Rorug01G0209300

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
29562939 .. 29648225
85287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0209300.1

Sequence Viewer

Length: 3024 bp
ATGGCTGAAGGCGTTGTTACAGTTGTGGCTGAAGGGATCAAGCCCCTTGGAGAGTTCATCATTCAGCAAGCGAAATTCTTGAGTGGAGTCAGCAATCAAATTGAGCTTGCGCAGAACGAGCTACACTTGATCCGAGGATTTCTAAAAGACGCAGAAACGAATCAACAAGATGAAAAACTAGTACGCAATTGTGTTGAACTTATCAGAGATGCTGCTTATGACTTGGAGGATGTCATTGAATCTTTTAACTTGAAAGTGGCTTCCAGGAGGAGAGGAGGTACTGTGAAGATTGTTCTCAAAAGGTTTGCCTGCATCTTTAATGAAGGACTGAATCGATACAAGATTGGGTCCGAAATTAAAGATATTATGACCAAACTTTCTCATCAGAGGTTGAGTTTGCAAAGTTACAACATAAGACAAGTAAGTGGGGGTGAAAGTGTGGCTTCTGCTTTTAAGAGGCAACGAGATAGGAGGCTAACTTATGCTCATCAAGTTGAAAGTCATATTATTGGGTTGGAGGAAATTACGGAAACACTAGTGAAAAAGTTGGTGAGAGAAGGAAAGCGTCACCTAGTTATTTCTATTTGGGGGATGGGCGGCTCTGGAAAAACCACTCTTGCAAAACAGGTTTGTCGTCAAAATGAAATTAAGCGTCATTTTGATTGTTTTGCTTGGGTCTGTATATCGCAACAATGGGAAGGAAAGAATGTATTGGAAGATATTTTAGTTAAACTCACTTCCCCAACAGCAAAGAAAAGGAAAGAAATTTCCAACATGAAAATGGATGAAATAGCAGAAGAGGTCTGTAGGATCCAACGAGAAAAGAGATGTCTGGTGGTCCTTGATGACATATGGACTCAAGAGGCTTGGAATTCGATAAATGCTGGATTCCCAATCAATGAGGAAACAGAGAGCCGGATATTACTCACTACTCGCAAGAAAGAAGTCGCCTTGCTTGCATCCAGAAATGATCATCTCCACCAACCTCAGAAACTAGATGACAACCAGTGCTGGGAACTGTTTGAAAAGATAGCCATCTGTGGAAGCGACAAAACAGACTTGGAAATTGATGCAGAGAAGAGAAAATTAGGAGAGGAGATGCTTAAACATTGTTCAGGTCTACCATTAGCCATCAGTGTGCTCGCTGGTCTTCTTAGTAGACGAGAGATGGTTGATGAATGGAAGACAGTACTTCGAAATGTTAATGTATGCATAATGAGAGGCACAAATGTCCCTGAAAGAGAAAAGACAAGTCAGGAGTGTGGTGTTTCAGGTGTCTTGGCATTGAGTTATGATGACTTACCATCTCACTTGAAACTCTGCTTTCTGTATTTAGCCCAATATCCTGAGGATCATGAGATACAGGTAACAAGATTGACTCAATTATGGATTGCAGAAGGGTTTATACCTTCAACATCAGAAATACATGGTTCAATTGAATTAATGGAAGATGTGTCATATGGTTGCCTAACTGAACTGGTGCAAAGATCTATGATTCAAGTTGTAAAATCTGGTTTAAGTGGGAAGGTGAAAACTTTCCGTCTCCATGATCTTATGCGGGACTTGTGCTTGCAAAAGGCAAAAGAGGAGAACTTTCTCGGTATTGTTAACTTTTCTGTTGGTCCGGTATCTAATGCAACACTGATTGGTAAGGTTCGAAGATTTGCCCTCTATTTGGACGAAAATGTTAAATATGAGTTCAGTAGTGAGAATGGAAGAGATGGCCACATTAGGTCTCTATTATACTTTGCCCCAGAAAGGTTCAAGCAAAAGTGGAACAAAAGAATAATACGATCAGTATTCAATGACTTCAAATTGCTTAGAGTCTTGAAGTTTGAAAATATAAATGAAGATTTTGAGTTACCAAAGACGATTGGGAATCTAGTCCACTTGAGGTTTCTGAGTCTGAAGGATAGTGCATTTCGTGCGTTGCCATCATCTGTATCTAATCTGGTACTTTTGCAGACTCTAGATCTGCGTGCATTTACTGCCTTGCCATCATTATCCTCCCTTTTTTGTTGGAACAACTGGATGACCAAAATCAGCTATGTGTTTTGGAATATGGCTCAACTGAGGCATTTATATTTACCTTCTGAGCACACTGTAAGTGGTAAGAAACTGTCATTTGCAAGGCTGTGCAATTTGCAGACGTTGGTCGATGTTAGAATTGAGAAATGTGATTTGAATGATCTTGTTCAGTTAACCAATCTGAAAAAACTAGGCATAATTGCATCACAGTCTAGTGACTTGAAAAAGTTGAAGGATGTGTTGATATTAAGAAGTATAACATATGAGCATCTTCGGTCGCTAAGTTTGACCGTGTCTCGTGGTTGTGATGATTTACGAAGAGATATTGTATTAAGGTGTCCCCATTTATACAAGCTGCAACTGAACGGGAAAATGACAGCATTACCAGAAGAGCTCCTGGGCTATCCAAATCTCACCAAGATAAAGCTGAGTAAAACAAGACTGGAGGGTGACCAGATTGAAATACTGGAGAAGCTGCCCAATTTAAGGGTGCTTGACCTCGGTTCGTTTTCTTTCACATCAGAAACATTGGTTTTCTCCCGAGGCTTTCCTCATCTGGAATTTCTCACCCTTACTGAATTGTATCATTTGAAGAAGTGGAGGGTGGAGAAAGAAGCCATGCCTAGTCTCCAGAGATTGCGCATTAGATGGTGCTGGGGATTGCGGGCAGTTCCAGATGGGCTTCAGCAGATTACTACCCTCAAGGAATTAACAATTGACGGGATGCCCAATAGATTCTGCAGTAGGGTTGGGGAAGGAGGAGAGGATTTCTACAAAATCAAACATGTGCCTTCTCTCATAATCACAAATATTCACCCGGATGAGCTATTCAAGGAGCCAGAAATGGAGGAAGCAGCAGGCGCGTCCCAAGTAGTAGTTACGGGTCCAGACGGTGACTCTCATCAGGAATTAACTGTGGATGCTCCTCCTCCACCTCCTCGTGATGAGAAAACAGAGGAAATACAAGTTGCATCCCCTCCTAACCACCTCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1007

Amino Acids

115.01

Weight (kDa)

8.28

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 13 - 91 5.5e-19 Rx N-terminal domain
NB-ARC PF00931 174 - 346 5.9e-43 NB-ARC domain
WHD_DRP PF23559 448 - 523 3.8e-18 Disease resistance protein Winged helix domain
LRR_14 PF23598 599 - 916 5.6e-32 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 111, 2669
AccI GTMKAC 2 cut(s) 1120, 1159
AccII CGCG 1 cut(s) 2891
AciI CCGC 3 cut(s) 597, 1558, 2692
AclWI GGATC 5 cut(s) 44, 124, 805, 818, 1359
AcoI YGGCCR 1 cut(s) 1723
AcsI RAATTY 4 cut(s) 74, 765, 871, 2588
AcuI CTGAAG 4 cut(s) 27, 51, 1928, 2696
AfaI GTAC 4 cut(s) 183, 280, 1191, 1956
AfiI CCNNNNNNNGG 4 cut(s) 1012, 1675, 1758, 2514
AflIII ACRYGT 1 cut(s) 2812
AhlI ACTAGT 2 cut(s) 178, 535
AjnI CCWGG 2 cut(s) 263, 2424
AluBI AGCT 8 cut(s) 106, 121, 2046, 2383, 2422, 2455, 2503, 2854
AluI AGCT 8 cut(s) 106, 121, 2046, 2383, 2422, 2455, 2503, 2854
Alw21I GWGCWC 3 cut(s) 1143, 2100, 2424
Alw26I GTCTC 4 cut(s) 1547, 1740, 2328, 2660
AlwI GGATC 5 cut(s) 44, 124, 805, 818, 1359
Ama87I CYCGRG 1 cut(s) 2568
AoxI GGCC 1 cut(s) 1723
ApeKI GCWGC 4 cut(s) 212, 2383, 2503, 2882
ApoI RAATTY 4 cut(s) 74, 765, 871, 2588
AseI ATTAAT 1 cut(s) 1442
Asp700I GAANNNNTTC 1 cut(s) 1535
AspLEI GCGC 3 cut(s) 112, 2670, 2891
AspS9I GGNCC 4 cut(s) 348, 838, 1622, 2912
AsuC2I CCSGG 1 cut(s) 2846
AsuHPI GGTGA 9 cut(s) 443, 560, 562, 1540, 2434, 2489, 2587, 2834, 2933
AsuII TTCGAA 2 cut(s) 1195, 1657
AvaI CYCGRG 1 cut(s) 2568
AvaII GGWCC 4 cut(s) 348, 838, 1622, 2912
AxyI CCTNAGG 1 cut(s) 1347
BalI TGGCCA 1 cut(s) 1725
BamHI GGATCC 1 cut(s) 810
BanII GRGCYC 1 cut(s) 2424
BarI GAAGNNNNNNTAC 2 cut(s) 1389, 1421
BauI CACGAG 2 cut(s) 2325, 2967
BbsI GAAGAC 2 cut(s) 1142, 1190
Bbv12I GWGCWC 3 cut(s) 1143, 2100, 2424
BbvI GCAGC 4 cut(s) 199, 2370, 2490, 2894
BciT130I CCWGG 2 cut(s) 265, 2426
BclI TGATCA 1 cut(s) 970
BcnI CCSGG 1 cut(s) 2846
BcoDI GTCTC 4 cut(s) 1547, 1740, 2328, 2660
BcuI ACTAGT 2 cut(s) 178, 535
BfaI CTAG 9 cut(s) 179, 536, 572, 995, 1883, 1970, 2219, 2241, 2652
BfmI CTRYAG 2 cut(s) 805, 2767
BglII AGATCT 2 cut(s) 1487, 1972
BisI GCNGC 5 cut(s) 213, 598, 2384, 2504, 2883
BlsI GCNGC 5 cut(s) 214, 599, 2385, 2505, 2884
BmcAI AGTACT 1 cut(s) 1191
Bme1390I CCNGG 3 cut(s) 265, 2426, 2846
Bme18I GGWCC 4 cut(s) 348, 838, 1622, 2912
BmeT110I CYCGRG 1 cut(s) 2568
BmgT120I GGNCC 4 cut(s) 348, 838, 1622, 2912
BmiI GGNNCC 4 cut(s) 349, 812, 2865, 2913
BmrFI CCNGG 3 cut(s) 265, 2426, 2846
BoxI GACNNNNGTC 1 cut(s) 2153
BpiI GAAGAC 2 cut(s) 1142, 1190
BpmI CTGGAG 3 cut(s) 2492, 2516, 2642
Bpu14I TTCGAA 2 cut(s) 1195, 1657
BpuEI CTTGAG 4 cut(s) 100, 843, 1912, 2714
BpuMI CCSGG 1 cut(s) 2846
Bsa29I ATCGAT 1 cut(s) 334
BsaBI GATNNNNATC 1 cut(s) 1034
BsaI GGTCTC 1 cut(s) 1740
BsaJI CCNNGG 5 cut(s) 46, 133, 2425, 2527, 2569
BsaWI WCCGGW 1 cut(s) 1624
BsaXI ACNNNNNCTCC 4 cut(s) 262, 267, 292, 297
Bsc4I CCNNNNNNNGG 4 cut(s) 1012, 1675, 1758, 2514
Bse1I ACTGG 5 cut(s) 1006, 1482, 2033, 2475, 2499
Bse21I CCTNAGG 1 cut(s) 1347
Bse8I GATNNNNATC 1 cut(s) 1034
BseBI CCWGG 2 cut(s) 265, 2426
BseCI ATCGAT 1 cut(s) 334
BseDI CCNNGG 5 cut(s) 46, 133, 2425, 2527, 2569
BseJI GATNNNNATC 1 cut(s) 1034
BseLI CCNNNNNNNGG 4 cut(s) 1012, 1675, 1758, 2514
BseMII CTCAG 6 cut(s) 1001, 1338, 1892, 2063, 2085, 2447
BseNI ACTGG 5 cut(s) 1006, 1482, 2033, 2475, 2499
BseRI GAGGAG 8 cut(s) 283, 288, 1109, 1601, 2802, 2943, 2946, 2955
BseXI GCAGC 4 cut(s) 199, 2370, 2490, 2894
BseYI CCCAGC 2 cut(s) 1011, 2682
Bsh1236I CGCG 1 cut(s) 2891
Bsh1285I CGRYCG 1 cut(s) 2306
BshFI GGCC 1 cut(s) 1725
BshVI ATCGAT 1 cut(s) 334
BsiEI CGRYCG 1 cut(s) 2306
BsiHKAI GWGCWC 3 cut(s) 1143, 2100, 2424
BsiHKCI CYCGRG 1 cut(s) 2568
BsiSI CCGG 3 cut(s) 916, 1625, 2846
BslFI GGGAC 4 cut(s) 1217, 1574, 2352, 2878
BslI CCNNNNNNNGG 4 cut(s) 1012, 1675, 1758, 2514
BsmAI GTCTC 4 cut(s) 1547, 1740, 2328, 2660
BsmBI CGTCTC 1 cut(s) 1547
BsmFI GGGAC 4 cut(s) 1217, 1574, 2352, 2878
BsnI GGCC 1 cut(s) 1725
Bso31I GGTCTC 1 cut(s) 1740
BsoBI CYCGRG 1 cut(s) 2568
Bsp119I TTCGAA 2 cut(s) 1195, 1657
Bsp1286I GDGCHC 3 cut(s) 1143, 2100, 2424
BspACI CCGC 3 cut(s) 597, 1558, 2692
BspANI GGCC 1 cut(s) 1725
BspCNI CTCAG 6 cut(s) 1000, 1339, 1893, 2064, 2086, 2448
BspDI ATCGAT 1 cut(s) 334
BspFNI CGCG 1 cut(s) 2891
BspHI TCATGA 1 cut(s) 1354
BspLI GGNNCC 4 cut(s) 349, 812, 2865, 2913
BspMAI CTGCAG 1 cut(s) 2771
BspPI GGATC 5 cut(s) 44, 124, 805, 818, 1359
BspQI GCTCTTC 1 cut(s) 2412
BspT104I TTCGAA 2 cut(s) 1195, 1657
BspTNI GGTCTC 1 cut(s) 1740
BsrI ACTGG 5 cut(s) 1006, 1482, 2033, 2475, 2499
BssECI CCNNGG 5 cut(s) 46, 133, 2425, 2527, 2569
BssSI CACGAG 2 cut(s) 2325, 2967
BssT1I CCWWGG 1 cut(s) 46
Bst2BI CACGAG 2 cut(s) 2325, 2967
Bst2UI CCWGG 2 cut(s) 265, 2426
Bst6I CTCTTC 5 cut(s) 792, 1073, 1711, 2341, 2412
BstAPI GCANNNNNTGC 2 cut(s) 1925, 1988
BstBI TTCGAA 2 cut(s) 1195, 1657
BstC8I GCNNGC 9 cut(s) 69, 108, 310, 957, 1143, 1571, 1980, 2694, 2887
BstEII GGTNACC 1 cut(s) 2477
BstFNI CGCG 1 cut(s) 2891
BstHHI GCGC 3 cut(s) 112, 2670, 2891
BstMAI GTCTC 4 cut(s) 1547, 1740, 2328, 2660
BstMCI CGRYCG 1 cut(s) 2306
BstMWI GCNNNNNNNGC 5 cut(s) 118, 956, 1925, 1988, 2888
BstNI CCWGG 2 cut(s) 265, 2426
BstNSI RCATGY 1 cut(s) 2816
BstPAI GACNNNNGTC 1 cut(s) 2153
BstPI GGTNACC 1 cut(s) 2477
BstSCI CCNGG 3 cut(s) 263, 2424, 2844
BstSFI CTRYAG 2 cut(s) 805, 2767
BstUI CGCG 1 cut(s) 2891
BstV1I GCAGC 4 cut(s) 199, 2370, 2490, 2894
BstV2I GAAGAC 2 cut(s) 1142, 1190
BstX2I RGATCY 3 cut(s) 810, 1487, 1972
BstYI RGATCY 3 cut(s) 810, 1487, 1972
Bsu15I ATCGAT 1 cut(s) 334
Bsu36I CCTNAGG 1 cut(s) 1347
BsuRI GGCC 1 cut(s) 1725
BsuTUI ATCGAT 1 cut(s) 334
BtsIMutI CAGTG 4 cut(s) 1013, 1141, 1640, 2100
Cac8I GCNNGC 9 cut(s) 69, 108, 310, 957, 1143, 1571, 1980, 2694, 2887
CciI TCATGA 1 cut(s) 1354
CfoI GCGC 3 cut(s) 112, 2670, 2891
Cfr13I GGNCC 4 cut(s) 348, 838, 1622, 2912
ClaI ATCGAT 1 cut(s) 334
CseI GACGC 4 cut(s) 158, 554, 641, 2880
Csp6I GTAC 4 cut(s) 182, 279, 1190, 1955
CviAII CATG 6 cut(s) 775, 1355, 1427, 1547, 2647, 2813
CviQI GTAC 4 cut(s) 182, 279, 1190, 1955
EaeI YGGCCR 1 cut(s) 1723
Eam1104I CTCTTC 5 cut(s) 792, 1073, 1711, 2341, 2412
EarI CTCTTC 5 cut(s) 792, 1073, 1711, 2341, 2412
Ecl136II GAGCTC 1 cut(s) 2422
Eco130I CCWWGG 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 2424
Eco31I GGTCTC 1 cut(s) 1740
Eco47I GGWCC 4 cut(s) 348, 838, 1622, 2912
Eco53kI GAGCTC 1 cut(s) 2422
Eco57I CTGAAG 4 cut(s) 27, 51, 1928, 2696
Eco81I CCTNAGG 1 cut(s) 1347
Eco88I CYCGRG 1 cut(s) 2568
Eco91I GGTNACC 1 cut(s) 2477
EcoICRI GAGCTC 1 cut(s) 2422
EcoO65I GGTNACC 1 cut(s) 2477
EcoRI GAATTC 1 cut(s) 871
EcoRII CCWGG 2 cut(s) 263, 2424
EcoT14I CCWWGG 1 cut(s) 46
EcoT22I ATGCAT 1 cut(s) 1214
EcoT38I GRGCYC 1 cut(s) 2424
ErhI CCWWGG 1 cut(s) 46
Esp3I CGTCTC 1 cut(s) 1547
FaeI CATG 6 cut(s) 778, 1358, 1430, 1550, 2650, 2816
FalI AAGNNNNNCTT 2 cut(s) 427, 459
FaqI GGGAC 4 cut(s) 1217, 1574, 2352, 2878
FatI CATG 6 cut(s) 774, 1354, 1426, 1546, 2646, 2812
FauI CCCGC 2 cut(s) 1551, 2685
FauNDI CATATG 3 cut(s) 851, 1459, 2290
FbaI TGATCA 1 cut(s) 970
FblI GTMKAC 2 cut(s) 1120, 1159
Fnu4HI GCNGC 5 cut(s) 213, 598, 2384, 2504, 2883
FriOI GRGCYC 1 cut(s) 2424
Fsp4HI GCNGC 5 cut(s) 213, 598, 2384, 2504, 2883
FspBI CTAG 9 cut(s) 179, 536, 572, 995, 1883, 1970, 2219, 2241, 2652
FspI TGCGCA 2 cut(s) 111, 2669
GlaI GCGC 3 cut(s) 111, 2669, 2890
GluI GCNGC 5 cut(s) 213, 598, 2384, 2504, 2883
GsaI CCCAGC 2 cut(s) 1015, 2686
GsuI CTGGAG 3 cut(s) 2492, 2516, 2642
HaeIII GGCC 1 cut(s) 1725
HapII CCGG 3 cut(s) 916, 1625, 2846
HgaI GACGC 4 cut(s) 158, 554, 641, 2880
HhaI GCGC 3 cut(s) 112, 2670, 2891
Hin1II CATG 6 cut(s) 778, 1358, 1430, 1550, 2650, 2816
Hin6I GCGC 3 cut(s) 110, 2668, 2889
HinP1I GCGC 3 cut(s) 110, 2668, 2889
HincII GTYRAC 2 cut(s) 1609, 2202
HindII GTYRAC 2 cut(s) 1609, 2202
HpaI GTTAAC 2 cut(s) 1609, 2202
HpaII CCGG 3 cut(s) 916, 1625, 2846
HphI GGTGA 9 cut(s) 443, 560, 562, 1540, 2434, 2489, 2587, 2834, 2933
Hpy166II GTNNAC 5 cut(s) 1121, 1160, 1609, 1888, 2202
Hpy8I GTNNAC 5 cut(s) 1121, 1160, 1609, 1888, 2202
HpyCH4IV ACGT 1 cut(s) 2150
HpyF10VI GCNNNNNNNGC 5 cut(s) 118, 956, 1925, 1988, 2888
HpySE526I ACGT 1 cut(s) 2150
Hsp92II CATG 6 cut(s) 778, 1358, 1430, 1550, 2650, 2816
HspAI GCGC 3 cut(s) 110, 2668, 2889
Ksp22I TGATCA 1 cut(s) 970
KspAI GTTAAC 2 cut(s) 1609, 2202
LguI GCTCTTC 1 cut(s) 2412
LmnI GCTCC 3 cut(s) 2427, 2863, 2956
Lsp1109I GCAGC 4 cut(s) 199, 2370, 2490, 2894
MaeI CTAG 9 cut(s) 179, 536, 572, 995, 1883, 1970, 2219, 2241, 2652
MaeII ACGT 1 cut(s) 2150
MaeIII GTNAC 9 cut(s) 16, 404, 566, 1366, 1860, 2243, 2477, 2905, 2921
MfeI CAATTG 3 cut(s) 187, 1434, 2742
MflI RGATCY 3 cut(s) 810, 1487, 1972
MhlI GDGCHC 3 cut(s) 1143, 2100, 2424
MlsI TGGCCA 1 cut(s) 1725
MluNI TGGCCA 1 cut(s) 1725
MlyI GAGTC 7 cut(s) 96, 850, 1372, 1833, 1912, 1960, 2918
MmeI TCCRAC 4 cut(s) 495, 795, 838, 2000
Mox20I TGGCCA 1 cut(s) 1725
Mph1103I ATGCAT 1 cut(s) 1214
MroXI GAANNNNTTC 1 cut(s) 1535
MscI TGGCCA 1 cut(s) 1725
MslI CAYNNNNRTG 3 cut(s) 779, 1136, 2847
Msp20I TGGCCA 1 cut(s) 1725
MspI CCGG 3 cut(s) 916, 1625, 2846
MspR9I CCNGG 3 cut(s) 265, 2426, 2846
MunI CAATTG 3 cut(s) 187, 1434, 2742
MvaI CCWGG 2 cut(s) 265, 2426
MvnI CGCG 1 cut(s) 2891
MwoI GCNNNNNNNGC 5 cut(s) 118, 956, 1925, 1988, 2888
NciI CCSGG 1 cut(s) 2846
NdeI CATATG 3 cut(s) 851, 1459, 2290
NlaIII CATG 6 cut(s) 778, 1358, 1430, 1550, 2650, 2816
NlaIV GGNNCC 4 cut(s) 349, 812, 2865, 2913
NmuCI GTSAC 4 cut(s) 566, 2243, 2477, 2921
NsbI TGCGCA 2 cut(s) 111, 2669
NsiI ATGCAT 1 cut(s) 1214
NspI RCATGY 1 cut(s) 2816
NspV TTCGAA 2 cut(s) 1195, 1657
PagI TCATGA 1 cut(s) 1354
PciI ACATGT 1 cut(s) 2812
PciSI GCTCTTC 1 cut(s) 2412
PdmI GAANNNNTTC 1 cut(s) 1535
PfeI GAWTC 7 cut(s) 160, 239, 331, 888, 1495, 1879, 2763
PflFI GACNNNGTC 1 cut(s) 2320
PfoI TCCNGGA 1 cut(s) 263
PkrI GCNGC 5 cut(s) 214, 599, 2385, 2505, 2884
PleI GAGTC 7 cut(s) 95, 850, 1372, 1832, 1911, 1960, 2918
PpsI GAGTC 7 cut(s) 95, 850, 1372, 1832, 1911, 1960, 2918
PscI ACATGT 1 cut(s) 2812
PshAI GACNNNNGTC 1 cut(s) 2153
PshBI ATTAAT 1 cut(s) 1442
Psp124BI GAGCTC 1 cut(s) 2424
Psp6I CCWGG 2 cut(s) 263, 2424
PspEI GGTNACC 1 cut(s) 2477
PspFI CCCAGC 2 cut(s) 1011, 2682
PspGI CCWGG 2 cut(s) 263, 2424
PspN4I GGNNCC 4 cut(s) 349, 812, 2865, 2913
PspPI GGNCC 4 cut(s) 348, 838, 1622, 2912
PstI CTGCAG 1 cut(s) 2771
PsuI RGATCY 3 cut(s) 810, 1487, 1972
PsyI GACNNNGTC 1 cut(s) 2320
RsaI GTAC 4 cut(s) 183, 280, 1191, 1956
RsaNI GTAC 4 cut(s) 182, 279, 1190, 1955
RseI CAYNNNNRTG 3 cut(s) 779, 1136, 2847
SacI GAGCTC 1 cut(s) 2424
SapI GCTCTTC 1 cut(s) 2412
SatI GCNGC 5 cut(s) 213, 598, 2384, 2504, 2883
Sau96I GGNCC 4 cut(s) 348, 838, 1622, 2912
ScaI AGTACT 1 cut(s) 1191
SchI GAGTC 7 cut(s) 96, 850, 1372, 1833, 1912, 1960, 2918
ScrFI CCNGG 3 cut(s) 265, 2426, 2846
SduI GDGCHC 3 cut(s) 1143, 2100, 2424
SfcI CTRYAG 2 cut(s) 805, 2767
SfuI TTCGAA 2 cut(s) 1195, 1657
SinI GGWCC 4 cut(s) 348, 838, 1622, 2912
SmiMI CAYNNNNRTG 3 cut(s) 779, 1136, 2847
SmlI CTYRAG 4 cut(s) 79, 858, 1891, 2729
SmoI CTYRAG 4 cut(s) 79, 858, 1891, 2729
SpeI ACTAGT 2 cut(s) 178, 535
SsiI CCGC 3 cut(s) 597, 1558, 2692
SspI AATATT 1 cut(s) 2839
SspMI CTAG 9 cut(s) 179, 536, 572, 995, 1883, 1970, 2219, 2241, 2652
SstI GAGCTC 1 cut(s) 2424
StyD4I CCNGG 3 cut(s) 263, 2424, 2844
StyI CCWWGG 1 cut(s) 46
TaiI ACGT 1 cut(s) 2153
TaqI TCGA 5 cut(s) 334, 875, 1195, 1657, 2157
TaqII GACCGA 1 cut(s) 2292
TatI WGTACW 1 cut(s) 1189
TauI GCSGC 1 cut(s) 600
TfiI GAWTC 7 cut(s) 160, 239, 331, 888, 1495, 1879, 2763
TscAI CASTG 4 cut(s) 1013, 1141, 1647, 2107
TseFI GTSAC 4 cut(s) 566, 2243, 2477, 2921
TseI GCWGC 4 cut(s) 212, 2383, 2503, 2882
Tsp45I GTSAC 4 cut(s) 566, 2243, 2477, 2921
TspDTI ATGAA 8 cut(s) 46, 186, 336, 657, 791, 801, 1191, 1863
TspGWI ACGGA 2 cut(s) 542, 1529
TspRI CASTG 4 cut(s) 1013, 1141, 1647, 2107
Tth111I GACNNNGTC 1 cut(s) 2320
VpaK11BI GGWCC 4 cut(s) 348, 838, 1622, 2912
VspI ATTAAT 1 cut(s) 1442
XapI RAATTY 4 cut(s) 74, 765, 871, 2588
XbaI TCTAGA 1 cut(s) 1969
XceI RCATGY 1 cut(s) 2816
XcmI CCANNNNNNNNNTGG 1 cut(s) 778
XmiI GTMKAC 2 cut(s) 1120, 1159
XmnI GAANNNNTTC 1 cut(s) 1535
XspI CTAG 9 cut(s) 179, 536, 572, 995, 1883, 1970, 2219, 2241, 2652
ZrmI AGTACT 1 cut(s) 1191
Zsp2I ATGCAT 1 cut(s) 1214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.