Rorug05G0438700

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000068
Physical Location & Seq
Forward (+)
61004454 .. 61008059
3606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0438700.1

Sequence Viewer

Length: 1098 bp
ATGGAGAATGAGATGGTTGAAGCTAAACAGCCTTCTGGGTATGTTCAGTACAATCTTCTGGGTAACCTTTTTCAGGTCTCTGCCAAGTATGTCCCTCCTATCAGCCCAGTTGGCCGCGGCGCGTACGGGATTGTTTGCTGTGCAACAAACTCTGAGACAAAAGAAGAGGTTGCAATTAAGAAGATTGGGAATGCATTTGACAATAGGATCGATGCCAAGAGGACGCTCCGAGAGATAAAGCTCCTTAGCCATATGGATCATGACAATATTGTCAAAATTAAGGACATCATAAGGCCACCAGATAAGGAGAATTTCAATGACGTTTACATTGTATATGAATTGATGGACACTGACCTAAATCAGATAATAAACTCCAGCCAGCCTTTGACAGATGATCACTGTCAGTACTTTCTGTATCAATTGCTGCGGGGATTGAAGTACATACACTCTGCACATGTTTTGCACCGTGATCTGAAACCAAGCAATCTGCTTCTCAATGCAAATTGTGACCTTAAGATTTGTGACTTTGGGCTTGCAAGAACTACATCTGAGACAGATTTCATGACAGAATATGTTGTCACTCGTTGGTATCGAGCCCCAGAATTACTACTCAACTGTTCCGAATACACTGCTGCTATTGATATTTGGTCAGTAGGATGTATTTTCATGGAGATTCTGATGAGGGAACCACTGTTCCCTGGTAAAGACTATGTACAGCAGTTGGGTCTCATAACTGAGCTACTAGGTTCACCAGAAGATTCAAATCTTGGCTTTCTAAGAAGTGAAAATGCTAAGAAATATGTTAAGCAGCTCCCACATGTCCCAAAGAAACCCTTTGCTCAGAAGTTCCCAAATATCTCACCAGTGGCAATTGATCTCGCAGAAAAAATGCTAGTTTTTGATCCAAGCAAACGTATAACTGTTGAGGAAGCATTGAATCATCCATATTTATCAAGTCTTCATGCGATCAACGAGGAGCCCATTTGCCCGTCTCCTTTCGTCTTTGATTTTGAGCAGGCATCCCTGGATGAAGAAGACATAAAGGAGCTCGTATGGAGGGAGTCTCTGCACTTCAACCCAGATAATATGCAGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

365

Amino Acids

41.85

Weight (kDa)

5.12

Isoelectric Point (pI)

41.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 36 - 317 2.3e-70 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 36 - 227 1e-32 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 269
AccII CGCG 2 cut(s) 117, 122
AciI CCGC 3 cut(s) 115, 117, 427
AclWI GGATC 3 cut(s) 215, 264, 896
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 1 cut(s) 310
AfaI GTAC 5 cut(s) 50, 125, 407, 440, 714
AfiI CCNNNNNNNGG 1 cut(s) 73
AflII CTTAAG 1 cut(s) 512
AflIII ACRYGT 2 cut(s) 454, 817
AgsI TTSAA 6 cut(s) 20, 316, 436, 762, 937, 1075
AjnI CCWGG 2 cut(s) 697, 1023
AloI GAACNNNNNNTCC 4 cut(s) 677, 678, 709, 710
AluBI AGCT 5 cut(s) 23, 241, 739, 811, 1048
AluI AGCT 5 cut(s) 23, 241, 739, 811, 1048
Alw21I GWGCWC 1 cut(s) 1050
Alw26I GTCTC 6 cut(s) 82, 149, 545, 731, 996, 1068
AlwI GGATC 3 cut(s) 215, 264, 896
AoxI GGCC 2 cut(s) 112, 293
ApeKI GCWGC 3 cut(s) 424, 632, 808
ApoI RAATTY 1 cut(s) 310
AspLEI GCGC 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 741, 852
BanII GRGCYC 3 cut(s) 598, 981, 1050
BbsI GAAGAC 2 cut(s) 950, 1041
Bbv12I GWGCWC 1 cut(s) 1050
BbvI GCAGC 3 cut(s) 411, 619, 820
BccI CCATC 2 cut(s) 7, 337
BcgI CGANNNNNNTGC 2 cut(s) 611, 645
BciT130I CCWGG 2 cut(s) 699, 1025
BclI TGATCA 1 cut(s) 394
BcoDI GTCTC 6 cut(s) 82, 149, 545, 731, 996, 1068
BfaI CTAG 2 cut(s) 743, 893
BfrI CTTAAG 1 cut(s) 512
BglI GCCNNNNNGGC 1 cut(s) 111
BisI GCNGC 5 cut(s) 115, 118, 425, 633, 809
BlsI GCNGC 5 cut(s) 116, 119, 426, 634, 810
BmcAI AGTACT 1 cut(s) 407
Bme1390I CCNGG 2 cut(s) 699, 1025
BmiI GGNNCC 2 cut(s) 687, 978
BmrFI CCNGG 2 cut(s) 699, 1025
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 2 cut(s) 202, 1028
BmuI ACTGGG 1 cut(s) 101
BpiI GAAGAC 2 cut(s) 950, 1041
BplI GAGNNNNNCTC 2 cut(s) 1048, 1080
BpmI CTGGAG 1 cut(s) 358
Bpu10I CCTNAGC 1 cut(s) 245
Bsa29I ATCGAT 1 cut(s) 210
BsaBI GATNNNNATC 1 cut(s) 762
BsaI GGTCTC 2 cut(s) 82, 731
BsaJI CCNNGG 3 cut(s) 115, 697, 1023
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 2 cut(s) 107, 863
Bse8I GATNNNNATC 1 cut(s) 762
BseBI CCWGG 2 cut(s) 699, 1025
BseCI ATCGAT 1 cut(s) 210
BseDI CCNNGG 3 cut(s) 115, 697, 1023
BseGI GGATG 4 cut(s) 662, 940, 1019, 1033
BseJI GATNNNNATC 1 cut(s) 762
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMII CTCAG 4 cut(s) 144, 540, 726, 854
BseNI ACTGG 2 cut(s) 107, 863
BseRI GAGGAG 1 cut(s) 989
BseXI GCAGC 3 cut(s) 411, 619, 820
BsgI GTGCAG 2 cut(s) 435, 1052
Bsh1236I CGCG 2 cut(s) 117, 122
BshFI GGCC 2 cut(s) 114, 295
BshVI ATCGAT 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 1050
BsiWI CGTACG 1 cut(s) 123
BslFI GGGAC 2 cut(s) 77, 806
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 6 cut(s) 82, 149, 545, 731, 996, 1068
BsmBI CGTCTC 1 cut(s) 996
BsmFI GGGAC 2 cut(s) 77, 806
BsmI GAATGC 1 cut(s) 196
BsnI GGCC 2 cut(s) 114, 295
Bso31I GGTCTC 2 cut(s) 82, 731
Bsp1286I GDGCHC 3 cut(s) 598, 981, 1050
Bsp1407I TGTACA 1 cut(s) 712
Bsp143I GATC 7 cut(s) 207, 256, 394, 469, 874, 901, 966
BspACI CCGC 3 cut(s) 115, 117, 427
BspANI GGCC 2 cut(s) 114, 295
BspCNI CTCAG 4 cut(s) 145, 541, 727, 853
BspDI ATCGAT 1 cut(s) 210
BspFNI CGCG 2 cut(s) 117, 122
BspHI TCATGA 2 cut(s) 259, 561
BspLI GGNNCC 2 cut(s) 687, 978
BspPI GGATC 3 cut(s) 215, 264, 896
BspTI CTTAAG 1 cut(s) 512
BspTNI GGTCTC 2 cut(s) 82, 731
BsrGI TGTACA 1 cut(s) 712
BsrI ACTGG 2 cut(s) 107, 863
BssECI CCNNGG 3 cut(s) 115, 697, 1023
BssMI GATC 7 cut(s) 207, 256, 394, 469, 874, 901, 966
Bst2UI CCWGG 2 cut(s) 699, 1025
Bst4CI ACNGT 5 cut(s) 401, 467, 617, 693, 922
Bst6I CTCTTC 1 cut(s) 159
BstAFI CTTAAG 1 cut(s) 512
BstAUI TGTACA 1 cut(s) 712
BstC8I GCNNGC 3 cut(s) 380, 534, 1017
BstDEI CTNAG 7 cut(s) 153, 245, 549, 735, 776, 792, 840
BstDSI CCRYGG 1 cut(s) 115
BstEII GGTNACC 1 cut(s) 62
BstENI CCTNNNNNAGG 1 cut(s) 71
BstF5I GGATG 4 cut(s) 662, 940, 1019, 1033
BstFNI CGCG 2 cut(s) 117, 122
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 7 cut(s) 210, 259, 397, 472, 877, 904, 969
BstMAI GTCTC 6 cut(s) 82, 149, 545, 731, 996, 1068
BstMBI GATC 7 cut(s) 207, 256, 394, 469, 874, 901, 966
BstMWI GCNNNNNNNGC 1 cut(s) 111
BstNI CCWGG 2 cut(s) 699, 1025
BstNSI RCATGY 2 cut(s) 458, 821
BstPI GGTNACC 1 cut(s) 62
BstSCI CCNGG 2 cut(s) 697, 1023
BstUI CGCG 2 cut(s) 117, 122
BstV1I GCAGC 3 cut(s) 411, 619, 820
BstV2I GAAGAC 2 cut(s) 950, 1041
Bsu15I ATCGAT 1 cut(s) 210
BsuRI GGCC 2 cut(s) 114, 295
BsuTUI ATCGAT 1 cut(s) 210
BtgI CCRYGG 1 cut(s) 115
BtsCI GGATG 4 cut(s) 662, 940, 1019, 1033
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 5 cut(s) 348, 397, 627, 689, 870
Cac8I GCNNGC 3 cut(s) 380, 534, 1017
CciI TCATGA 2 cut(s) 259, 561
CfoI GCGC 1 cut(s) 122
Cfr42I CCGCGG 1 cut(s) 118
ClaI ATCGAT 1 cut(s) 210
CseI GACGC 1 cut(s) 232
Csp6I GTAC 5 cut(s) 49, 124, 406, 439, 713
CviAII CATG 6 cut(s) 260, 455, 562, 667, 818, 962
CviQI GTAC 5 cut(s) 49, 124, 406, 439, 713
DdeI CTNAG 7 cut(s) 153, 245, 549, 735, 776, 792, 840
DpnI GATC 7 cut(s) 209, 258, 396, 471, 876, 903, 968
DpnII GATC 7 cut(s) 207, 256, 394, 469, 874, 901, 966
DrdI GACNNNNNNGTC 1 cut(s) 269
DseDI GACNNNNNNGTC 1 cut(s) 269
EaeI YGGCCR 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 1048
Eco24I GRGCYC 3 cut(s) 598, 981, 1050
Eco31I GGTCTC 2 cut(s) 82, 731
Eco53kI GAGCTC 1 cut(s) 1048
Eco91I GGTNACC 1 cut(s) 62
EcoICRI GAGCTC 1 cut(s) 1048
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoO65I GGTNACC 1 cut(s) 62
EcoRII CCWGG 2 cut(s) 697, 1023
EcoT22I ATGCAT 1 cut(s) 196
EcoT38I GRGCYC 3 cut(s) 598, 981, 1050
Esp3I CGTCTC 1 cut(s) 996
FaeI CATG 6 cut(s) 263, 458, 565, 670, 821, 965
FalI AAGNNNNNCTT 2 cut(s) 818, 850
FaqI GGGAC 2 cut(s) 77, 806
FatI CATG 6 cut(s) 259, 454, 561, 666, 817, 961
FauI CCCGC 1 cut(s) 420
FauNDI CATATG 1 cut(s) 252
FbaI TGATCA 1 cut(s) 394
Fnu4HI GCNGC 5 cut(s) 115, 118, 425, 633, 809
FokI GGATG 4 cut(s) 669, 927, 1006, 1040
FriOI GRGCYC 3 cut(s) 598, 981, 1050
Fsp4HI GCNGC 5 cut(s) 115, 118, 425, 633, 809
FspBI CTAG 2 cut(s) 743, 893
GlaI GCGC 1 cut(s) 121
GluI GCNGC 5 cut(s) 115, 118, 425, 633, 809
GsuI CTGGAG 1 cut(s) 358
HaeIII GGCC 2 cut(s) 114, 295
HgaI GACGC 1 cut(s) 232
HhaI GCGC 1 cut(s) 122
Hin1II CATG 6 cut(s) 263, 458, 565, 670, 821, 965
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HinfI GANTC 4 cut(s) 673, 758, 937, 1061
HphI GGTGA 2 cut(s) 741, 852
Hpy166II GTNNAC 2 cut(s) 325, 749
Hpy188I TCNGA 8 cut(s) 154, 230, 363, 474, 550, 622, 678, 843
Hpy188III TCNNGA 2 cut(s) 260, 562
Hpy8I GTNNAC 2 cut(s) 325, 749
HpyAV CCTTC 1 cut(s) 42
HpyCH4III ACNGT 5 cut(s) 401, 467, 617, 693, 922
HpyCH4IV ACGT 2 cut(s) 321, 913
HpyCH4V TGCA 9 cut(s) 143, 173, 194, 452, 463, 500, 536, 1069, 1090
HpyF10VI GCNNNNNNNGC 1 cut(s) 111
HpyF3I CTNAG 7 cut(s) 153, 245, 549, 735, 776, 792, 840
HpySE526I ACGT 2 cut(s) 321, 913
Hsp92II CATG 6 cut(s) 263, 458, 565, 670, 821, 965
HspAI GCGC 1 cut(s) 120
Ksp22I TGATCA 1 cut(s) 394
KspI CCGCGG 1 cut(s) 118
Kzo9I GATC 7 cut(s) 207, 256, 394, 469, 874, 901, 966
LmnI GCTCC 5 cut(s) 231, 246, 816, 976, 1045
Lsp1109I GCAGC 3 cut(s) 411, 619, 820
LweI GCATC 2 cut(s) 202, 1028
MaeI CTAG 2 cut(s) 743, 893
MaeII ACGT 2 cut(s) 321, 913
MaeIII GTNAC 4 cut(s) 62, 506, 521, 577
MalI GATC 7 cut(s) 209, 258, 396, 471, 876, 903, 968
MboI GATC 7 cut(s) 207, 256, 394, 469, 874, 901, 966
MboII GAAGA 7 cut(s) 47, 176, 193, 767, 950, 1043, 1046
MfeI CAATTG 2 cut(s) 419, 870
MhlI GDGCHC 3 cut(s) 598, 981, 1050
MluCI AATT 8 cut(s) 174, 276, 310, 338, 419, 502, 602, 870
MlyI GAGTC 1 cut(s) 1070
MnlI CCTC 7 cut(s) 105, 160, 213, 675, 919, 967, 1050
Mph1103I ATGCAT 1 cut(s) 196
MseI TTAA 4 cut(s) 177, 279, 513, 804
MspA1I CMGCKG 1 cut(s) 117
MspCI CTTAAG 1 cut(s) 512
MspR9I CCNGG 2 cut(s) 699, 1025
MunI CAATTG 2 cut(s) 419, 870
Mva1269I GAATGC 1 cut(s) 196
MvaI CCWGG 2 cut(s) 699, 1025
MvnI CGCG 2 cut(s) 117, 122
MwoI GCNNNNNNNGC 1 cut(s) 111
NdeI CATATG 1 cut(s) 252
NdeII GATC 7 cut(s) 207, 256, 394, 469, 874, 901, 966
NlaIII CATG 6 cut(s) 263, 458, 565, 670, 821, 965
NlaIV GGNNCC 2 cut(s) 687, 978
NmuCI GTSAC 3 cut(s) 506, 521, 577
NsiI ATGCAT 1 cut(s) 196
NspI RCATGY 2 cut(s) 458, 821
PagI TCATGA 2 cut(s) 259, 561
PciI ACATGT 2 cut(s) 454, 817
PcsI WCGNNNNNNNCGW 1 cut(s) 589
PctI GAATGC 1 cut(s) 196
PfeI GAWTC 3 cut(s) 673, 758, 937
Pfl23II CGTACG 1 cut(s) 123
PkrI GCNGC 5 cut(s) 116, 119, 426, 634, 810
PleI GAGTC 1 cut(s) 1069
PpsI GAGTC 1 cut(s) 1069
PscI ACATGT 2 cut(s) 454, 817
Psp124BI GAGCTC 1 cut(s) 1050
Psp6I CCWGG 2 cut(s) 697, 1023
PspEI GGTNACC 1 cut(s) 62
PspGI CCWGG 2 cut(s) 697, 1023
PspLI CGTACG 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 687, 978
RsaI GTAC 5 cut(s) 50, 125, 407, 440, 714
RsaNI GTAC 5 cut(s) 49, 124, 406, 439, 713
SacI GAGCTC 1 cut(s) 1050
SacII CCGCGG 1 cut(s) 118
SaqAI TTAA 4 cut(s) 177, 279, 513, 804
SatI GCNGC 5 cut(s) 115, 118, 425, 633, 809
Sau3AI GATC 7 cut(s) 207, 256, 394, 469, 874, 901, 966
ScaI AGTACT 1 cut(s) 407
SchI GAGTC 1 cut(s) 1070
ScrFI CCNGG 2 cut(s) 699, 1025
SduI GDGCHC 3 cut(s) 598, 981, 1050
SfaNI GCATC 2 cut(s) 202, 1028
Sfr303I CCGCGG 1 cut(s) 118
SgrBI CCGCGG 1 cut(s) 118
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 8 cut(s) 174, 276, 310, 338, 419, 502, 602, 870
SsiI CCGC 3 cut(s) 115, 117, 427
SspI AATATT 1 cut(s) 268
SspMI CTAG 2 cut(s) 743, 893
SstI GAGCTC 1 cut(s) 1050
StyD4I CCNGG 2 cut(s) 697, 1023
TaaI ACNGT 5 cut(s) 401, 467, 617, 693, 922
TaiI ACGT 2 cut(s) 324, 916
TaqI TCGA 2 cut(s) 210, 592
TasI AATT 8 cut(s) 174, 276, 310, 338, 419, 502, 602, 870
TatI WGTACW 4 cut(s) 48, 405, 438, 712
TauI GCSGC 2 cut(s) 117, 120
TfiI GAWTC 3 cut(s) 673, 758, 937
Tru1I TTAA 4 cut(s) 177, 279, 513, 804
Tru9I TTAA 4 cut(s) 177, 279, 513, 804
TscAI CASTG 5 cut(s) 355, 404, 634, 696, 870
TseFI GTSAC 3 cut(s) 506, 521, 577
TseI GCWGC 3 cut(s) 424, 632, 808
Tsp45I GTSAC 3 cut(s) 506, 521, 577
TspDTI ATGAA 5 cut(s) 351, 550, 655, 950, 1044
TspRI CASTG 5 cut(s) 355, 404, 634, 696, 870
Vha464I CTTAAG 1 cut(s) 512
XagI CCTNNNNNAGG 1 cut(s) 71
XapI RAATTY 1 cut(s) 310
XceI RCATGY 2 cut(s) 458, 821
XspI CTAG 2 cut(s) 743, 893
ZrmI AGTACT 1 cut(s) 407
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.