1 cut(s) 955
AoxI GGCC 3 cut(s) 909, 1147, 1206
ApeKI GCWGC 4 cut(s) 102, 248, 471, 1315
ArsI GACNNNNNNTTYG 4 cut(s) 860, 892, 1443, 1475
Asp700I GAANNNNTTC 1 cut(s) 762
Asp718I GGTACC 1 cut(s) 816
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 3 cut(s) 312, 576, 797
AsuHPI GGTGA 2 cut(s) 836, 901
AvaII GGWCC 3 cut(s) 312, 576, 797
AxyI CCTNAGG 1 cut(s) 586
BaeI ACNNNNGTAYC 2 cut(s) 808, 841
BalI TGGCCA 2 cut(s) 1149, 1208
BanI GGYRCC 1 cut(s) 816
BanII GRGCYC 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 4 cut(s) 114, 260, 458, 1327
BccI CCATC 3 cut(s) 427, 558, 821
BceAI ACGGC 3 cut(s) 92, 199, 446
BciVI GTATCC 1 cut(s) 739
BclI TGATCA 1 cut(s) 1260
BcoDI GTCTC 1 cut(s) 861
BfaI CTAG 2 cut(s) 447, 947
BfmI CTRYAG 2 cut(s) 246, 1313
BfoI RGCGCY 1 cut(s) 108
BfuI GTATCC 1 cut(s) 739
BisI GCNGC 5 cut(s) 103, 249, 472, 691, 1316
BlsI GCNGC 5 cut(s) 104, 250, 473, 692, 1317
Bme18I GGWCC 3 cut(s) 312, 576, 797
BmeRI GACNNNNNGTC 1 cut(s) 1538
BmgT120I GGNCC 3 cut(s) 312, 576, 797
BmiI GGNNCC 2 cut(s) 818, 1273
BmrI ACTGGG 2 cut(s) 447, 688
BmsI GCATC 1 cut(s) 89
BmuI ACTGGG 2 cut(s) 447, 688
BpiI GAAGAC 1 cut(s) 39
Bpu10I CCTNAGC 1 cut(s) 580
BpuEI CTTGAG 1 cut(s) 149
BsaAI YACGTR 1 cut(s) 1486
BsaBI GATNNNNATC 1 cut(s) 831
BsaHI GRCGYC 1 cut(s) 1416
BsaJI CCNNGG 5 cut(s) 784, 820, 968, 1062, 1384
BsaWI WCCGGW 1 cut(s) 955
BsaXI ACNNNNNCTCC 2 cut(s) 704, 734
Bsc4I CCNNNNNNNGG 3 cut(s) 556, 700, 918
Bse1I ACTGG 2 cut(s) 453, 683
Bse21I CCTNAGG 1 cut(s) 586
Bse3DI GCAATG 1 cut(s) 775
Bse8I GATNNNNATC 1 cut(s) 831
BseAI TCCGGA 1 cut(s) 955
BseDI CCNNGG 5 cut(s) 784, 820, 968, 1062, 1384
BseGI GGATG 1 cut(s) 419
BseJI GATNNNNATC 1 cut(s) 831
BseLI CCNNNNNNNGG 3 cut(s) 556, 700, 918
BseMI GCAATG 1 cut(s) 775
BseMII CTCAG 2 cut(s) 220, 600
BseNI ACTGG 2 cut(s) 453, 683
BseRI GAGGAG 9 cut(s) 188, 719, 722, 725, 728, 731, 1326, 1505, 1544
BseXI GCAGC 4 cut(s) 114, 260, 458, 1327
Bsh1236I CGCG 1 cut(s) 555
BshFI GGCC 3 cut(s) 911, 1149, 1208
BshNI GGYRCC 1 cut(s) 816
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 3 cut(s) 475, 956, 1340
BslFI GGGAC 2 cut(s) 435, 1040
BslI CCNNNNNNNGG 3 cut(s) 556, 700, 918
BsmAI GTCTC 1 cut(s) 861
BsmFI GGGAC 2 cut(s) 435, 1040
BsmI GAATGC 1 cut(s) 1531
BsnI GGCC 3 cut(s) 911, 1149, 1208
Bsp1286I GDGCHC 1 cut(s) 198
Bsp13I TCCGGA 1 cut(s) 955
Bsp143I GATC 8 cut(s) 6, 226, 832, 950, 972, 1260, 1453, 1546
Bsp19I CCATGG 1 cut(s) 820
Bsp68I TCGCGA 1 cut(s) 555
BspACI CCGC 1 cut(s) 691
BspANI GGCC 3 cut(s) 911, 1149, 1208
BspCNI CTCAG 2 cut(s) 219, 599
BspEI TCCGGA 1 cut(s) 955
BspFNI CGCG 1 cut(s) 555
BspLI GGNNCC 2 cut(s) 818, 1273
BspMAI CTGCAG 2 cut(s) 250, 1317
BspPI GGATC 4 cut(s) 840, 958, 980, 1541
BspT107I GGYRCC 1 cut(s) 816
BsrDI GCAATG 1 cut(s) 775
BsrI ACTGG 2 cut(s) 453, 683
BssECI CCNNGG 5 cut(s) 784, 820, 968, 1062, 1384
BssMI GATC 8 cut(s) 6, 226, 832, 950, 972, 1260, 1453, 1546
BssNI GRCGYC 1 cut(s) 1416
BssT1I CCWWGG 3 cut(s) 784, 820, 1062
Bst4CI ACNGT 7 cut(s) 302, 386, 650, 668, 751, 905, 1074
Bst6I CTCTTC 3 cut(s) 596, 1026, 1302
BstACI GRCGYC 1 cut(s) 1416
BstBAI YACGTR 1 cut(s) 1486
BstC8I GCNNGC 2 cut(s) 842, 846
BstDEI CTNAG 4 cut(s) 206, 580, 586, 1229
BstDSI CCRYGG 1 cut(s) 820
BstF5I GGATG 1 cut(s) 419
BstFNI CGCG 1 cut(s) 555
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 8 cut(s) 9, 229, 835, 953, 975, 1263, 1456, 1549
BstMAI GTCTC 1 cut(s) 861
BstMBI GATC 8 cut(s) 6, 226, 832, 950, 972, 1260, 1453, 1546
BstMWI GCNNNNNNNGC 1 cut(s) 111
BstSFI CTRYAG 2 cut(s) 246, 1313
BstSNI TACGTA 1 cut(s) 1486
BstUI CGCG 1 cut(s) 555
BstV1I GCAGC 4 cut(s) 114, 260, 458, 1327
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 2 cut(s) 6, 950
BstXI CCANNNNNNTGG 2 cut(s) 827, 1157
BstYI RGATCY 2 cut(s) 6, 950
Bsu36I CCTNAGG 1 cut(s) 586
BsuI GTATCC 1 cut(s) 739
BsuRI GGCC 3 cut(s) 911, 1149, 1208
BtgI CCRYGG 1 cut(s) 820
BtgZI GCGATG 1 cut(s) 536
BtsCI GGATG 1 cut(s) 419
BtsI GCAGTG 1 cut(s) 1318
BtsIMutI CAGTG 4 cut(s) 646, 676, 842, 1318
BtuMI TCGCGA 1 cut(s) 555
Cac8I GCNNGC 2 cut(s) 842, 846
CfoI GCGC 1 cut(s) 107
Cfr13I GGNCC 3 cut(s) 312, 576, 797
CseI GACGC 1 cut(s) 929
Csp6I GTAC 3 cut(s) 817, 901, 1345
CviAII CATG 9 cut(s) 393, 653, 821, 918, 1114, 1177, 1351, 1457, 1504
CviQI GTAC 3 cut(s) 817, 901, 1345
DdeI CTNAG 4 cut(s) 206, 580, 586, 1229
DpnI GATC 8 cut(s) 8, 228, 834, 952, 974, 1262, 1455, 1548
DpnII GATC 8 cut(s) 6, 226, 832, 950, 972, 1260, 1453, 1546
DriI GACNNNNNGTC 1 cut(s) 1538
EaeI YGGCCR 3 cut(s) 909, 1147, 1206
Eam1104I CTCTTC 3 cut(s) 596, 1026, 1302
Eam1105I GACNNNNNGTC 1 cut(s) 1538
EarI CTCTTC 3 cut(s) 596, 1026, 1302
Ecl136II GAGCTC 1 cut(s) 196
Eco105I TACGTA 1 cut(s) 1486
Eco130I CCWWGG 3 cut(s) 784, 820, 1062
Eco24I GRGCYC 1 cut(s) 198
Eco47I GGWCC 3 cut(s) 312, 576, 797
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 66
Eco81I CCTNAGG 1 cut(s) 586
EcoICRI GAGCTC 1 cut(s) 196
EcoT14I CCWWGG 3 cut(s) 784, 820, 1062
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 3 cut(s) 784, 820, 1062
FaeI CATG 9 cut(s) 396, 656, 824, 921, 1117, 1180, 1354, 1460, 1507
FaqI GGGAC 2 cut(s) 435, 1040
FatI CATG 9 cut(s) 392, 652, 820, 917, 1113, 1176, 1350, 1456, 1503
FauNDI CATATG 1 cut(s) 1099
FbaI TGATCA 1 cut(s) 1260
Fnu4HI GCNGC 5 cut(s) 103, 249, 472, 691, 1316
FokI GGATG 1 cut(s) 406
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 5 cut(s) 103, 249, 472, 691, 1316
FspBI CTAG 2 cut(s) 447, 947
GlaI GCGC 1 cut(s) 106
GluI GCNGC 5 cut(s) 103, 249, 472, 691, 1316
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 3 cut(s) 911, 1149, 1208
HapII CCGG 3 cut(s) 475, 956, 1340
HgaI GACGC 1 cut(s) 929
HhaI GCGC 1 cut(s) 107
Hin1I GRCGYC 1 cut(s) 1416
Hin1II CATG 9 cut(s) 396, 656, 824, 921, 1117, 1180, 1354, 1460, 1507
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HincII GTYRAC 2 cut(s) 664, 1420
HindII GTYRAC 2 cut(s) 664, 1420
HindIII AAGCTT 2 cut(s) 1430, 1469
HpaII CCGG 3 cut(s) 475, 956, 1340
HphI GGTGA 2 cut(s) 836, 901
Hpy166II GTNNAC 5 cut(s) 58, 664, 800, 1332, 1420
Hpy188III TCNNGA 9 cut(s) 44, 166, 412, 541, 554, 588, 775, 956, 1025
Hpy8I GTNNAC 5 cut(s) 58, 664, 800, 1332, 1420
Hpy99I CGWCG 2 cut(s) 185, 700
HpyAV CCTTC 2 cut(s) 157, 694
HpyCH4III ACNGT 7 cut(s) 302, 386, 650, 668, 751, 905, 1074
HpyCH4IV ACGT 2 cut(s) 1416, 1485
HpyCH4V TGCA 7 cut(s) 102, 114, 232, 248, 862, 1315, 1323
HpyF10VI GCNNNNNNNGC 1 cut(s) 111
HpyF3I CTNAG 4 cut(s) 206, 580, 586, 1229
HpySE526I ACGT 2 cut(s) 1416, 1485
Hsp92I GRCGYC 1 cut(s) 1416
Hsp92II CATG 9 cut(s) 396, 656, 824, 921, 1117, 1180, 1354, 1460, 1507
HspAI GCGC 1 cut(s) 105
Kpn2I TCCGGA 1 cut(s) 955
KpnI GGTACC 1 cut(s) 820
Ksp22I TGATCA 1 cut(s) 1260
Kzo9I GATC 8 cut(s) 6, 226, 832, 950, 972, 1260, 1453, 1546
LmnI GCTCC 3 cut(s) 193, 201, 215
Lsp1109I GCAGC 4 cut(s) 114, 260, 458, 1327
LweI GCATC 1 cut(s) 89
MaeI CTAG 2 cut(s) 447, 947
MaeII ACGT 2 cut(s) 1416, 1485
MaeIII GTNAC 3 cut(s) 326, 347, 386
MalI GATC 8 cut(s) 8, 228, 834, 952, 974, 1262, 1455, 1548
MboI GATC 8 cut(s) 6, 226, 832, 950, 972, 1260, 1453, 1546
MboII GAAGA 9 cut(s) 16, 44, 59, 613, 971, 974, 1043, 1289, 1555
MfeI CAATTG 1 cut(s) 307
MflI RGATCY 2 cut(s) 6, 950
MhlI GDGCHC 1 cut(s) 198
MlsI TGGCCA 2 cut(s) 1149, 1208
MluCI AATT 8 cut(s) 285, 307, 405, 534, 926, 1039, 1356, 1407
MluNI TGGCCA 2 cut(s) 1149, 1208
MlyI GAGTC 4 cut(s) 36, 348, 613, 863
MmeI TCCRAC 4 cut(s) 294, 319, 770, 1502
Mox20I TGGCCA 2 cut(s) 1149, 1208
MroI TCCGGA 1 cut(s) 955
MroXI GAANNNNTTC 1 cut(s) 762
MscI TGGCCA 2 cut(s) 1149, 1208
MseI TTAA 2 cut(s) 609, 1440
MslI CAYNNNNRTG 3 cut(s) 651, 825, 1280
Msp20I TGGCCA 2 cut(s) 1149, 1208
MspI CCGG 3 cut(s) 475, 956, 1340
MunI CAATTG 1 cut(s) 307
Mva1269I GAATGC 1 cut(s) 1531
MvnI CGCG 1 cut(s) 555
MwoI GCNNNNNNNGC 1 cut(s) 111
NcoI CCATGG 1 cut(s) 820
NdeI CATATG 1 cut(s) 1099
NdeII GATC 8 cut(s) 6, 226, 832, 950, 972, 1260, 1453, 1546
NlaIII CATG 9 cut(s) 396, 656, 824, 921, 1117, 1180, 1354, 1460, 1507
NlaIV GGNNCC 2 cut(s) 818, 1273
NmeAIII GCCGAG 1 cut(s) 1365
NmuCI GTSAC 1 cut(s) 386
NruI TCGCGA 1 cut(s) 555
PcsI WCGNNNNNNNCGW 1 cut(s) 909
PctI GAATGC 1 cut(s) 1531
PdmI GAANNNNTTC 1 cut(s) 762
PflFI GACNNNGTC 1 cut(s) 648
PkrI GCNGC 5 cut(s) 104, 250, 473, 692, 1317
PleI GAGTC 4 cut(s) 35, 348, 612, 863
PpsI GAGTC 4 cut(s) 35, 348, 612, 863
Ppu21I YACGTR 1 cut(s) 1486
PsiI TTATAA 1 cut(s) 522
Psp124BI GAGCTC 1 cut(s) 198
PspN4I GGNNCC 2 cut(s) 818, 1273
PspPI GGNCC 3 cut(s) 312, 576, 797
PstI CTGCAG 2 cut(s) 250, 1317
PsuI RGATCY 2 cut(s) 6, 950
PsyI GACNNNGTC 1 cut(s) 648
RruI TCGCGA 1 cut(s) 555
RsaI GTAC 3 cut(s) 818, 902, 1346
RsaNI GTAC 3 cut(s) 817, 901, 1345
RseI CAYNNNNRTG 3 cut(s) 651, 825, 1280
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 2 cut(s) 609, 1440
SatI GCNGC 5 cut(s) 103, 249, 472, 691, 1316
Sau3AI GATC 8 cut(s) 6, 226, 832, 950, 972, 1260, 1453, 1546
Sau96I GGNCC 3 cut(s) 312, 576, 797
SchI GAGTC 4 cut(s) 36, 348, 613, 863
SduI GDGCHC 1 cut(s) 198
SfaNI GCATC 1 cut(s) 89
SfcI CTRYAG 2 cut(s) 246, 1313
SinI GGWCC 3 cut(s) 312, 576, 797
SmiMI CAYNNNNRTG 3 cut(s) 651, 825, 1280
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
SnaBI TACGTA 1 cut(s) 1486
Sse9I AATT 8 cut(s) 285, 307, 405, 534, 926, 1039, 1356, 1407
SsiI CCGC 1 cut(s) 691
SspMI CTAG 2 cut(s) 447, 947
SstI GAGCTC 1 cut(s) 198
StyI CCWWGG 3 cut(s) 784, 820, 1062
TaaI ACNGT 7 cut(s) 302, 386, 650, 668, 751, 905, 1074
TaiI ACGT 2 cut(s) 1419, 1488
TaqI TCGA 5 cut(s) 30, 540, 774, 975, 1287
TaqII GACCGA 1 cut(s) 248
TasI AATT 8 cut(s) 285, 307, 405, 534, 926, 1039, 1356, 1407
TauI GCSGC 1 cut(s) 693
Tru1I TTAA 2 cut(s) 609, 1440
Tru9I TTAA 2 cut(s) 609, 1440
TscAI CASTG 4 cut(s) 653, 683, 842, 1325
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 4 cut(s) 102, 248, 471, 1315
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 7 cut(s) 17, 139, 495, 771, 908, 1102, 1165
TspGWI ACGGA 2 cut(s) 366, 721
TspRI CASTG 4 cut(s) 653, 683, 842, 1325
Tth111I GACNNNGTC 1 cut(s) 648
VpaK11BI GGWCC 3 cut(s) 312, 576, 797
XcmI CCANNNNNNNNNTGG 1 cut(s) 791
XmnI GAANNNNTTC 1 cut(s) 762
XspI CTAG 2 cut(s) 447, 947
ZraI GACGTC 1 cut(s) 1417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.