Rmu_co8115708.1_g000001

F-box and associated interaction domains-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8115708.1
OG0000068
Physical Location & Seq
Forward (+)
4 .. 615
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8115708.1_g000001.1.cds

Sequence Viewer

Length: 612 bp
atgaagatccaaaaacaacaatggggaggggaagactactttcctgaagaaatcatagacaaaatcctgttgaagttgcccgtcaaagatgtaatcagatgcagcaccgtgtgcaagttatggaactctctcatcaaaaaccctaccttcattcaaacccacctcaagaatcaaacccacgacggcatttcgaagcgcctcctgctcatctcccgccaatcatacgatttgcattgggataaccctgcagctttattcggtcagtattccaacctccgaaatccaattcgcaacagtaattggaccaaaggtatcggtggccaagtggtcggaacttgtaacggacttgtatgccttgctgtgtcctcaattcacggtgacccctgccctccggtgattctgtggaatccatccattagaaaatttgggtttttgcctagtcccagtcgtgccgttgattgctaccggcatgaaagttattatctctgctgtgattctcgtatagatgattataaggttgtgagaattgtcaggaaaccctattgccaggttgaggttgaggtttggtccttggcctcaggaagtgcttggaagagtcttgataatgttcct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

204

Amino Acids

23.28

Weight (kDa)

8.95

Isoelectric Point (pI)

40.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 513
AciI CCGC 1 cut(s) 214
AcoI YGGCCR 1 cut(s) 319
AcsI RAATTY 1 cut(s) 422
AcuI CTGAAG 1 cut(s) 66
AdeI CACNNNGTG 1 cut(s) 111
AfiI CCNNNNNNNGG 1 cut(s) 553
AgsI TTSAA 2 cut(s) 73, 155
AjnI CCWGG 1 cut(s) 546
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
AoxI GGCC 2 cut(s) 319, 573
ApeKI GCWGC 2 cut(s) 102, 248
ApoI RAATTY 1 cut(s) 422
AspLEI GCGC 1 cut(s) 198
AspS9I GGNCC 2 cut(s) 303, 567
AsuHPI GGTGA 2 cut(s) 389, 406
AsuII TTCGAA 1 cut(s) 191
AvaII GGWCC 2 cut(s) 303, 567
AxyI CCTNAGG 1 cut(s) 577
BalI TGGCCA 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 114, 260
BccI CCATC 1 cut(s) 418
BceAI ACGGC 2 cut(s) 199, 437
BciT130I CCWGG 1 cut(s) 548
BfaI CTAG 1 cut(s) 438
BfmI CTRYAG 1 cut(s) 246
BfoI RGCGCY 1 cut(s) 199
BisI GCNGC 2 cut(s) 103, 249
BlsI GCNGC 2 cut(s) 104, 250
Bme1390I CCNGG 1 cut(s) 548
Bme18I GGWCC 2 cut(s) 303, 567
BmgT120I GGNCC 2 cut(s) 303, 567
BmrFI CCNGG 1 cut(s) 548
BmrI ACTGGG 1 cut(s) 438
BmsI GCATC 1 cut(s) 89
BmuI ACTGGG 1 cut(s) 438
BpiI GAAGAC 1 cut(s) 39
Bpu14I TTCGAA 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 570
BsaWI WCCGGW 1 cut(s) 391
Bsc4I CCNNNNNNNGG 1 cut(s) 553
Bse118I RCCGGY 1 cut(s) 465
Bse1I ACTGG 1 cut(s) 444
Bse21I CCTNAGG 1 cut(s) 577
BseBI CCWGG 1 cut(s) 548
BseDI CCNNGG 1 cut(s) 570
BseGI GGATG 1 cut(s) 410
BseLI CCNNNNNNNGG 1 cut(s) 553
BseMII CTCAG 1 cut(s) 591
BseNI ACTGG 1 cut(s) 444
BseXI GCAGC 2 cut(s) 114, 260
BshFI GGCC 2 cut(s) 321, 575
BsiSI CCGG 2 cut(s) 392, 466
BslFI GGGAC 1 cut(s) 426
BslI CCNNNNNNNGG 1 cut(s) 553
BsmFI GGGAC 1 cut(s) 426
BsnI GGCC 2 cut(s) 321, 575
Bsp119I TTCGAA 1 cut(s) 191
Bsp143I GATC 1 cut(s) 6
BspACI CCGC 1 cut(s) 214
BspANI GGCC 2 cut(s) 321, 575
BspCNI CTCAG 1 cut(s) 590
BspMAI CTGCAG 1 cut(s) 250
BspT104I TTCGAA 1 cut(s) 191
BsrFI RCCGGY 1 cut(s) 465
BsrI ACTGG 1 cut(s) 444
BssAI RCCGGY 1 cut(s) 465
BssECI CCNNGG 1 cut(s) 570
BssMI GATC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 570
Bst2UI CCWGG 1 cut(s) 548
Bst4CI ACNGT 3 cut(s) 109, 296, 377
Bst6I CTCTTC 1 cut(s) 587
BstAPI GCANNNNNTGC 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 577
BstEII GGTNACC 1 cut(s) 377
BstF5I GGATG 1 cut(s) 410
BstH2I RGCGCY 1 cut(s) 199
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 2 cut(s) 111, 202
BstNI CCWGG 1 cut(s) 548
BstPI GGTNACC 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 546
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 2 cut(s) 114, 260
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
Bsu36I CCTNAGG 1 cut(s) 577
BsuRI GGCC 2 cut(s) 321, 575
BtsCI GGATG 1 cut(s) 410
CfoI GCGC 1 cut(s) 198
Cfr10I RCCGGY 1 cut(s) 465
Cfr13I GGNCC 2 cut(s) 303, 567
CviAII CATG 1 cut(s) 470
CviJI RGCY 3 cut(s) 251, 321, 575
CviKI_1 RGCY 3 cut(s) 251, 321, 575
DdeI CTNAG 1 cut(s) 577
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
DraIII CACNNNGTG 1 cut(s) 111
EaeI YGGCCR 1 cut(s) 319
Eam1104I CTCTTC 1 cut(s) 587
EarI CTCTTC 1 cut(s) 587
Eco130I CCWWGG 1 cut(s) 570
Eco47I GGWCC 2 cut(s) 303, 567
Eco57I CTGAAG 1 cut(s) 66
Eco81I CCTNAGG 1 cut(s) 577
Eco91I GGTNACC 1 cut(s) 377
EcoO65I GGTNACC 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 546
EcoT14I CCWWGG 1 cut(s) 570
ErhI CCWWGG 1 cut(s) 570
FaeI CATG 1 cut(s) 473
FaiI YATR 7 cut(s) 56, 121, 223, 352, 471, 503, 513
FaqI GGGAC 1 cut(s) 426
FatI CATG 1 cut(s) 469
FauI CCCGC 1 cut(s) 221
Fnu4HI GCNGC 2 cut(s) 103, 249
FokI GGATG 1 cut(s) 397
Fsp4HI GCNGC 2 cut(s) 103, 249
FspBI CTAG 1 cut(s) 438
GlaI GCGC 1 cut(s) 197
GluI GCNGC 2 cut(s) 103, 249
HaeII RGCGCY 1 cut(s) 199
HaeIII GGCC 2 cut(s) 321, 575
HapII CCGG 2 cut(s) 392, 466
HhaI GCGC 1 cut(s) 198
Hin1II CATG 1 cut(s) 473
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HinfI GANTC 5 cut(s) 169, 397, 406, 494, 595
HpaII CCGG 2 cut(s) 392, 466
HphI GGTGA 2 cut(s) 389, 406
Hpy188I TCNGA 3 cut(s) 98, 278, 332
Hpy188III TCNNGA 5 cut(s) 44, 166, 532, 579, 599
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 3 cut(s) 109, 296, 377
HpyCH4V TGCA 4 cut(s) 102, 114, 232, 248
HpyF10VI GCNNNNNNNGC 2 cut(s) 111, 202
HpyF3I CTNAG 1 cut(s) 577
Hsp92II CATG 1 cut(s) 473
HspAI GCGC 1 cut(s) 196
Kzo9I GATC 1 cut(s) 6
Lsp1109I GCAGC 2 cut(s) 114, 260
LweI GCATC 1 cut(s) 89
MaeI CTAG 1 cut(s) 438
MaeIII GTNAC 2 cut(s) 338, 377
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 4 cut(s) 16, 44, 59, 604
MflI RGATCY 1 cut(s) 6
MlsI TGGCCA 1 cut(s) 321
MluCI AATT 5 cut(s) 285, 298, 369, 422, 525
MluNI TGGCCA 1 cut(s) 321
MlyI GAGTC 1 cut(s) 604
MmeI TCCRAC 2 cut(s) 294, 310
MnlI CCTC 9 cut(s) 20, 173, 209, 284, 376, 399, 547, 553, 586
Mox20I TGGCCA 1 cut(s) 321
MscI TGGCCA 1 cut(s) 321
Msp20I TGGCCA 1 cut(s) 321
MspI CCGG 2 cut(s) 392, 466
MspR9I CCNGG 1 cut(s) 548
MvaI CCWGG 1 cut(s) 548
MwoI GCNNNNNNNGC 2 cut(s) 111, 202
NdeII GATC 1 cut(s) 6
NlaIII CATG 1 cut(s) 473
NmuCI GTSAC 1 cut(s) 377
NspV TTCGAA 1 cut(s) 191
PfeI GAWTC 4 cut(s) 169, 397, 406, 494
PkrI GCNGC 2 cut(s) 104, 250
PleI GAGTC 1 cut(s) 603
PpsI GAGTC 1 cut(s) 603
PsiI TTATAA 1 cut(s) 513
Psp6I CCWGG 1 cut(s) 546
PspEI GGTNACC 1 cut(s) 377
PspGI CCWGG 1 cut(s) 546
PspPI GGNCC 2 cut(s) 303, 567
PstI CTGCAG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 6
SatI GCNGC 2 cut(s) 103, 249
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 2 cut(s) 303, 567
SchI GAGTC 1 cut(s) 604
ScrFI CCNGG 1 cut(s) 548
SetI ASST 9 cut(s) 149, 165, 253, 276, 313, 519, 552, 558, 564
SfaNI GCATC 1 cut(s) 89
SfcI CTRYAG 1 cut(s) 246
SfuI TTCGAA 1 cut(s) 191
SinI GGWCC 2 cut(s) 303, 567
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 5 cut(s) 285, 298, 369, 422, 525
SsiI CCGC 1 cut(s) 214
SspMI CTAG 1 cut(s) 438
StyD4I CCNGG 1 cut(s) 546
StyI CCWWGG 1 cut(s) 570
TaaI ACNGT 3 cut(s) 109, 296, 377
TaqI TCGA 1 cut(s) 191
TaqII GACCGA 1 cut(s) 248
TasI AATT 5 cut(s) 285, 298, 369, 422, 525
TfiI GAWTC 4 cut(s) 169, 397, 406, 494
TseFI GTSAC 1 cut(s) 377
TseI GCWGC 2 cut(s) 102, 248
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 3 cut(s) 17, 139, 486
TspGWI ACGGA 1 cut(s) 357
VpaK11BI GGWCC 2 cut(s) 303, 567
XapI RAATTY 1 cut(s) 422
XspI CTAG 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.