Rmu_sc0010618.1_g000002

F-box kelch-repeat protein At3g23880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010618.1
OG0000068
Physical Location & Seq
Forward (+)
3303 .. 3827
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010618.1_g000002.1.cds

Sequence Viewer

Length: 525 bp
atgcatggctgctcgtccgaggcttatgttaatggagcacttcactggttggctttccgtctcaccggtggtgattatatctacttcgttttgacatttgatgtgggcactgagtcatttcgagagataatgttgccgaagaatttcatattggatctgtcattggtcttgcgattgtctgtttccggagaccaaaaatccattgctctgtttgcaaggtgcaagagtgatacagattgttttcttgatatatgggtaatgaaagagtattgcgtggagaattcgtggaccaaattgatgattctcactccacaatgtccggaaaggagtttacccatggcattgtgctttaggaagagtggagaagtggtgttggtccttgaagatagctgtgaattagtttcagctaacctggtgagcaaacagtttaaaagtcttgggagttctcaaggtcagctgtggtctgttgacccttatgaagagagccttgtcttgattgacaggaaggatgcaacttcgtactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

174

Amino Acids

19.66

Weight (kDa)

4.92

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 185, 319
AclWI GGATC 1 cut(s) 162
AcsI RAATTY 2 cut(s) 142, 280
AfaI GTAC 1 cut(s) 521
AgeI ACCGGT 1 cut(s) 65
AgsI TTSAA 1 cut(s) 383
AjnI CCWGG 1 cut(s) 411
AjuI GAANNNNNNNTTGG 2 cut(s) 134, 166
AluBI AGCT 3 cut(s) 390, 407, 457
AluI AGCT 3 cut(s) 390, 407, 457
Alw21I GWGCWC 1 cut(s) 40
Alw26I GTCTC 2 cut(s) 65, 183
AlwI GGATC 1 cut(s) 162
Aor13HI TCCGGA 2 cut(s) 185, 319
ApeKI GCWGC 1 cut(s) 9
ApoI RAATTY 2 cut(s) 142, 280
AsiGI ACCGGT 1 cut(s) 65
Asp700I GAANNNNTTC 1 cut(s) 143
AspS9I GGNCC 2 cut(s) 288, 376
AsuHPI GGTGA 3 cut(s) 55, 83, 427
AvaII GGWCC 2 cut(s) 288, 376
BaeGI GKGCMC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 40
BciT130I CCWGG 1 cut(s) 413
BcoDI GTCTC 2 cut(s) 65, 183
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
Bme1390I CCNGG 1 cut(s) 413
Bme18I GGWCC 2 cut(s) 288, 376
BmgT120I GGNCC 2 cut(s) 288, 376
BmrFI CCNGG 1 cut(s) 413
BmsI GCATC 1 cut(s) 499
BpuEI CTTGAG 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 18, 336
BsaWI WCCGGW 3 cut(s) 65, 185, 319
BsaXI ACNNNNNCTCC 4 cut(s) 269, 299, 354, 384
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 201
BseAI TCCGGA 2 cut(s) 185, 319
BseBI CCWGG 1 cut(s) 413
BseDI CCNNGG 2 cut(s) 18, 336
BseGI GGATG 1 cut(s) 514
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 50
BseSI GKGCMC 1 cut(s) 110
BshTI ACCGGT 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 40
BsiSI CCGG 3 cut(s) 66, 186, 320
BsmAI GTCTC 2 cut(s) 65, 183
BsmBI CGTCTC 1 cut(s) 65
Bso31I GGTCTC 1 cut(s) 183
Bsp1286I GDGCHC 2 cut(s) 40, 110
Bsp13I TCCGGA 2 cut(s) 185, 319
Bsp143I GATC 1 cut(s) 154
Bsp19I CCATGG 1 cut(s) 336
BspCNI CTCAG 1 cut(s) 103
BspEI TCCGGA 2 cut(s) 185, 319
BspPI GGATC 1 cut(s) 162
BspTNI GGTCTC 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 2 cut(s) 18, 336
BssMI GATC 1 cut(s) 154
BssT1I CCWWGG 1 cut(s) 336
Bst2UI CCWGG 1 cut(s) 413
Bst4CI ACNGT 1 cut(s) 426
Bst6I CTCTTC 2 cut(s) 350, 474
BstDEI CTNAG 1 cut(s) 111
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 1 cut(s) 514
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 2 cut(s) 65, 183
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 411
BstSLI GKGCMC 1 cut(s) 110
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BtgI CCRYGG 1 cut(s) 336
BtsCI GGATG 1 cut(s) 514
BtsIMutI CAGTG 2 cut(s) 43, 108
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 2 cut(s) 288, 376
CsiI ACCWGGT 1 cut(s) 411
Csp6I GTAC 1 cut(s) 520
CspAI ACCGGT 1 cut(s) 65
CviAII CATG 2 cut(s) 5, 337
CviJI RGCY 7 cut(s) 9, 23, 53, 390, 407, 457, 486
CviKI_1 RGCY 7 cut(s) 9, 23, 53, 390, 407, 457, 486
CviQI GTAC 1 cut(s) 520
DdeI CTNAG 1 cut(s) 111
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
DraI TTTAAA 1 cut(s) 430
Eam1104I CTCTTC 2 cut(s) 350, 474
EarI CTCTTC 2 cut(s) 350, 474
Eco130I CCWWGG 1 cut(s) 336
Eco31I GGTCTC 1 cut(s) 183
Eco47I GGWCC 2 cut(s) 288, 376
EcoRI GAATTC 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 411
EcoT14I CCWWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 336
Esp3I CGTCTC 1 cut(s) 65
FaeI CATG 2 cut(s) 8, 340
FaiI YATR 8 cut(s) 6, 27, 78, 149, 251, 253, 338, 477
FalI AAGNNNNNCTT 2 cut(s) 471, 503
FatI CATG 2 cut(s) 4, 336
Fnu4HI GCNGC 1 cut(s) 10
FokI GGATG 1 cut(s) 521
Fsp4HI GCNGC 1 cut(s) 10
GluI GCNGC 1 cut(s) 10
HapII CCGG 3 cut(s) 66, 186, 320
Hin1II CATG 2 cut(s) 8, 340
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HinfI GANTC 2 cut(s) 113, 301
HpaII CCGG 3 cut(s) 66, 186, 320
HphI GGTGA 3 cut(s) 55, 83, 427
Hpy166II GTNNAC 3 cut(s) 288, 332, 469
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 5 cut(s) 122, 186, 245, 320, 493
Hpy8I GTNNAC 3 cut(s) 288, 332, 469
HpyAV CCTTC 1 cut(s) 499
HpyCH4III ACNGT 1 cut(s) 426
HpyCH4V TGCA 4 cut(s) 4, 215, 222, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 1 cut(s) 111
Hsp92II CATG 2 cut(s) 8, 340
Kpn2I TCCGGA 2 cut(s) 185, 319
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 7 cut(s) 31, 79, 199, 333, 398, 425, 487
LweI GCATC 1 cut(s) 499
MabI ACCWGGT 1 cut(s) 411
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 4 cut(s) 151, 367, 395, 491
MflI RGATCY 1 cut(s) 154
MhlI GDGCHC 2 cut(s) 40, 110
MluCI AATT 4 cut(s) 142, 280, 293, 395
MlyI GAGTC 1 cut(s) 122
MnlI CCTC 1 cut(s) 13
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 2 cut(s) 185, 319
MroXI GAANNNNTTC 1 cut(s) 143
MseI TTAA 2 cut(s) 30, 429
MspA1I CMGCKG 1 cut(s) 457
MspI CCGG 3 cut(s) 66, 186, 320
MspR9I CCNGG 1 cut(s) 413
MvaI CCWGG 1 cut(s) 413
MwoI GCNNNNNNNGC 1 cut(s) 212
NcoI CCATGG 1 cut(s) 336
NdeII GATC 1 cut(s) 154
NlaIII CATG 2 cut(s) 8, 340
NsiI ATGCAT 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 143
PfeI GAWTC 1 cut(s) 301
PinAI ACCGGT 1 cut(s) 65
PkrI GCNGC 1 cut(s) 11
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 411
PspGI CCWGG 1 cut(s) 411
PspPI GGNCC 2 cut(s) 288, 376
PsuI RGATCY 1 cut(s) 154
PvuII CAGCTG 1 cut(s) 457
RsaI GTAC 1 cut(s) 521
RsaNI GTAC 1 cut(s) 520
SaqAI TTAA 2 cut(s) 30, 429
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 2 cut(s) 288, 376
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 413
SduI GDGCHC 2 cut(s) 40, 110
SetI ASST 6 cut(s) 221, 392, 409, 414, 454, 459
SexAI ACCWGGT 1 cut(s) 411
SfaNI GCATC 1 cut(s) 499
SgrAI CRCCGGYG 1 cut(s) 65
SinI GGWCC 2 cut(s) 288, 376
SmlI CTYRAG 1 cut(s) 447
SmoI CTYRAG 1 cut(s) 447
Sse9I AATT 4 cut(s) 142, 280, 293, 395
StyD4I CCNGG 1 cut(s) 411
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 1 cut(s) 426
TaqI TCGA 1 cut(s) 121
TasI AATT 4 cut(s) 142, 280, 293, 395
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 2 cut(s) 30, 429
Tru9I TTAA 2 cut(s) 30, 429
TscAI CASTG 2 cut(s) 50, 115
TseI GCWGC 1 cut(s) 9
TspDTI ATGAA 3 cut(s) 136, 275, 492
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 2 cut(s) 50, 115
VpaK11BI GGWCC 2 cut(s) 288, 376
XapI RAATTY 2 cut(s) 142, 280
XmnI GAANNNNTTC 1 cut(s) 143
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.