Rmu_sc0009432.1_g000001

F-box kelch-repeat protein At3g23880-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009432.1
Physical Location & Seq
Forward (+)
1 .. 1017
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009432.1_g000001.1.cds

Sequence Viewer

Length: 469 bp
gttgttcgacttgtcactcgaggaagatgcggcaaatccaactgtagctgaggtttattcactagccaccggatcatggaaaagtcttggttctgttgcaccaccatgccgagtacatggagtaagacgccagtgttttttcaacggagctattcattgggctgtagaacctgggggaactgctggggcttatttctatttcatatttgatctcggcagtgagttatttcgtgagataatgatgccaaagggtaccgaaatgcacttagaatcgcgagtgtctgtctcgggagatgagaaatcccttgctttgttcacgaggtacagagataagaatggtgtttgttctcttgatatctgggtaatgaaagagtattgcaggcaggacttgtcgactaaactgataactttaggtccaaatttaactgtctgtagtgtagatgccattgacaagcccttaccaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

155

Amino Acids

17.2

Weight (kDa)

5.61

Isoelectric Point (pI)

29.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 252
AccB1I GGYRCC 1 cut(s) 252
AccI GTMKAC 1 cut(s) 393
AccII CGCG 1 cut(s) 275
AciI CCGC 1 cut(s) 30
AclWI GGATC 1 cut(s) 80
AcsI RAATTY 1 cut(s) 419
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 3 cut(s) 115, 254, 324
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 1 cut(s) 143
AjnI CCWGG 1 cut(s) 170
AluBI AGCT 2 cut(s) 48, 150
AluI AGCT 2 cut(s) 48, 150
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 1 cut(s) 80
Ama87I CYCGRG 2 cut(s) 18, 287
ApoI RAATTY 1 cut(s) 419
Asp718I GGTACC 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 414
AvaI CYCGRG 2 cut(s) 18, 287
AvaII GGWCC 1 cut(s) 414
BanI GGYRCC 1 cut(s) 252
BauI CACGAG 1 cut(s) 317
BbvCI CCTCAGC 1 cut(s) 49
BcgI CGANNNNNNTGC 2 cut(s) 9, 43
BciT130I CCWGG 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 1 cut(s) 63
BfmI CTRYAG 3 cut(s) 43, 163, 431
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 172
Bme18I GGWCC 1 cut(s) 414
BmeT110I CYCGRG 2 cut(s) 18, 287
BmgT120I GGNCC 1 cut(s) 414
BmiI GGNNCC 1 cut(s) 254
BmrFI CCNGG 1 cut(s) 172
BmsI GCATC 3 cut(s) 17, 232, 431
Bpu10I CCTNAGC 1 cut(s) 49
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 171
BsaWI WCCGGW 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 131
BseBI CCWGG 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 131
BseYI CCCAGC 1 cut(s) 183
Bsh1236I CGCG 1 cut(s) 275
BshNI GGYRCC 1 cut(s) 252
BsiHKCI CYCGRG 2 cut(s) 18, 287
BsiSI CCGG 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 290
BsoBI CYCGRG 2 cut(s) 18, 287
Bsp143I GATC 2 cut(s) 72, 209
Bsp68I TCGCGA 1 cut(s) 275
BspACI CCGC 1 cut(s) 30
BspCNI CTCAG 1 cut(s) 41
BspFNI CGCG 1 cut(s) 275
BspLI GGNNCC 1 cut(s) 254
BspPI GGATC 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 252
BsrI ACTGG 1 cut(s) 131
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 2 cut(s) 72, 209
BssNI GRCGYC 1 cut(s) 128
BssSI CACGAG 1 cut(s) 317
Bst2BI CACGAG 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 172
Bst4CI ACNGT 2 cut(s) 44, 428
BstACI GRCGYC 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 2 cut(s) 49, 266
BstFNI CGCG 1 cut(s) 275
BstKTI GATC 2 cut(s) 75, 212
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 2 cut(s) 72, 209
BstNI CCWGG 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 170
BstSFI CTRYAG 3 cut(s) 43, 163, 431
BstUI CGCG 1 cut(s) 275
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 2 cut(s) 138, 224
BtuMI TCGCGA 1 cut(s) 275
Cac8I GCNNGC 1 cut(s) 381
Cfr13I GGNCC 1 cut(s) 414
CseI GACGC 1 cut(s) 136
Csp6I GTAC 3 cut(s) 114, 253, 323
CviAII CATG 3 cut(s) 76, 106, 117
CviJI RGCY 6 cut(s) 48, 66, 150, 162, 189, 455
CviKI_1 RGCY 6 cut(s) 48, 66, 150, 162, 189, 455
CviQI GTAC 3 cut(s) 114, 253, 323
DdeI CTNAG 2 cut(s) 49, 266
DpnI GATC 2 cut(s) 74, 211
DpnII GATC 2 cut(s) 72, 209
Eco32I GATATC 1 cut(s) 356
Eco47I GGWCC 1 cut(s) 414
Eco88I CYCGRG 2 cut(s) 18, 287
EcoRII CCWGG 1 cut(s) 170
EcoRV GATATC 1 cut(s) 356
FaeI CATG 3 cut(s) 79, 109, 120
FaiI YATR 4 cut(s) 77, 107, 118, 204
FatI CATG 3 cut(s) 75, 105, 116
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 31
FspBI CTAG 1 cut(s) 63
GluI GCNGC 1 cut(s) 31
GsaI CCCAGC 1 cut(s) 187
HapII CCGG 1 cut(s) 70
HgaI GACGC 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 3 cut(s) 79, 109, 120
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 1 cut(s) 270
HpaII CCGG 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 316, 394
Hpy188III TCNNGA 5 cut(s) 231, 274, 289, 317, 351
Hpy8I GTNNAC 2 cut(s) 316, 394
HpyCH4III ACNGT 2 cut(s) 44, 428
HpyCH4V TGCA 3 cut(s) 99, 263, 379
HpyF3I CTNAG 2 cut(s) 49, 266
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 3 cut(s) 79, 109, 120
KpnI GGTACC 1 cut(s) 256
Kzo9I GATC 2 cut(s) 72, 209
LmnI GCTCC 1 cut(s) 147
LpnPI CCDG 8 cut(s) 83, 144, 157, 169, 184, 344, 365, 369
LweI GCATC 3 cut(s) 17, 232, 431
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 13
MalI GATC 2 cut(s) 74, 211
MboI GATC 2 cut(s) 72, 209
MboII GAAGA 1 cut(s) 36
MluCI AATT 1 cut(s) 419
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 3 cut(s) 14, 44, 313
MseI TTAA 1 cut(s) 423
MslI CAYNNNNRTG 1 cut(s) 104
MspI CCGG 1 cut(s) 70
MspR9I CCNGG 1 cut(s) 172
MvaI CCWGG 1 cut(s) 172
MvnI CGCG 1 cut(s) 275
NdeII GATC 2 cut(s) 72, 209
NlaIII CATG 3 cut(s) 79, 109, 120
NlaIV GGNNCC 1 cut(s) 254
NmeAIII GCCGAG 2 cut(s) 135, 193
NmuCI GTSAC 1 cut(s) 13
NruI TCGCGA 1 cut(s) 275
PaeR7I CTCGAG 1 cut(s) 18
PfeI GAWTC 1 cut(s) 270
PkrI GCNGC 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 170
PspFI CCCAGC 1 cut(s) 183
PspGI CCWGG 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 254
PspPI GGNCC 1 cut(s) 414
PspXI VCTCGAGB 1 cut(s) 18
RruI TCGCGA 1 cut(s) 275
RsaI GTAC 3 cut(s) 115, 254, 324
RsaNI GTAC 3 cut(s) 114, 253, 323
RseI CAYNNNNRTG 1 cut(s) 104
SalI GTCGAC 1 cut(s) 392
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 2 cut(s) 72, 209
Sau96I GGNCC 1 cut(s) 414
ScrFI CCNGG 1 cut(s) 172
SetI ASST 6 cut(s) 50, 55, 152, 173, 324, 416
SfaNI GCATC 3 cut(s) 17, 232, 431
SfcI CTRYAG 3 cut(s) 43, 163, 431
Sfr274I CTCGAG 1 cut(s) 18
SinI GGWCC 1 cut(s) 414
SlaI CTCGAG 1 cut(s) 18
SmiMI CAYNNNNRTG 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
Sse9I AATT 1 cut(s) 419
SsiI CCGC 1 cut(s) 30
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 1 cut(s) 170
TaaI ACNGT 2 cut(s) 44, 428
TaqI TCGA 3 cut(s) 7, 19, 393
TasI AATT 1 cut(s) 419
TatI WGTACW 1 cut(s) 113
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 1 cut(s) 270
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 2 cut(s) 138, 224
TseFI GTSAC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 3 cut(s) 144, 191, 381
TspGWI ACGGA 1 cut(s) 160
TspRI CASTG 2 cut(s) 138, 224
VpaK11BI GGWCC 1 cut(s) 414
XapI RAATTY 1 cut(s) 419
XhoI CTCGAG 1 cut(s) 18
XmiI GTMKAC 1 cut(s) 393
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.