FvH4_1g22290

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000068
Physical Location & Seq
Reverse (-)
14176670 .. 14183337
6668 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22290.t1

Sequence Viewer

Length: 1854 bp
ATGGAAAACAATTACTTTCCTGAAGATATCATAGGCAAGATCCTGGTGAAATTGCTCGTCAAAGACGTCATCAGATGCAGCGCCGTGTGCAAGTCATGGAACTCCCTCGTCAAAACCCTTACCTTCATTCAAACCCACCTCAACAATCAAACCACTGCCGGCGACGTTTCGAGGCTCCTCCTTCTCATCTCCCTCCAATCAAACGATTTGCATTGGGATAACCCTGCATCTTCATTCGGTCAGTATTCGAAACTCCTAAATCCAATTCTCAGCAATAAGAATAGTAGCTGGACTAAAGGTATGGATTACGAAGTGATCGGAACTTGTAACGGACTCGTAGGCCTGGCTATTTCCTCATCTTATATTGACCCCTGCCCTCCTGTAATTCTCTGGAATCCTTCCATAAGAAAATTCGGGTTTTTGCCTAGTCCTAGTCGTGCCGTTGAGTGCTACCGGTATGAAAGTTATAGTCTCTGCTACGATTCTCGTATCGGTGATTATAAGGTTGTGAGAATTGTCATGGAACCTGATCGCGAGGTTGAGGTTGAGGTTTGGTCCTTAGCCAGGGGTACCTGGAAGAGTCTTAGTAATGTTCCTGCTGATTTCCCCCCTTATACAGATCGTACTGCTTTTGTCAACGGTGCTTTTCACTGGGTTCAACGCCACCATACAAGGAAGGGGGAGATGGACGAGGACTGTACAGTTTCCGTTGTGGCATTGGACATGGTTGATGAATCATTTCGTAATGTCGAGATTCGCCAAGGTTTTTGCAGAGACTATCCACCCATGATTTCAAAGTACCATGGTGGTGGGGATCATTTGTGGCTTGCCTTATTTGAGATTCAGGGAAACTCGTCTTTTGACTTGTGGGTGATGAAAGAGTACGGTGTGGTGGAATCATGGACTAAATTATTCGATGTGTGTCTGCTAGGACCTCCGGAAGAAGAACCTTGTGTCGAGCCACTTGGTCTTACAAAGAGTGGTCATGTGGTGGTCAGATGGGGTCGAGATTTTGAGTTTACTTCGTTCAAGACTTATGACCCTAAGGACAAACAGTTTAGAGATTTTGGAAATGAGGCATATCACTACTACTTCATGGATTCTTTCGTGGAGAGCCTTCCCCCAATTTTCACATCTCTCATTTTGTTTCCCACACTTCGTCGTAATATCCAGAGCCACGCCGCCGTCTGCGTTTGCCGGACCCCCGCCGTGTCCATCGTCGAAGGCCCGCCGTCTCCGATCGCCGGGAAGGACCAGCTAGTGATTATGATGGCAGGTGGAGAACAAGCGCCACTGTCGTTGGAGCTTACATTGGGTGGACCATGGGTTGGAGAGCCATGGGTGTCTGCTGATACAAGCGAAGAATACCTAAAGATGAGAAAGATTTGTATGAATCTTATGGGCTTTAAGGTTTACAGTCTGAAGGATGAGGCGGACGAGACTGAAGCCAAGGTTTGCACACGATTGGCACTGTGCAGTTCATTTGATCCGTGGATCATGAAGAAGCCGTTGGGGCACCATGATATCATACACAGGCTGTGCTTGCGGAAGCTATGGATGGACCGGGACGTGCTCCCTAACCTGAATGAGCAAGCCAAGCATGAAATGGATCATGATGACAGGACCATAGTCCAAATTTATGATGCGGACACACAATCCAACCATGAGGTGGAGTTGAGGAGTGAGGCGGCGGGTATTTTTTTCAGAGCATCGTGGATTCAGAATTTTGTAGATAGAAGACAGTTGAAACAAGGGGACGCAATCGGCATATATTGGGAAACTGGGAAACACCGCTCTGTGTTCAGCGTATTGAAGAGAGCACCAAGAACTAGGGAAGAATTGCTTCGGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

618

Amino Acids

70.52

Weight (kDa)

5.84

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 42 1.2e-07 F-box domain
F-box-like PF12937 7 - 38 1.9e-06 F-box-like
FBA_3 PF08268 89 - 356 5.3e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 501
AarI CACCTGC 1 cut(s) 1265
AatII GACGTC 1 cut(s) 69
Acc36I ACCTGC 1 cut(s) 1265
Acc65I GGTACC 1 cut(s) 569
AccB1I GGYRCC 2 cut(s) 569, 1515
AccB7I CCANNNNNTGG 2 cut(s) 1328, 1669
AccBSI CCGCTC 1 cut(s) 1794
AccII CGCG 1 cut(s) 534
AccIII TCCGGA 1 cut(s) 937
AciI CCGC 9 cut(s) 1182, 1206, 1229, 1433, 1546, 1646, 1688, 1691, 1792
AclWI GGATC 5 cut(s) 34, 822, 1481, 1502, 1617
AcsI RAATTY 3 cut(s) 410, 1635, 1723
AcuI CTGAAG 3 cut(s) 42, 1442, 1464
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 5 cut(s) 571, 625, 700, 800, 884
AfiI CCNNNNNNNGG 4 cut(s) 564, 1244, 1328, 1669
AgeI ACCGGT 1 cut(s) 453
AgsI TTSAA 6 cut(s) 131, 659, 795, 1030, 1747, 1813
AjiI CACGTC 1 cut(s) 1570
AjnI CCWGG 4 cut(s) 42, 342, 563, 572
AjuI GAANNNNNNNTTGG 2 cut(s) 1493, 1525
AluBI AGCT 4 cut(s) 288, 1258, 1306, 1552
AluI AGCT 4 cut(s) 288, 1258, 1306, 1552
Alw21I GWGCWC 2 cut(s) 1575, 1822
Alw26I GTCTC 4 cut(s) 476, 768, 1239, 1433
AlwI GGATC 5 cut(s) 34, 822, 1481, 1502, 1617
Aor13HI TCCGGA 1 cut(s) 937
AoxI GGCC 2 cut(s) 340, 1225
ApeKI GCWGC 1 cut(s) 78
ApoI RAATTY 3 cut(s) 410, 1635, 1723
AsiGI ACCGGT 1 cut(s) 453
Asp700I GAANNNNTTC 2 cut(s) 738, 1842
Asp718I GGTACC 1 cut(s) 569
AspLEI GCGC 2 cut(s) 83, 1291
AspS9I GGNCC 8 cut(s) 555, 932, 1200, 1226, 1252, 1319, 1561, 1623
AsuC2I CCSGG 2 cut(s) 1246, 1565
AsuHPI GGTGA 3 cut(s) 58, 506, 883
AsuII TTCGAA 1 cut(s) 248
AvaII GGWCC 7 cut(s) 555, 932, 1200, 1252, 1319, 1561, 1623
AxyI CCTNAGG 1 cut(s) 1044
BaeGI GKGCMC 1 cut(s) 1518
BanI GGYRCC 2 cut(s) 569, 1515
BbsI GAAGAC 1 cut(s) 1744
Bbv12I GWGCWC 2 cut(s) 1575, 1822
BbvI GCAGC 1 cut(s) 90
BccI CCATC 5 cut(s) 679, 993, 1223, 1264, 1552
BceAI ACGGC 6 cut(s) 68, 425, 1169, 1193, 1216, 1492
BciT130I CCWGG 4 cut(s) 44, 344, 565, 574
BcnI CCSGG 2 cut(s) 1246, 1565
BcoDI GTCTC 4 cut(s) 476, 768, 1239, 1433
BfaI CTAG 5 cut(s) 426, 432, 929, 1259, 1830
BfoI RGCGCY 2 cut(s) 84, 1292
BfuAI ACCTGC 1 cut(s) 1265
BglI GCCNNNNNGGC 1 cut(s) 1513
BisI GCNGC 3 cut(s) 79, 1182, 1689
BlsI GCNGC 3 cut(s) 80, 1183, 1690
Bme1390I CCNGG 6 cut(s) 44, 344, 565, 574, 1246, 1565
Bme18I GGWCC 7 cut(s) 555, 932, 1200, 1252, 1319, 1561, 1623
BmgBI CACGTC 1 cut(s) 1570
BmgT120I GGNCC 8 cut(s) 555, 932, 1200, 1226, 1252, 1319, 1561, 1623
BmiI GGNNCC 5 cut(s) 176, 525, 571, 1202, 1517
BmrFI CCNGG 6 cut(s) 44, 344, 565, 574, 1246, 1565
BmrI ACTGGG 2 cut(s) 661, 1791
BmsI GCATC 4 cut(s) 65, 236, 1633, 1718
BmuI ACTGGG 2 cut(s) 661, 1791
BoxI GACNNNNGTC 1 cut(s) 1628
BpiI GAAGAC 1 cut(s) 1744
Bpu10I CCTNAGC 1 cut(s) 559
Bpu14I TTCGAA 1 cut(s) 248
BpuMI CCSGG 2 cut(s) 1246, 1565
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 7 cut(s) 564, 760, 802, 1322, 1337, 1449, 1490
BsaWI WCCGGW 2 cut(s) 453, 937
Bsc4I CCNNNNNNNGG 4 cut(s) 564, 1244, 1328, 1669
Bse118I RCCGGY 2 cut(s) 158, 453
Bse1I ACTGG 2 cut(s) 656, 1786
Bse21I CCTNAGG 1 cut(s) 1044
BseAI TCCGGA 1 cut(s) 937
BseBI CCWGG 4 cut(s) 44, 344, 565, 574
BseDI CCNNGG 7 cut(s) 564, 760, 802, 1322, 1337, 1449, 1490
BseGI GGATG 2 cut(s) 1432, 1563
BseLI CCNNNNNNNGG 4 cut(s) 564, 1244, 1328, 1669
BseMII CTCAG 1 cut(s) 283
BseNI ACTGG 2 cut(s) 656, 1786
BseRI GAGGAG 2 cut(s) 167, 1693
BseSI GKGCMC 1 cut(s) 1518
BseXI GCAGC 1 cut(s) 90
BsgI GTGCAG 1 cut(s) 1495
Bsh1236I CGCG 1 cut(s) 534
Bsh1285I CGRYCG 1 cut(s) 1242
BshFI GGCC 2 cut(s) 342, 1227
BshNI GGYRCC 2 cut(s) 569, 1515
BshTI ACCGGT 1 cut(s) 453
BsiEI CGRYCG 1 cut(s) 1242
BsiHKAI GWGCWC 2 cut(s) 1575, 1822
BsiSI CCGG 6 cut(s) 159, 454, 938, 1198, 1245, 1564
BslFI GGGAC 2 cut(s) 1580, 1769
BslI CCNNNNNNNGG 4 cut(s) 564, 1244, 1328, 1669
BsmAI GTCTC 4 cut(s) 476, 768, 1239, 1433
BsmBI CGTCTC 1 cut(s) 1239
BsmFI GGGAC 2 cut(s) 1580, 1769
BsnI GGCC 2 cut(s) 342, 1227
Bsp119I TTCGAA 1 cut(s) 248
Bsp1286I GDGCHC 3 cut(s) 1518, 1575, 1822
Bsp13I TCCGGA 1 cut(s) 937
Bsp1407I TGTACA 1 cut(s) 698
Bsp143I GATC 9 cut(s) 39, 315, 529, 619, 814, 1239, 1486, 1494, 1609
Bsp19I CCATGG 3 cut(s) 802, 1322, 1337
Bsp68I TCGCGA 1 cut(s) 534
BspACI CCGC 9 cut(s) 1182, 1206, 1229, 1433, 1546, 1646, 1688, 1691, 1792
BspANI GGCC 2 cut(s) 342, 1227
BspCNI CTCAG 1 cut(s) 282
BspEI TCCGGA 1 cut(s) 937
BspFNI CGCG 1 cut(s) 534
BspHI TCATGA 2 cut(s) 1497, 1612
BspLI GGNNCC 5 cut(s) 176, 525, 571, 1202, 1517
BspMI ACCTGC 1 cut(s) 1265
BspPI GGATC 5 cut(s) 34, 822, 1481, 1502, 1617
BspT104I TTCGAA 1 cut(s) 248
BspT107I GGYRCC 2 cut(s) 569, 1515
BsrBI CCGCTC 1 cut(s) 1794
BsrFI RCCGGY 2 cut(s) 158, 453
BsrGI TGTACA 1 cut(s) 698
BsrI ACTGG 2 cut(s) 656, 1786
BssAI RCCGGY 2 cut(s) 158, 453
BssECI CCNNGG 7 cut(s) 564, 760, 802, 1322, 1337, 1449, 1490
BssMI GATC 9 cut(s) 39, 315, 529, 619, 814, 1239, 1486, 1494, 1609
BssNI GRCGYC 1 cut(s) 66
BssT1I CCWWGG 5 cut(s) 760, 802, 1322, 1337, 1449
Bst2UI CCWGG 4 cut(s) 44, 344, 565, 574
Bst4CI ACNGT 9 cut(s) 641, 698, 703, 887, 1056, 1296, 1418, 1473, 1743
Bst6I CTCTTC 2 cut(s) 572, 1808
BstACI GRCGYC 1 cut(s) 66
BstAUI TGTACA 1 cut(s) 698
BstBI TTCGAA 1 cut(s) 248
BstC8I GCNNGC 5 cut(s) 160, 828, 1229, 1544, 1593
BstDEI CTNAG 4 cut(s) 269, 559, 584, 1044
BstDSI CCRYGG 4 cut(s) 802, 1322, 1337, 1490
BstENI CCTNNNNNAGG 1 cut(s) 562
BstF5I GGATG 2 cut(s) 1432, 1563
BstFNI CGCG 1 cut(s) 534
BstH2I RGCGCY 2 cut(s) 84, 1292
BstHHI GCGC 2 cut(s) 83, 1291
BstKTI GATC 9 cut(s) 42, 318, 532, 622, 817, 1242, 1489, 1497, 1612
BstMAI GTCTC 4 cut(s) 476, 768, 1239, 1433
BstMBI GATC 9 cut(s) 39, 315, 529, 619, 814, 1239, 1486, 1494, 1609
BstMCI CGRYCG 1 cut(s) 1242
BstMWI GCNNNNNNNGC 4 cut(s) 87, 1513, 1543, 1597
BstNI CCWGG 4 cut(s) 44, 344, 565, 574
BstPAI GACNNNNGTC 1 cut(s) 1628
BstSCI CCNGG 6 cut(s) 42, 342, 563, 572, 1244, 1563
BstSLI GKGCMC 1 cut(s) 1518
BstUI CGCG 1 cut(s) 534
BstV1I GCAGC 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 1744
BstX2I RGATCY 1 cut(s) 39
BstXI CCANNNNNNTGG 1 cut(s) 809
BstYI RGATCY 1 cut(s) 39
Bsu36I CCTNAGG 1 cut(s) 1044
BsuRI GGCC 2 cut(s) 342, 1227
BtgI CCRYGG 4 cut(s) 802, 1322, 1337, 1490
BtrI CACGTC 1 cut(s) 1570
BtsCI GGATG 2 cut(s) 1432, 1563
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 4 cut(s) 153, 649, 1292, 1469
BtuMI TCGCGA 1 cut(s) 534
BveI ACCTGC 1 cut(s) 1265
Cac8I GCNNGC 5 cut(s) 160, 828, 1229, 1544, 1593
CciI TCATGA 2 cut(s) 1497, 1612
CfoI GCGC 2 cut(s) 83, 1291
Cfr10I RCCGGY 2 cut(s) 158, 453
Cfr13I GGNCC 8 cut(s) 555, 932, 1200, 1226, 1252, 1319, 1561, 1623
CseI GACGC 1 cut(s) 1766
Csp6I GTAC 5 cut(s) 570, 624, 699, 799, 883
CspAI ACCGGT 1 cut(s) 453
CspCI CAANNNNNGTGG 2 cut(s) 1281, 1316
CviQI GTAC 5 cut(s) 570, 624, 699, 799, 883
DdeI CTNAG 4 cut(s) 269, 559, 584, 1044
DpnI GATC 9 cut(s) 41, 317, 531, 621, 816, 1241, 1488, 1496, 1611
DpnII GATC 9 cut(s) 39, 315, 529, 619, 814, 1239, 1486, 1494, 1609
Eam1104I CTCTTC 2 cut(s) 572, 1808
EarI CTCTTC 2 cut(s) 572, 1808
EciI GGCGGA 1 cut(s) 1448
Eco130I CCWWGG 5 cut(s) 760, 802, 1322, 1337, 1449
Eco147I AGGCCT 1 cut(s) 342
Eco32I GATATC 2 cut(s) 28, 1525
Eco47I GGWCC 7 cut(s) 555, 932, 1200, 1252, 1319, 1561, 1623
Eco57I CTGAAG 3 cut(s) 42, 1442, 1464
Eco81I CCTNAGG 1 cut(s) 1044
EcoNI CCTNNNNNAGG 1 cut(s) 562
EcoO109I RGGNCCY 1 cut(s) 932
EcoRII CCWGG 4 cut(s) 42, 342, 563, 572
EcoRV GATATC 2 cut(s) 28, 1525
EcoT14I CCWWGG 5 cut(s) 760, 802, 1322, 1337, 1449
ErhI CCWWGG 5 cut(s) 760, 802, 1322, 1337, 1449
Esp3I CGTCTC 1 cut(s) 1239
FalI AAGNNNNNCTT 1 cut(s) 1827
FaqI GGGAC 2 cut(s) 1580, 1769
FauI CCCGC 3 cut(s) 1213, 1236, 1684
Fnu4HI GCNGC 3 cut(s) 79, 1182, 1689
FokI GGATG 2 cut(s) 1439, 1570
Fsp4HI GCNGC 3 cut(s) 79, 1182, 1689
FspBI CTAG 5 cut(s) 426, 432, 929, 1259, 1830
GlaI GCGC 2 cut(s) 82, 1290
GluI GCNGC 3 cut(s) 79, 1182, 1689
HaeII RGCGCY 2 cut(s) 84, 1292
HaeIII GGCC 2 cut(s) 342, 1227
HapII CCGG 6 cut(s) 159, 454, 938, 1198, 1245, 1564
HgaI GACGC 1 cut(s) 1766
HhaI GCGC 2 cut(s) 83, 1291
Hin1I GRCGYC 1 cut(s) 66
Hin6I GCGC 2 cut(s) 81, 1289
HinP1I GCGC 2 cut(s) 81, 1289
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HpaII CCGG 6 cut(s) 159, 454, 938, 1198, 1245, 1564
HphI GGTGA 3 cut(s) 58, 506, 883
Hpy166II GTNNAC 4 cut(s) 637, 1020, 1319, 1414
Hpy188I TCNGA 7 cut(s) 74, 320, 998, 1239, 1422, 1706, 1722
Hpy8I GTNNAC 4 cut(s) 637, 1020, 1319, 1414
Hpy99I CGWCG 3 cut(s) 167, 1164, 1223
HpyAV CCTTC 8 cut(s) 133, 191, 408, 670, 1127, 1217, 1243, 1417
HpyCH4III ACNGT 9 cut(s) 641, 698, 703, 887, 1056, 1296, 1418, 1473, 1743
HpyCH4IV ACGT 3 cut(s) 66, 165, 1569
HpyCH4V TGCA 7 cut(s) 78, 90, 211, 227, 771, 1458, 1476
HpyF10VI GCNNNNNNNGC 4 cut(s) 87, 1513, 1543, 1597
HpyF3I CTNAG 4 cut(s) 269, 559, 584, 1044
HpySE526I ACGT 3 cut(s) 66, 165, 1569
Hsp92I GRCGYC 1 cut(s) 66
HspAI GCGC 2 cut(s) 81, 1289
Kpn2I TCCGGA 1 cut(s) 937
KpnI GGTACC 1 cut(s) 573
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
Kzo9I GATC 9 cut(s) 39, 315, 529, 619, 814, 1239, 1486, 1494, 1609
LmnI GCTCC 3 cut(s) 180, 1303, 1578
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 4 cut(s) 65, 236, 1633, 1718
MaeI CTAG 5 cut(s) 426, 432, 929, 1259, 1830
MaeII ACGT 3 cut(s) 66, 165, 1569
MaeIII GTNAC 1 cut(s) 326
MalI GATC 9 cut(s) 41, 317, 531, 621, 816, 1241, 1488, 1496, 1611
MbiI CCGCTC 1 cut(s) 1794
MboI GATC 9 cut(s) 39, 315, 529, 619, 814, 1239, 1486, 1494, 1609
MflI RGATCY 1 cut(s) 39
MhlI GDGCHC 3 cut(s) 1518, 1575, 1822
MlyI GAGTC 2 cut(s) 327, 589
MmeI TCCRAC 3 cut(s) 1281, 1309, 1683
MroI TCCGGA 1 cut(s) 937
MroNI GCCGGC 1 cut(s) 158
MroXI GAANNNNTTC 2 cut(s) 738, 1842
MseI TTAA 1 cut(s) 1407
MslI CAYNNNNRTG 1 cut(s) 807
MspI CCGG 6 cut(s) 159, 454, 938, 1198, 1245, 1564
MspR9I CCNGG 6 cut(s) 44, 344, 565, 574, 1246, 1565
MvaI CCWGG 4 cut(s) 44, 344, 565, 574
MvnI CGCG 1 cut(s) 534
MwoI GCNNNNNNNGC 4 cut(s) 87, 1513, 1543, 1597
NaeI GCCGGC 1 cut(s) 160
NciI CCSGG 2 cut(s) 1246, 1565
NcoI CCATGG 3 cut(s) 802, 1322, 1337
NdeII GATC 9 cut(s) 39, 315, 529, 619, 814, 1239, 1486, 1494, 1609
NgoMIV GCCGGC 1 cut(s) 158
NlaIV GGNNCC 5 cut(s) 176, 525, 571, 1202, 1517
NruI TCGCGA 1 cut(s) 534
NspV TTCGAA 1 cut(s) 248
PagI TCATGA 2 cut(s) 1497, 1612
PaqCI CACCTGC 1 cut(s) 1265
PceI AGGCCT 1 cut(s) 342
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PdiI GCCGGC 1 cut(s) 160
PdmI GAANNNNTTC 2 cut(s) 738, 1842
PfeI GAWTC 9 cut(s) 394, 482, 734, 754, 841, 896, 1100, 1393, 1717
PflMI CCANNNNNTGG 2 cut(s) 1328, 1669
PinAI ACCGGT 1 cut(s) 453
PkrI GCNGC 3 cut(s) 80, 1183, 1690
Ple19I CGATCG 1 cut(s) 1242
PleI GAGTC 2 cut(s) 327, 588
PpsI GAGTC 2 cut(s) 327, 588
PpuMI RGGWCCY 1 cut(s) 932
PshAI GACNNNNGTC 1 cut(s) 1628
PsiI TTATAA 1 cut(s) 501
Psp5II RGGWCCY 1 cut(s) 932
Psp6I CCWGG 4 cut(s) 42, 342, 563, 572
PspGI CCWGG 4 cut(s) 42, 342, 563, 572
PspN4I GGNNCC 5 cut(s) 176, 525, 571, 1202, 1517
PspPI GGNCC 8 cut(s) 555, 932, 1200, 1226, 1252, 1319, 1561, 1623
PspPPI RGGWCCY 1 cut(s) 932
PsuI RGATCY 1 cut(s) 39
PvuI CGATCG 1 cut(s) 1242
RruI TCGCGA 1 cut(s) 534
RsaI GTAC 5 cut(s) 571, 625, 700, 800, 884
RsaNI GTAC 5 cut(s) 570, 624, 699, 799, 883
RseI CAYNNNNRTG 1 cut(s) 807
SaqAI TTAA 1 cut(s) 1407
SatI GCNGC 3 cut(s) 79, 1182, 1689
Sau3AI GATC 9 cut(s) 39, 315, 529, 619, 814, 1239, 1486, 1494, 1609
Sau96I GGNCC 8 cut(s) 555, 932, 1200, 1226, 1252, 1319, 1561, 1623
SchI GAGTC 2 cut(s) 327, 589
ScrFI CCNGG 6 cut(s) 44, 344, 565, 574, 1246, 1565
SduI GDGCHC 3 cut(s) 1518, 1575, 1822
SfaNI GCATC 4 cut(s) 65, 236, 1633, 1718
SfuI TTCGAA 1 cut(s) 248
SinI GGWCC 7 cut(s) 555, 932, 1200, 1252, 1319, 1561, 1623
SmiMI CAYNNNNRTG 1 cut(s) 807
SseBI AGGCCT 1 cut(s) 342
SsiI CCGC 9 cut(s) 1182, 1206, 1229, 1433, 1546, 1646, 1688, 1691, 1792
SspMI CTAG 5 cut(s) 426, 432, 929, 1259, 1830
StuI AGGCCT 1 cut(s) 342
StyD4I CCNGG 6 cut(s) 42, 342, 563, 572, 1244, 1563
StyI CCWWGG 5 cut(s) 760, 802, 1322, 1337, 1449
TaaI ACNGT 9 cut(s) 641, 698, 703, 887, 1056, 1296, 1418, 1473, 1743
TaiI ACGT 3 cut(s) 69, 168, 1572
TaqI TCGA 7 cut(s) 170, 248, 750, 915, 957, 1006, 1221
TaqII GACCGA 1 cut(s) 227
TatI WGTACW 1 cut(s) 698
TauI GCSGC 2 cut(s) 1184, 1691
TfiI GAWTC 9 cut(s) 394, 482, 734, 754, 841, 896, 1100, 1393, 1717
Tru1I TTAA 1 cut(s) 1407
Tru9I TTAA 1 cut(s) 1407
TscAI CASTG 4 cut(s) 160, 656, 1299, 1476
TseI GCWGC 1 cut(s) 78
TspGWI ACGGA 3 cut(s) 345, 697, 1479
TspRI CASTG 4 cut(s) 160, 656, 1299, 1476
Van91I CCANNNNNTGG 2 cut(s) 1328, 1669
VpaK11BI GGWCC 7 cut(s) 555, 932, 1200, 1252, 1319, 1561, 1623
XagI CCTNNNNNAGG 1 cut(s) 562
XapI RAATTY 3 cut(s) 410, 1635, 1723
XcmI CCANNNNNNNNNTGG 2 cut(s) 1603, 1666
XmnI GAANNNNTTC 2 cut(s) 738, 1842
XspI CTAG 5 cut(s) 426, 432, 929, 1259, 1830
ZraI GACGTC 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.