Rroxscaffold_2G00090440

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000068
Physical Location & Seq
Reverse (-)
12179067 .. 12180957
1891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00090440.1

Sequence Viewer

Length: 1068 bp
ATGAGCGCCCTCGAACCATATACATCGAGAACCCATCCGATAGCAAACTCAAGACATCAGCGCCACCGGAGCCAGCCCAGACAGCAGGGCGCCACCGGAGCCAGCCCAGACAGCAGGGCGCCACCGGATGAGCACGAATTTGCACTCGAAAAGGCCGGCTGTTATGATCCCGGGGATCGTAACACAACTTCTGACATTAAAGCAGTTTCTCCAATCTATGAAGGAAGAGAAATCAATGTGGATCAACAAAATTTCTATCCAGTTGGAACTTGCAACGGCCTCATTGGCCCGGTTTGTCATGATATTGAAAAACGAATTTCAATGTCAATAATATGGAATCCTTGTGTTAGAAAGTTTTTGGTTCTTCCTAGTCCAAGCTTTTCGCCCTACGAGGTTGCTTTTACCCTCTATGAATTAGGCTATGATTCACATAACAATGACATTAAGCTTGTGCAAATTGTGGTTCCAAAATTTCAAGACGACCAAACTCCATGTATCTTTCAAGATCTTAACGCTCCTGCAGACTTTAAACCTTTTCTTAATGATCTTAGAGCTGTGGAGATTAGTGGTGCTTTGCATTGGATTTGTGCGAAACTGTATACTGAGATCAATGAAAGCACGGTCGCTGTGACCTTTAACTTGTCTAGTGAATTATTTGGGAAGATGAAGATTCCTGAGGCTTTGAAAAAAGATTCAACGAAGAAATCTTGTTATAAGCTGAGGTACAGAGAATCCTTTGCTTTGTTGTCTCAGAGATCTCGGACTGAAAACTACTTAACTGATCTGTGGGTGATGAAAGAATATGGGGTGGCAGAATCATATGGGGTGGCAGAATCGTGGACTAAACCACTAACTATACACATACCGGATAGTTTGGGACACCTGAGAATTTATTTTAGATACAGTGGCCAAGTAGTGATTGGAACACTTTGGCAAGGAGTGGAATCACTGGACCCTAAGAGCAAGCAAGTTAAGAATATAGTAGATGATAGACTCATAATACCCTTCATGCATCCTCTCTTCGAGAGCCTTGTTTTACTTGACCGATCTGATGCTTTTTCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

355

Amino Acids

40.35

Weight (kDa)

6.22

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 79 - 291 4e-14 F-box associated beta propeller domain
FBA_3 PF08268 82 - 268 1.6e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 714
AccB1I GGYRCC 2 cut(s) 89, 118
AccI GTMKAC 1 cut(s) 599
AclWI GGATC 3 cut(s) 161, 183, 249
AcoI YGGCCR 1 cut(s) 907
AcsI RAATTY 5 cut(s) 137, 250, 315, 470, 888
AcyI GRCGYC 2 cut(s) 90, 119
AfaI GTAC 1 cut(s) 725
AgsI TTSAA 6 cut(s) 308, 321, 476, 503, 685, 696
AluBI AGCT 4 cut(s) 378, 448, 554, 718
AluI AGCT 4 cut(s) 378, 448, 554, 718
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 1 cut(s) 753
AlwI GGATC 3 cut(s) 161, 183, 249
Ama87I CYCGRG 1 cut(s) 170
AoxI GGCC 4 cut(s) 153, 277, 286, 907
ApoI RAATTY 5 cut(s) 137, 250, 315, 470, 888
AspLEI GCGC 4 cut(s) 8, 63, 92, 121
AspS9I GGNCC 2 cut(s) 287, 952
AsuC2I CCSGG 3 cut(s) 171, 172, 290
AsuHPI GGTGA 1 cut(s) 802
AvaI CYCGRG 1 cut(s) 170
AvaII GGWCC 1 cut(s) 952
AxyI CCTNAGG 1 cut(s) 675
BalI TGGCCA 1 cut(s) 909
BanI GGYRCC 2 cut(s) 89, 118
BarI GAAGNNNNNNTAC 2 cut(s) 172, 204
Bbv12I GWGCWC 1 cut(s) 135
BbvCI CCTCAGC 1 cut(s) 719
BccI CCATC 1 cut(s) 42
BceAI ACGGC 1 cut(s) 292
BcnI CCSGG 3 cut(s) 171, 172, 290
BcoDI GTCTC 1 cut(s) 753
BfaI CTAG 2 cut(s) 369, 645
BfmI CTRYAG 1 cut(s) 519
BfoI RGCGCY 4 cut(s) 9, 64, 93, 122
BglI GCCNNNNNGGC 1 cut(s) 285
BglII AGATCT 2 cut(s) 505, 755
Bme1390I CCNGG 3 cut(s) 171, 172, 290
Bme18I GGWCC 1 cut(s) 952
BmeT110I CYCGRG 1 cut(s) 170
BmgT120I GGNCC 2 cut(s) 287, 952
BmiI GGNNCC 6 cut(s) 71, 91, 100, 120, 465, 954
BmrFI CCNGG 3 cut(s) 171, 172, 290
BmsI GCATC 2 cut(s) 1021, 1042
Bpu10I CCTNAGC 1 cut(s) 719
BpuEI CTTGAG 1 cut(s) 34
BpuMI CCSGG 3 cut(s) 171, 172, 290
BsaHI GRCGYC 2 cut(s) 90, 119
BsaJI CCNNGG 2 cut(s) 170, 171
BsaWI WCCGGW 4 cut(s) 66, 95, 124, 865
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 2 cut(s) 260, 954
Bse21I CCTNAGG 1 cut(s) 675
BseDI CCNNGG 2 cut(s) 170, 171
BseGI GGATG 3 cut(s) 34, 133, 1012
BseMII CTCAG 5 cut(s) 594, 666, 710, 764, 875
BseNI ACTGG 2 cut(s) 260, 954
Bsh1285I CGRYCG 1 cut(s) 624
BshFI GGCC 4 cut(s) 155, 279, 288, 909
BshNI GGYRCC 2 cut(s) 89, 118
BsiEI CGRYCG 1 cut(s) 624
BsiHKAI GWGCWC 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 170
BsiSI CCGG 7 cut(s) 67, 96, 125, 156, 171, 290, 866
BslFI GGGAC 1 cut(s) 891
BsmAI GTCTC 1 cut(s) 753
BsmFI GGGAC 1 cut(s) 891
BsnI GGCC 4 cut(s) 155, 279, 288, 909
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 9 cut(s) 166, 175, 241, 505, 544, 606, 755, 781, 1046
BspANI GGCC 4 cut(s) 155, 279, 288, 909
BspCNI CTCAG 5 cut(s) 595, 667, 711, 763, 876
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 6 cut(s) 71, 91, 100, 120, 465, 954
BspMAI CTGCAG 1 cut(s) 523
BspPI GGATC 3 cut(s) 161, 183, 249
BspT107I GGYRCC 2 cut(s) 89, 118
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 2 cut(s) 260, 954
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 170, 171
BssMI GATC 9 cut(s) 166, 175, 241, 505, 544, 606, 755, 781, 1046
BssNAI GTATAC 1 cut(s) 600
BssNI GRCGYC 2 cut(s) 90, 119
Bst1107I GTATAC 1 cut(s) 600
Bst4CI ACNGT 3 cut(s) 597, 622, 905
Bst6I CTCTTC 2 cut(s) 220, 1025
BstACI GRCGYC 2 cut(s) 90, 119
BstC8I GCNNGC 4 cut(s) 74, 103, 157, 965
BstDEI CTNAG 7 cut(s) 548, 603, 675, 719, 750, 884, 957
BstF5I GGATG 3 cut(s) 34, 133, 1012
BstH2I RGCGCY 4 cut(s) 9, 64, 93, 122
BstHHI GCGC 4 cut(s) 8, 63, 92, 121
BstKTI GATC 9 cut(s) 169, 178, 244, 508, 547, 609, 758, 784, 1049
BstMAI GTCTC 1 cut(s) 753
BstMBI GATC 9 cut(s) 166, 175, 241, 505, 544, 606, 755, 781, 1046
BstMCI CGRYCG 1 cut(s) 624
BstMWI GCNNNNNNNGC 5 cut(s) 69, 82, 98, 111, 285
BstSCI CCNGG 3 cut(s) 169, 170, 288
BstSFI CTRYAG 1 cut(s) 519
BstX2I RGATCY 2 cut(s) 505, 755
BstYI RGATCY 2 cut(s) 505, 755
BstZ17I GTATAC 1 cut(s) 600
Bsu36I CCTNAGG 1 cut(s) 675
BsuRI GGCC 4 cut(s) 155, 279, 288, 909
BtsCI GGATG 3 cut(s) 34, 133, 1012
BtsIMutI CAGTG 2 cut(s) 910, 947
Cac8I GCNNGC 4 cut(s) 74, 103, 157, 965
CciI TCATGA 1 cut(s) 298
CfoI GCGC 4 cut(s) 8, 63, 92, 121
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 2 cut(s) 287, 952
Cfr9I CCCGGG 1 cut(s) 170
Csp6I GTAC 1 cut(s) 724
CviAII CATG 3 cut(s) 299, 492, 1009
CviQI GTAC 1 cut(s) 724
DdeI CTNAG 7 cut(s) 548, 603, 675, 719, 750, 884, 957
DinI GGCGCC 2 cut(s) 91, 120
DpnI GATC 9 cut(s) 168, 177, 243, 507, 546, 608, 757, 783, 1048
DpnII GATC 9 cut(s) 166, 175, 241, 505, 544, 606, 755, 781, 1046
DraI TTTAAA 1 cut(s) 529
EaeI YGGCCR 1 cut(s) 907
Eam1104I CTCTTC 2 cut(s) 220, 1025
EarI CTCTTC 2 cut(s) 220, 1025
Eco47I GGWCC 1 cut(s) 952
Eco81I CCTNAGG 1 cut(s) 675
Eco88I CYCGRG 1 cut(s) 170
EcoT22I ATGCAT 1 cut(s) 1014
EgeI GGCGCC 2 cut(s) 91, 120
EheI GGCGCC 2 cut(s) 91, 120
FaeI CATG 3 cut(s) 302, 495, 1012
FaqI GGGAC 1 cut(s) 891
FatI CATG 3 cut(s) 298, 491, 1008
FauNDI CATATG 1 cut(s) 820
FblI GTMKAC 1 cut(s) 599
FokI GGATG 3 cut(s) 21, 140, 999
FspBI CTAG 2 cut(s) 369, 645
GlaI GCGC 4 cut(s) 7, 62, 91, 120
HaeII RGCGCY 4 cut(s) 9, 64, 93, 122
HaeIII GGCC 4 cut(s) 155, 279, 288, 909
HapII CCGG 7 cut(s) 67, 96, 125, 156, 171, 290, 866
HhaI GCGC 4 cut(s) 8, 63, 92, 121
Hin1I GRCGYC 2 cut(s) 90, 119
Hin1II CATG 3 cut(s) 302, 495, 1012
Hin6I GCGC 4 cut(s) 6, 61, 90, 119
HinP1I GCGC 4 cut(s) 6, 61, 90, 119
HindIII AAGCTT 2 cut(s) 376, 446
HinfI GANTC 9 cut(s) 337, 425, 670, 692, 731, 815, 833, 944, 993
HpaII CCGG 7 cut(s) 67, 96, 125, 156, 171, 290, 866
HphI GGTGA 1 cut(s) 802
Hpy166II GTNNAC 2 cut(s) 600, 840
Hpy188I TCNGA 5 cut(s) 39, 193, 753, 762, 1051
Hpy188III TCNNGA 7 cut(s) 27, 51, 299, 476, 503, 674, 1024
Hpy8I GTNNAC 2 cut(s) 600, 840
HpyAV CCTTC 2 cut(s) 215, 1015
HpyCH4III ACNGT 3 cut(s) 597, 622, 905
HpyCH4V TGCA 6 cut(s) 143, 273, 454, 521, 577, 1012
HpyF10VI GCNNNNNNNGC 5 cut(s) 69, 82, 98, 111, 285
HpyF3I CTNAG 7 cut(s) 548, 603, 675, 719, 750, 884, 957
Hsp92I GRCGYC 2 cut(s) 90, 119
Hsp92II CATG 3 cut(s) 302, 495, 1012
HspAI GCGC 4 cut(s) 6, 61, 90, 119
KasI GGCGCC 2 cut(s) 89, 118
KroI GCCGGC 1 cut(s) 155
KroNI GCCGGC 1 cut(s) 157
Kzo9I GATC 9 cut(s) 166, 175, 241, 505, 544, 606, 755, 781, 1046
LmnI GCTCC 3 cut(s) 69, 98, 520
LweI GCATC 2 cut(s) 1021, 1042
MaeI CTAG 2 cut(s) 369, 645
MaeIII GTNAC 2 cut(s) 179, 628
MalI GATC 9 cut(s) 168, 177, 243, 507, 546, 608, 757, 783, 1048
MboI GATC 9 cut(s) 166, 175, 241, 505, 544, 606, 755, 781, 1046
MboII GAAGA 6 cut(s) 237, 356, 673, 679, 712, 1012
MflI RGATCY 2 cut(s) 505, 755
MhlI GDGCHC 1 cut(s) 135
MlsI TGGCCA 1 cut(s) 909
MluCI AATT 8 cut(s) 137, 250, 315, 413, 456, 470, 650, 888
MluNI TGGCCA 1 cut(s) 909
Mly113I GGCGCC 2 cut(s) 90, 119
MlyI GAGTC 1 cut(s) 987
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 7 cut(s) 20, 290, 385, 416, 670, 714, 1026
Mox20I TGGCCA 1 cut(s) 909
Mph1103I ATGCAT 1 cut(s) 1014
MroNI GCCGGC 1 cut(s) 155
MscI TGGCCA 1 cut(s) 909
MseI TTAA 8 cut(s) 198, 444, 510, 528, 540, 636, 776, 972
MslI CAYNNNNRTG 1 cut(s) 435
Msp20I TGGCCA 1 cut(s) 909
MspI CCGG 7 cut(s) 67, 96, 125, 156, 171, 290, 866
MspR9I CCNGG 3 cut(s) 171, 172, 290
MwoI GCNNNNNNNGC 5 cut(s) 69, 82, 98, 111, 285
NaeI GCCGGC 1 cut(s) 157
NarI GGCGCC 2 cut(s) 90, 119
NciI CCSGG 3 cut(s) 171, 172, 290
NdeI CATATG 1 cut(s) 820
NdeII GATC 9 cut(s) 166, 175, 241, 505, 544, 606, 755, 781, 1046
NgoMIV GCCGGC 1 cut(s) 155
NlaIII CATG 3 cut(s) 302, 495, 1012
NlaIV GGNNCC 6 cut(s) 71, 91, 100, 120, 465, 954
NmuCI GTSAC 1 cut(s) 628
NsiI ATGCAT 1 cut(s) 1014
PagI TCATGA 1 cut(s) 298
PdiI GCCGGC 1 cut(s) 157
PfeI GAWTC 8 cut(s) 337, 425, 670, 692, 731, 815, 833, 944
PleI GAGTC 1 cut(s) 987
PluTI GGCGCC 2 cut(s) 93, 122
PpsI GAGTC 1 cut(s) 987
PsiI TTATAA 1 cut(s) 714
PspN4I GGNNCC 6 cut(s) 71, 91, 100, 120, 465, 954
PspPI GGNCC 2 cut(s) 287, 952
PstI CTGCAG 1 cut(s) 523
PsuI RGATCY 2 cut(s) 505, 755
RsaI GTAC 1 cut(s) 725
RsaNI GTAC 1 cut(s) 724
RseI CAYNNNNRTG 1 cut(s) 435
SaqAI TTAA 8 cut(s) 198, 444, 510, 528, 540, 636, 776, 972
Sau3AI GATC 9 cut(s) 166, 175, 241, 505, 544, 606, 755, 781, 1046
Sau96I GGNCC 2 cut(s) 287, 952
SchI GAGTC 1 cut(s) 987
ScrFI CCNGG 3 cut(s) 171, 172, 290
SduI GDGCHC 1 cut(s) 135
SetI ASST 9 cut(s) 380, 396, 450, 535, 556, 635, 720, 725, 885
SfaNI GCATC 2 cut(s) 1021, 1042
SfcI CTRYAG 1 cut(s) 519
SfiI GGCCNNNNNGGCC 1 cut(s) 285
SfoI GGCGCC 2 cut(s) 91, 120
SinI GGWCC 1 cut(s) 952
SmaI CCCGGG 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 435
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 8 cut(s) 137, 250, 315, 413, 456, 470, 650, 888
SspDI GGCGCC 2 cut(s) 89, 118
SspMI CTAG 2 cut(s) 369, 645
StyD4I CCNGG 3 cut(s) 169, 170, 288
TaaI ACNGT 3 cut(s) 597, 622, 905
TaqI TCGA 4 cut(s) 12, 26, 147, 1023
TaqII GACCGA 1 cut(s) 1059
TasI AATT 8 cut(s) 137, 250, 315, 413, 456, 470, 650, 888
TfiI GAWTC 8 cut(s) 337, 425, 670, 692, 731, 815, 833, 944
Tru1I TTAA 8 cut(s) 198, 444, 510, 528, 540, 636, 776, 972
Tru9I TTAA 8 cut(s) 198, 444, 510, 528, 540, 636, 776, 972
TscAI CASTG 2 cut(s) 910, 954
TseFI GTSAC 1 cut(s) 628
Tsp45I GTSAC 1 cut(s) 628
TspDTI ATGAA 6 cut(s) 234, 426, 627, 680, 809, 997
TspMI CCCGGG 1 cut(s) 170
TspRI CASTG 2 cut(s) 910, 954
VpaK11BI GGWCC 1 cut(s) 952
XapI RAATTY 5 cut(s) 137, 250, 315, 470, 888
XcmI CCANNNNNNNNNTGG 1 cut(s) 917
XmaI CCCGGG 1 cut(s) 170
XmiI GTMKAC 1 cut(s) 599
XspI CTAG 2 cut(s) 369, 645
Zsp2I ATGCAT 1 cut(s) 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.