Rh5DG197600

F-box kelch-repeat protein At3g23880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000068
Physical Location & Seq
Reverse (-)
22013944 .. 22017784
3841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG197600.1

Sequence Viewer

Length: 342 bp
ATGTTGCCGAAGAATTTCATATTGGATCTGTCATTGGTCTTGCGATTGTCTGTTTCCGGAGACCAAAAATCCATTGCTCTGTTTGCAAGGTGCAAGAGTGATACAGATTGTTTCCTTGATATATGGGAAGGATGCAACTTCTTACTGAGGGAAAGAATACATAAGGTCGGAAATAGGGGAAATGATTCTCAAGACTCTGCTGAGTTTTCTTTTATCATTAGGGTTTTGCGCCGGCGCCCTAGTTATACAGAAGAGGAATTCACCGAGATAAGGGTATTGAAATTTGAAGCAATGAGAGACTATTTCCCTTACAAAGCAGTGATAAACCTCCACCAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

113

Amino Acids

13.28

Weight (kDa)

7.73

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 234
AccIII TCCGGA 1 cut(s) 56
AclWI GGATC 1 cut(s) 33
AcsI RAATTY 3 cut(s) 13, 257, 281
AcyI GRCGYC 1 cut(s) 235
AfiI CCNNNNNNNGG 1 cut(s) 270
AgsI TTSAA 2 cut(s) 280, 287
AjuI GAANNNNNNNTTGG 1 cut(s) 37
Alw26I GTCTC 2 cut(s) 54, 291
AlwI GGATC 1 cut(s) 33
Aor13HI TCCGGA 1 cut(s) 56
ApoI RAATTY 3 cut(s) 13, 257, 281
Asp700I GAANNNNTTC 2 cut(s) 14, 184
AspLEI GCGC 2 cut(s) 231, 237
AsuHPI GGTGA 1 cut(s) 253
BanI GGYRCC 1 cut(s) 234
BcoDI GTCTC 2 cut(s) 54, 291
BfaI CTAG 1 cut(s) 240
BfoI RGCGCY 1 cut(s) 238
BmiI GGNNCC 1 cut(s) 236
BmsI GCATC 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 174
BsaHI GRCGYC 1 cut(s) 235
BsaI GGTCTC 1 cut(s) 54
BsaWI WCCGGW 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 270
Bse118I RCCGGY 1 cut(s) 231
Bse1I ACTGG 1 cut(s) 334
Bse3DI GCAATG 2 cut(s) 72, 297
BseAI TCCGGA 1 cut(s) 56
BseGI GGATG 1 cut(s) 137
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMI GCAATG 2 cut(s) 72, 297
BseMII CTCAG 2 cut(s) 137, 192
BseNI ACTGG 1 cut(s) 334
BshNI GGYRCC 1 cut(s) 234
BsiSI CCGG 2 cut(s) 57, 232
BslI CCNNNNNNNGG 1 cut(s) 270
BsmAI GTCTC 2 cut(s) 54, 291
Bso31I GGTCTC 1 cut(s) 54
Bsp13I TCCGGA 1 cut(s) 56
Bsp143I GATC 1 cut(s) 25
BspCNI CTCAG 2 cut(s) 138, 193
BspEI TCCGGA 1 cut(s) 56
BspLI GGNNCC 1 cut(s) 236
BspPI GGATC 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 234
BspTNI GGTCTC 1 cut(s) 54
BsrDI GCAATG 2 cut(s) 72, 297
BsrFI RCCGGY 1 cut(s) 231
BsrI ACTGG 1 cut(s) 334
BssAI RCCGGY 1 cut(s) 231
BssMI GATC 1 cut(s) 25
BssNI GRCGYC 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 246
BstACI GRCGYC 1 cut(s) 235
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 2 cut(s) 146, 201
BstF5I GGATG 1 cut(s) 137
BstH2I RGCGCY 1 cut(s) 238
BstHHI GCGC 2 cut(s) 231, 237
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 2 cut(s) 54, 291
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BtsCI GGATG 1 cut(s) 137
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 233
CfoI GCGC 2 cut(s) 231, 237
Cfr10I RCCGGY 1 cut(s) 231
DdeI CTNAG 2 cut(s) 146, 201
DinI GGCGCC 1 cut(s) 236
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
Eco31I GGTCTC 1 cut(s) 54
EcoRI GAATTC 1 cut(s) 257
EgeI GGCGCC 1 cut(s) 236
EheI GGCGCC 1 cut(s) 236
FaiI YATR 6 cut(s) 20, 122, 124, 162, 246, 340
FokI GGATG 1 cut(s) 144
FspBI CTAG 1 cut(s) 240
GlaI GCGC 2 cut(s) 230, 236
HaeII RGCGCY 1 cut(s) 238
HapII CCGG 2 cut(s) 57, 232
HhaI GCGC 2 cut(s) 231, 237
Hin1I GRCGYC 1 cut(s) 235
Hin6I GCGC 2 cut(s) 229, 235
HinP1I GCGC 2 cut(s) 229, 235
HinfI GANTC 2 cut(s) 185, 194
HpaII CCGG 2 cut(s) 57, 232
HphI GGTGA 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 170
Hpy188III TCNNGA 2 cut(s) 57, 191
HpyAV CCTTC 1 cut(s) 122
HpyCH4V TGCA 3 cut(s) 86, 93, 135
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 2 cut(s) 146, 201
Hsp92I GRCGYC 1 cut(s) 235
HspAI GCGC 2 cut(s) 229, 235
KasI GGCGCC 1 cut(s) 234
Kpn2I TCCGGA 1 cut(s) 56
KroI GCCGGC 1 cut(s) 231
KroNI GCCGGC 1 cut(s) 233
Kzo9I GATC 1 cut(s) 25
LpnPI CCDG 2 cut(s) 70, 245
LweI GCATC 1 cut(s) 122
MaeI CTAG 1 cut(s) 240
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 2 cut(s) 22, 263
MflI RGATCY 1 cut(s) 25
MluCI AATT 3 cut(s) 13, 257, 281
Mly113I GGCGCC 1 cut(s) 235
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 3 cut(s) 141, 247, 338
MreI CGCCGGCG 1 cut(s) 231
MroI TCCGGA 1 cut(s) 56
MroNI GCCGGC 1 cut(s) 231
MroXI GAANNNNTTC 2 cut(s) 14, 184
MspI CCGG 2 cut(s) 57, 232
MwoI GCNNNNNNNGC 1 cut(s) 83
NaeI GCCGGC 1 cut(s) 233
NarI GGCGCC 1 cut(s) 235
NdeII GATC 1 cut(s) 25
NgoMIV GCCGGC 1 cut(s) 231
NlaIV GGNNCC 1 cut(s) 236
PdiI GCCGGC 1 cut(s) 233
PdmI GAANNNNTTC 2 cut(s) 14, 184
PfeI GAWTC 1 cut(s) 185
PleI GAGTC 1 cut(s) 188
PluTI GGCGCC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 188
PspN4I GGNNCC 1 cut(s) 236
PsuI RGATCY 1 cut(s) 25
Sau3AI GATC 1 cut(s) 25
SchI GAGTC 1 cut(s) 188
SetI ASST 3 cut(s) 92, 168, 330
SfaNI GCATC 1 cut(s) 122
SfoI GGCGCC 1 cut(s) 236
SgeI CNNG 9 cut(s) 52, 69, 99, 106, 128, 203, 244, 252, 277
SgrAI CRCCGGYG 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 189
SmoI CTYRAG 1 cut(s) 189
Sse9I AATT 3 cut(s) 13, 257, 281
SspDI GGCGCC 1 cut(s) 234
SspMI CTAG 1 cut(s) 240
TasI AATT 3 cut(s) 13, 257, 281
TfiI GAWTC 1 cut(s) 185
TscAI CASTG 1 cut(s) 324
TspDTI ATGAA 1 cut(s) 7
TspRI CASTG 1 cut(s) 324
XapI RAATTY 3 cut(s) 13, 257, 281
XmnI GAANNNNTTC 2 cut(s) 14, 184
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.