Rmu_sc0011187.1_g000003

F-box and associated interaction domains-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011187.1
Physical Location & Seq
Forward (+)
10384 .. 10824
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011187.1_g000003.1.cds

Sequence Viewer

Length: 441 bp
atgtccgactaccttcctaaagaaaccactcgtacaagtattaatggaaaatcaaaagctgcagcaatatcacactaccttgttcctgaagaaatcattcgcgaaatcctgctgtggttgccggccaaatctttatgcagattcagcacgttgtgcaagtcatggagctctatgatccaacactccactttcattgacacccatctcaagcgcagaggtcaatgcaacaaccgaaacgacattgttcatcttctactaagcgcgcacaccactgcgagtagttgcacgtcgtatgtgatgaaagacgacgcaatattggatggagatgagtgctataccaagtttaaatatccttcatcggaacatttagatgtggatttctgtagtctgatcggaatttgtaacggcctcacatgcctgcatatggcgacatgcccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

146

Amino Acids

16.42

Weight (kDa)

7.02

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 102, 263
AclWI GGATC 1 cut(s) 169
AcoI YGGCCR 1 cut(s) 123
AcsI RAATTY 1 cut(s) 396
AcuI CTGAAG 1 cut(s) 108
AdeI CACNNNGTG 1 cut(s) 153
AfaI GTAC 1 cut(s) 34
AfiI CCNNNNNNNGG 1 cut(s) 424
AjiI CACGTC 1 cut(s) 288
AluBI AGCT 2 cut(s) 59, 168
AluI AGCT 2 cut(s) 59, 168
Alw21I GWGCWC 1 cut(s) 170
AlwI GGATC 1 cut(s) 169
AoxI GGCC 2 cut(s) 123, 406
ApeKI GCWGC 2 cut(s) 59, 62
ApoI RAATTY 1 cut(s) 396
AseI ATTAAT 1 cut(s) 42
Asp700I GAANNNNTTC 1 cut(s) 96
AspLEI GCGC 3 cut(s) 213, 263, 265
BanII GRGCYC 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 170
BbvI GCAGC 2 cut(s) 46, 74
BccI CCATC 2 cut(s) 210, 314
BceAI ACGGC 1 cut(s) 421
BfmI CTRYAG 2 cut(s) 60, 382
BisI GCNGC 2 cut(s) 60, 63
BlsI GCNGC 2 cut(s) 61, 64
BmgBI CACGTC 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 191
Bsc4I CCNNNNNNNGG 1 cut(s) 424
Bse118I RCCGGY 1 cut(s) 121
BseGI GGATG 1 cut(s) 325
BseLI CCNNNNNNNGG 1 cut(s) 424
BsePI GCGCGC 1 cut(s) 261
BseXI GCAGC 2 cut(s) 46, 74
Bsh1236I CGCG 2 cut(s) 102, 263
BshFI GGCC 2 cut(s) 125, 408
BsiHKAI GWGCWC 1 cut(s) 170
BsiSI CCGG 1 cut(s) 122
BslI CCNNNNNNNGG 1 cut(s) 424
BsnI GGCC 2 cut(s) 125, 408
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 2 cut(s) 174, 390
Bsp68I TCGCGA 1 cut(s) 102
BspANI GGCC 2 cut(s) 125, 408
BspFNI CGCG 2 cut(s) 102, 263
BspMAI CTGCAG 1 cut(s) 64
BspPI GGATC 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 121
BssAI RCCGGY 1 cut(s) 121
BssHII GCGCGC 1 cut(s) 261
BssMI GATC 2 cut(s) 174, 390
BstAPI GCANNNNNTGC 1 cut(s) 153
BstC8I GCNNGC 3 cut(s) 123, 263, 419
BstDEI CTNAG 1 cut(s) 257
BstF5I GGATG 1 cut(s) 325
BstFNI CGCG 2 cut(s) 102, 263
BstHHI GCGC 3 cut(s) 213, 263, 265
BstKTI GATC 2 cut(s) 177, 393
BstMBI GATC 2 cut(s) 174, 390
BstMWI GCNNNNNNNGC 4 cut(s) 118, 144, 153, 414
BstNSI RCATGY 2 cut(s) 417, 435
BstSFI CTRYAG 2 cut(s) 60, 382
BstUI CGCG 2 cut(s) 102, 263
BstV1I GCAGC 2 cut(s) 46, 74
BsuRI GGCC 2 cut(s) 125, 408
BtrI CACGTC 1 cut(s) 288
BtsCI GGATG 1 cut(s) 325
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 270
BtuMI TCGCGA 1 cut(s) 102
Cac8I GCNNGC 3 cut(s) 123, 263, 419
CfoI GCGC 3 cut(s) 213, 263, 265
Cfr10I RCCGGY 1 cut(s) 121
CseI GACGC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 33
CspCI CAANNNNNGTGG 2 cut(s) 175, 210
CviAII CATG 4 cut(s) 162, 414, 432, 438
CviJI RGCY 4 cut(s) 59, 125, 168, 408
CviKI_1 RGCY 4 cut(s) 59, 125, 168, 408
CviQI GTAC 1 cut(s) 33
DdeI CTNAG 1 cut(s) 257
DpnI GATC 2 cut(s) 176, 392
DpnII GATC 2 cut(s) 174, 390
DraI TTTAAA 1 cut(s) 346
DraIII CACNNNGTG 1 cut(s) 153
EaeI YGGCCR 1 cut(s) 123
Ecl136II GAGCTC 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 170
Eco53kI GAGCTC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 108
EcoICRI GAGCTC 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 170
FaeI CATG 4 cut(s) 165, 417, 435, 441
FatI CATG 4 cut(s) 161, 413, 431, 437
FauNDI CATATG 1 cut(s) 423
Fnu4HI GCNGC 2 cut(s) 60, 63
FokI GGATG 1 cut(s) 332
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 2 cut(s) 60, 63
GlaI GCGC 3 cut(s) 212, 262, 264
GluI GCNGC 2 cut(s) 60, 63
HaeIII GGCC 2 cut(s) 125, 408
HapII CCGG 1 cut(s) 122
HgaI GACGC 1 cut(s) 317
HhaI GCGC 3 cut(s) 213, 263, 265
Hin1II CATG 4 cut(s) 165, 417, 435, 441
Hin6I GCGC 3 cut(s) 211, 261, 263
HinP1I GCGC 3 cut(s) 211, 261, 263
HinfI GANTC 1 cut(s) 141
HpaII CCGG 1 cut(s) 122
Hpy188I TCNGA 4 cut(s) 7, 361, 390, 395
Hpy188III TCNNGA 2 cut(s) 86, 101
Hpy99I CGWCG 2 cut(s) 292, 311
HpyAV CCTTC 2 cut(s) 23, 363
HpyCH4IV ACGT 2 cut(s) 149, 287
HpyCH4V TGCA 6 cut(s) 62, 138, 156, 225, 285, 421
HpyF10VI GCNNNNNNNGC 4 cut(s) 118, 144, 153, 414
HpyF3I CTNAG 1 cut(s) 257
HpySE526I ACGT 2 cut(s) 149, 287
Hsp92II CATG 4 cut(s) 165, 417, 435, 441
HspAI GCGC 3 cut(s) 211, 261, 263
KroI GCCGGC 1 cut(s) 121
KroNI GCCGGC 1 cut(s) 123
Kzo9I GATC 2 cut(s) 174, 390
LmnI GCTCC 1 cut(s) 165
LpnPI CCDG 4 cut(s) 99, 122, 135, 431
Lsp1109I GCAGC 2 cut(s) 46, 74
MaeII ACGT 2 cut(s) 149, 287
MaeIII GTNAC 1 cut(s) 401
MalI GATC 2 cut(s) 176, 392
MboI GATC 2 cut(s) 174, 390
MboII GAAGA 2 cut(s) 101, 242
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 1 cut(s) 396
MmeI TCCRAC 2 cut(s) 30, 202
MnlI CCTC 2 cut(s) 209, 419
MroNI GCCGGC 1 cut(s) 121
MroXI GAANNNNTTC 1 cut(s) 96
MseI TTAA 2 cut(s) 42, 345
MslI CAYNNNNRTG 2 cut(s) 369, 436
MspI CCGG 1 cut(s) 122
MvnI CGCG 2 cut(s) 102, 263
MwoI GCNNNNNNNGC 4 cut(s) 118, 144, 153, 414
NaeI GCCGGC 1 cut(s) 123
NdeI CATATG 1 cut(s) 423
NdeII GATC 2 cut(s) 174, 390
NgoMIV GCCGGC 1 cut(s) 121
NlaIII CATG 4 cut(s) 165, 417, 435, 441
NruI TCGCGA 1 cut(s) 102
NspI RCATGY 2 cut(s) 417, 435
PauI GCGCGC 1 cut(s) 261
PdiI GCCGGC 1 cut(s) 123
PdmI GAANNNNTTC 1 cut(s) 96
PfeI GAWTC 1 cut(s) 141
PkrI GCNGC 2 cut(s) 61, 64
PshBI ATTAAT 1 cut(s) 42
Psp124BI GAGCTC 1 cut(s) 170
PstI CTGCAG 1 cut(s) 64
PteI GCGCGC 1 cut(s) 261
RruI TCGCGA 1 cut(s) 102
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
RseI CAYNNNNRTG 2 cut(s) 369, 436
SacI GAGCTC 1 cut(s) 170
SaqAI TTAA 2 cut(s) 42, 345
SatI GCNGC 2 cut(s) 60, 63
Sau3AI GATC 2 cut(s) 174, 390
SduI GDGCHC 1 cut(s) 170
SetI ASST 7 cut(s) 15, 61, 81, 152, 170, 220, 290
SfcI CTRYAG 2 cut(s) 60, 382
SmiMI CAYNNNNRTG 2 cut(s) 369, 436
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 1 cut(s) 396
SspI AATATT 1 cut(s) 315
SstI GAGCTC 1 cut(s) 170
TaiI ACGT 2 cut(s) 152, 290
TasI AATT 1 cut(s) 396
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 2 cut(s) 42, 345
Tru9I TTAA 2 cut(s) 42, 345
TscAI CASTG 1 cut(s) 277
TseI GCWGC 2 cut(s) 59, 62
TspDTI ATGAA 4 cut(s) 181, 236, 314, 345
TspRI CASTG 1 cut(s) 277
VspI ATTAAT 1 cut(s) 42
XapI RAATTY 1 cut(s) 396
XceI RCATGY 2 cut(s) 417, 435
XmnI GAANNNNTTC 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.