Rroxscaffold_1G00049110

F-box kelch-repeat protein At3g23880-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
69300818 .. 69301875
1058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00049110.1

Sequence Viewer

Length: 678 bp
ATGACCAAAATGCCACTCACCTCCTTCTCCTCCACGCTGTTTTCAGTCAAGGCGTTTCCTACCCTCTCGGAGGCATGTCCAACTTTAGCTCAGGTTTATTCACTAGCCAAGGGATCTTGGGGCCGGCTTCGTTCTGATCTTCCTCCTTGTGGAATGCTTCCTGACTTGGGCCAGGCTTTTGTTAATGGGGCACTTCACTGGCTGGCTATTCTTTGGGAAGGTGATGATGTTATCTTTTTTGTTTCGGCATTTGATGTGGGCAGTGAGTCATTTCGGGAGATAATGTTGCCCAAGACATTCAAAATGGAGGAGTCATTGGACTTGAGGTTGTCTGTTTCCGGAGATGGACAATCCATTGGTCTGTTCGTGAGGTTTAAGGATGAGTCTGATTGTTTTCTTGATATATGGGTGATGAAGGAGTATTGCATTGAGAAGTCGTGGACCAAATTGGTAATTCTCAGCCCACAAGGTCCGCAAAGAGGTTTACCCAATGCATTGTGTTTTAGGAGGAATGGTGAAGTGGTGTTGGTACTTGAAGATAGCCGTGAATTGGTTTCACTTGAACTTGTGAGCAAACAGTTTAAAGCTCTTGGGATATCTGGAGGTCAGGTTTGCTCTGTCGACTTGTATGAAGAGAGCCTTGTCTTGCTCGATAAGAAAGATGCAGTTTCTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

225

Amino Acids

25.02

Weight (kDa)

4.86

Isoelectric Point (pI)

44.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 29 - 183 1.3e-11 F-box associated beta propeller domain
FBA_3 PF08268 30 - 180 1.2e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 621
AccIII TCCGGA 1 cut(s) 338
AciI CCGC 1 cut(s) 473
AclWI GGATC 1 cut(s) 121
AfaI GTAC 1 cut(s) 531
AfiI CCNNNNNNNGG 5 cut(s) 70, 149, 167, 479, 550
AgsI TTSAA 3 cut(s) 301, 536, 563
AjnI CCWGG 1 cut(s) 171
AluBI AGCT 2 cut(s) 89, 587
AluI AGCT 2 cut(s) 89, 587
AlwI GGATC 1 cut(s) 121
Aor13HI TCCGGA 1 cut(s) 338
AoxI GGCC 2 cut(s) 121, 169
AspS9I GGNCC 4 cut(s) 121, 169, 441, 470
AsuHPI GGTGA 4 cut(s) 10, 233, 421, 527
AvaII GGWCC 2 cut(s) 441, 470
BaeGI GKGCMC 1 cut(s) 193
BccI CCATC 1 cut(s) 338
BceAI ACGGC 1 cut(s) 528
BciT130I CCWGG 1 cut(s) 173
BfaI CTAG 1 cut(s) 104
Bme1390I CCNGG 1 cut(s) 173
Bme18I GGWCC 2 cut(s) 441, 470
BmgT120I GGNCC 4 cut(s) 121, 169, 441, 470
BmiI GGNNCC 1 cut(s) 122
BmrFI CCNGG 1 cut(s) 173
BmsI GCATC 1 cut(s) 652
BpmI CTGGAG 1 cut(s) 621
Bpu10I CCTNAGC 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 343
BsaJI CCNNGG 1 cut(s) 108
BsaWI WCCGGW 1 cut(s) 338
BsaXI ACNNNNNCTCC 6 cut(s) 269, 299, 499, 529, 594, 624
Bsc4I CCNNNNNNNGG 5 cut(s) 70, 149, 167, 479, 550
Bse118I RCCGGY 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 203
BseAI TCCGGA 1 cut(s) 338
BseBI CCWGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 5 cut(s) 70, 149, 167, 479, 550
BseMII CTCAG 2 cut(s) 104, 472
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 2 cut(s) 19, 323
BseSI GKGCMC 1 cut(s) 193
BshFI GGCC 2 cut(s) 123, 171
BsiSI CCGG 2 cut(s) 124, 339
BslI CCNNNNNNNGG 5 cut(s) 70, 149, 167, 479, 550
BsmI GAATGC 1 cut(s) 159
BsnI GGCC 2 cut(s) 123, 171
Bsp1286I GDGCHC 1 cut(s) 193
Bsp13I TCCGGA 1 cut(s) 338
Bsp143I GATC 2 cut(s) 113, 136
BspACI CCGC 1 cut(s) 473
BspANI GGCC 2 cut(s) 123, 171
BspCNI CTCAG 2 cut(s) 103, 471
BspEI TCCGGA 1 cut(s) 338
BspLI GGNNCC 1 cut(s) 122
BspPI GGATC 1 cut(s) 121
BsrFI RCCGGY 1 cut(s) 123
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 123
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 2 cut(s) 113, 136
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 173
Bst4CI ACNGT 1 cut(s) 579
Bst6I CTCTTC 1 cut(s) 627
BstC8I GCNNGC 2 cut(s) 125, 204
BstDEI CTNAG 2 cut(s) 90, 458
BstENI CCTNNNNNAGG 1 cut(s) 68
BstF5I GGATG 1 cut(s) 385
BstKTI GATC 2 cut(s) 116, 139
BstMBI GATC 2 cut(s) 113, 136
BstNI CCWGG 1 cut(s) 173
BstNSI RCATGY 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 171
BstSLI GKGCMC 1 cut(s) 193
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BsuRI GGCC 2 cut(s) 123, 171
BtsCI GGATG 1 cut(s) 385
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 196, 268
Cac8I GCNNGC 2 cut(s) 125, 204
Cfr10I RCCGGY 1 cut(s) 123
Cfr13I GGNCC 4 cut(s) 121, 169, 441, 470
Csp6I GTAC 1 cut(s) 530
CviAII CATG 1 cut(s) 75
CviQI GTAC 1 cut(s) 530
DdeI CTNAG 2 cut(s) 90, 458
DpnI GATC 2 cut(s) 115, 138
DpnII GATC 2 cut(s) 113, 136
DraI TTTAAA 1 cut(s) 583
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
Eco130I CCWWGG 1 cut(s) 108
Eco32I GATATC 1 cut(s) 597
Eco47I GGWCC 2 cut(s) 441, 470
EcoNI CCTNNNNNAGG 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 171
EcoRV GATATC 1 cut(s) 597
EcoT14I CCWWGG 1 cut(s) 108
EcoT22I ATGCAT 1 cut(s) 496
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 1 cut(s) 78
FaiI YATR 4 cut(s) 76, 404, 406, 630
FalI AAGNNNNNCTT 2 cut(s) 624, 656
FatI CATG 1 cut(s) 74
FblI GTMKAC 1 cut(s) 621
FokI GGATG 1 cut(s) 392
FspBI CTAG 1 cut(s) 104
GsuI CTGGAG 1 cut(s) 621
HaeIII GGCC 2 cut(s) 123, 171
HapII CCGG 2 cut(s) 124, 339
Hin1II CATG 1 cut(s) 78
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HinfI GANTC 3 cut(s) 266, 311, 383
HpaII CCGG 2 cut(s) 124, 339
HphI GGTGA 4 cut(s) 10, 233, 421, 527
Hpy166II GTNNAC 3 cut(s) 441, 485, 622
Hpy188I TCNGA 3 cut(s) 70, 136, 388
Hpy188III TCNNGA 6 cut(s) 161, 275, 339, 367, 398, 600
Hpy8I GTNNAC 3 cut(s) 441, 485, 622
HpyAV CCTTC 3 cut(s) 34, 212, 409
HpyCH4III ACNGT 1 cut(s) 579
HpyCH4V TGCA 3 cut(s) 426, 494, 665
HpyF3I CTNAG 2 cut(s) 90, 458
Hsp92II CATG 1 cut(s) 78
Kpn2I TCCGGA 1 cut(s) 338
KroI GCCGGC 1 cut(s) 123
KroNI GCCGGC 1 cut(s) 125
Kzo9I GATC 2 cut(s) 113, 136
LweI GCATC 1 cut(s) 652
MaeI CTAG 1 cut(s) 104
MalI GATC 2 cut(s) 115, 138
MboI GATC 2 cut(s) 113, 136
MboII GAAGA 3 cut(s) 131, 548, 644
MflI RGATCY 1 cut(s) 113
MhlI GDGCHC 1 cut(s) 193
MluCI AATT 3 cut(s) 446, 453, 548
MlyI GAGTC 3 cut(s) 275, 320, 392
MmeI TCCRAC 1 cut(s) 104
Mph1103I ATGCAT 1 cut(s) 496
MroI TCCGGA 1 cut(s) 338
MroNI GCCGGC 1 cut(s) 123
MseI TTAA 3 cut(s) 183, 375, 582
MspI CCGG 2 cut(s) 124, 339
MspR9I CCNGG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 159
MvaI CCWGG 1 cut(s) 173
NaeI GCCGGC 1 cut(s) 125
NdeII GATC 2 cut(s) 113, 136
NgoMIV GCCGGC 1 cut(s) 123
NlaIII CATG 1 cut(s) 78
NlaIV GGNNCC 1 cut(s) 122
NsiI ATGCAT 1 cut(s) 496
NspI RCATGY 1 cut(s) 78
PctI GAATGC 1 cut(s) 159
PdiI GCCGGC 1 cut(s) 125
PleI GAGTC 3 cut(s) 274, 319, 391
PpsI GAGTC 3 cut(s) 274, 319, 391
Psp6I CCWGG 1 cut(s) 171
PspGI CCWGG 1 cut(s) 171
PspN4I GGNNCC 1 cut(s) 122
PspPI GGNCC 4 cut(s) 121, 169, 441, 470
PsuI RGATCY 1 cut(s) 113
RsaI GTAC 1 cut(s) 531
RsaNI GTAC 1 cut(s) 530
SalI GTCGAC 1 cut(s) 620
SaqAI TTAA 3 cut(s) 183, 375, 582
Sau3AI GATC 2 cut(s) 113, 136
Sau96I GGNCC 4 cut(s) 121, 169, 441, 470
SchI GAGTC 3 cut(s) 275, 320, 392
ScrFI CCNGG 1 cut(s) 173
SduI GDGCHC 1 cut(s) 193
SfaNI GCATC 1 cut(s) 652
SinI GGWCC 2 cut(s) 441, 470
SmlI CTYRAG 1 cut(s) 322
SmoI CTYRAG 1 cut(s) 322
Sse9I AATT 3 cut(s) 446, 453, 548
SsiI CCGC 1 cut(s) 473
SspMI CTAG 1 cut(s) 104
StyD4I CCNGG 1 cut(s) 171
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 579
TaqI TCGA 2 cut(s) 621, 651
TasI AATT 3 cut(s) 446, 453, 548
Tru1I TTAA 3 cut(s) 183, 375, 582
Tru9I TTAA 3 cut(s) 183, 375, 582
TscAI CASTG 2 cut(s) 203, 268
TspDTI ATGAA 2 cut(s) 428, 645
TspRI CASTG 2 cut(s) 203, 268
VpaK11BI GGWCC 2 cut(s) 441, 470
XagI CCTNNNNNAGG 1 cut(s) 68
XceI RCATGY 1 cut(s) 78
XmiI GTMKAC 1 cut(s) 621
XspI CTAG 1 cut(s) 104
Zsp2I ATGCAT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.