Rh5DG494500

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000068
Physical Location & Seq
Reverse (-)
77579240 .. 77582016
2777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG494500.1

Sequence Viewer

Length: 1227 bp
ATGATTGACCATTTCCCTCCGGTAATCTGTCAAGAAATCCTCTTTAGACTGTCCCCGAAGTGTTTGATTAAATGCACCTTGGTAAGCAAGTCATGGAGATCTATGATTAAAAATCAAAACTTCATTCGCGGCCACCTCAGTTTCAATAACCGGTGTGGCACTCCCCTTCTACTACTCCACTGTATTACAAGAGATAGTTGCCACACCTATGGCTACAAAGTTTTCATAAATGAGGACATACCAAGGCATGAGCTTTACTCTTTGCGTCATGATAACTCTGCTTTTCATGAGTACTGCAAGCTTGTGGTTCCAGAAGTTGACAAGGAAAAGAGGTGGAATCCATGTTTCCGTGTGGTGGGAACTTGTAATGGGCTGCTATGCCTTGCAGATGATCTAGGGGCAGGAGGTAACATCTTCGTTATATGCAACCCGCTAATAAGAAAGTTAGTGACCCTTCCCGAGCCTAACATTAGTTTCGAAAGTAATAATAATGCTACTATTGGGTTCGGGTTTGATGCCGCGACCAATGACTATAAGGTTGTGAGACTTGTCCCTGATGATCCAAAAAGGAAAACTTTCGCTGAGGTTTATTCACTAGCTAGGGGCACATGGACCGATCCACGTCATGTTGCTGGTATATCGGAAATGCATGCATGCACACCCCAGGCTTTTGTTAATGGGACTCTTCATTGGCAGGCAGTACGTGGGCCAAATGGTGCTGGTTACCACTTCATTTTGACATTTGATGTGGGCAGCGAATCATTTTCTGAGATAATGATGCCAGAGAGTTTCACATCGAGCATGTTGATGAGATTTCAATCTCAACTGTCTGTTACAGGAGATGGGAAATCCATTGCTTTATTCTCGAGGTGCCCTGACTTTTTCATTCCGGCCAATGGTGTACTTGATATATGGGTAATGAAAGAGTATGGCATGCCTGAGTCTTGGACAAAATTGGCAGCTTTCCGGGGAATAGGTCCAGAACGAAGTGTGCTCCCCAAGGCATTAGGTTTTATGAAAACCGGTAAACTAGTGTTGGAACTAGTTAATGAAGATGTCTGCCGCTGGTTTTGGCTTTATACCTGTCCTGGGCATGGGTTATTCTCCATGGATCTTGTGAGCCAAAATTTTAACTACCTTGGCATTTCTGGATACAAGTATTACACCATCGATTCTTATGAAAAGAGCCTCGTCTTACTCGACGTGGACAATGCAGTTTCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

408

Amino Acids

46.16

Weight (kDa)

7.14

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 42 3.5e-08 F-box domain
F-box-like PF12937 3 - 38 3.7e-06 F-box-like
FBA_3 PF08268 102 - 346 7.6e-20 F-box associated beta propeller domain
FBA_1 PF07734 113 - 321 1.2e-21 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 870
AccII CGCG 2 cut(s) 129, 521
AciI CCGC 4 cut(s) 129, 431, 519, 1063
AclWI GGATC 3 cut(s) 554, 611, 1119
AcoI YGGCCR 2 cut(s) 130, 891
AcsI RAATTY 1 cut(s) 1126
AfaI GTAC 3 cut(s) 293, 702, 903
AfiI CCNNNNNNNGG 4 cut(s) 355, 896, 1089, 1094
AgeI ACCGGT 2 cut(s) 150, 1022
AgsI TTSAA 2 cut(s) 145, 818
AhlI ACTAGT 2 cut(s) 1030, 1042
AjiI CACGTC 2 cut(s) 623, 1204
AjnI CCWGG 2 cut(s) 663, 1087
AluBI AGCT 4 cut(s) 253, 301, 599, 962
AluI AGCT 4 cut(s) 253, 301, 599, 962
Alw21I GWGCWC 1 cut(s) 996
Alw26I GTCTC 1 cut(s) 538
AlwI GGATC 3 cut(s) 554, 611, 1119
Ama87I CYCGRG 2 cut(s) 458, 865
AoxI GGCC 3 cut(s) 130, 707, 891
ApeKI GCWGC 3 cut(s) 373, 753, 959
ApoI RAATTY 1 cut(s) 1126
AsiGI ACCGGT 2 cut(s) 150, 1022
Asp700I GAANNNNTTC 1 cut(s) 575
AspS9I GGNCC 3 cut(s) 612, 707, 977
AsuC2I CCSGG 1 cut(s) 968
AsuII TTCGAA 1 cut(s) 477
AvaI CYCGRG 2 cut(s) 458, 865
AvaII GGWCC 2 cut(s) 612, 977
BaeGI GKGCMC 2 cut(s) 608, 875
BanI GGYRCC 1 cut(s) 870
Bbv12I GWGCWC 1 cut(s) 996
BbvCI CCTCAGC 1 cut(s) 582
BbvI GCAGC 3 cut(s) 360, 765, 971
BccI CCATC 2 cut(s) 836, 1175
BciT130I CCWGG 2 cut(s) 665, 1089
BciVI GTATCC 1 cut(s) 1145
BcnI CCSGG 1 cut(s) 968
BcoDI GTCTC 1 cut(s) 538
BcuI ACTAGT 2 cut(s) 1030, 1042
BfaI CTAG 5 cut(s) 395, 596, 600, 1031, 1043
BfuI GTATCC 1 cut(s) 1145
BglII AGATCT 1 cut(s) 98
BisI GCNGC 6 cut(s) 130, 374, 519, 754, 960, 1063
BlsI GCNGC 6 cut(s) 131, 375, 520, 755, 961, 1064
BmcAI AGTACT 1 cut(s) 293
Bme1390I CCNGG 3 cut(s) 665, 968, 1089
Bme18I GGWCC 2 cut(s) 612, 977
BmeT110I CYCGRG 2 cut(s) 458, 865
BmgBI CACGTC 2 cut(s) 623, 1204
BmgT120I GGNCC 3 cut(s) 612, 707, 977
BmiI GGNNCC 2 cut(s) 309, 872
BmrFI CCNGG 3 cut(s) 665, 968, 1089
BmsI GCATC 2 cut(s) 505, 768
BplI GAGNNNNNCTC 2 cut(s) 242, 274
Bpu10I CCTNAGC 1 cut(s) 582
Bpu14I TTCGAA 1 cut(s) 477
BpuMI CCSGG 1 cut(s) 968
Bsa29I ATCGAT 1 cut(s) 1170
BsaAI YACGTR 1 cut(s) 704
BsaBI GATNNNNATC 1 cut(s) 817
BsaJI CCNNGG 8 cut(s) 78, 242, 663, 967, 999, 1088, 1107, 1138
BsaWI WCCGGW 3 cut(s) 19, 150, 1022
Bsc4I CCNNNNNNNGG 4 cut(s) 355, 896, 1089, 1094
Bse118I RCCGGY 2 cut(s) 150, 1022
Bse3DI GCAATG 1 cut(s) 852
Bse8I GATNNNNATC 1 cut(s) 817
BseBI CCWGG 2 cut(s) 665, 1089
BseCI ATCGAT 1 cut(s) 1170
BseDI CCNNGG 8 cut(s) 78, 242, 663, 967, 999, 1088, 1107, 1138
BseJI GATNNNNATC 1 cut(s) 817
BseLI CCNNNNNNNGG 4 cut(s) 355, 896, 1089, 1094
BseMI GCAATG 1 cut(s) 852
BseMII CTCAG 4 cut(s) 151, 573, 759, 930
BseSI GKGCMC 2 cut(s) 608, 875
BseXI GCAGC 3 cut(s) 360, 765, 971
Bsh1236I CGCG 2 cut(s) 129, 521
BshFI GGCC 3 cut(s) 132, 709, 893
BshNI GGYRCC 1 cut(s) 870
BshTI ACCGGT 2 cut(s) 150, 1022
BshVI ATCGAT 1 cut(s) 1170
BsiHKAI GWGCWC 1 cut(s) 996
BsiHKCI CYCGRG 2 cut(s) 458, 865
BsiSI CCGG 5 cut(s) 20, 151, 890, 967, 1023
BslFI GGGAC 3 cut(s) 37, 536, 694
BslI CCNNNNNNNGG 4 cut(s) 355, 896, 1089, 1094
BsmAI GTCTC 1 cut(s) 538
BsmFI GGGAC 3 cut(s) 37, 536, 694
BsnI GGCC 3 cut(s) 132, 709, 893
BsoBI CYCGRG 2 cut(s) 458, 865
Bsp119I TTCGAA 1 cut(s) 477
Bsp1286I GDGCHC 3 cut(s) 608, 875, 996
Bsp143I GATC 5 cut(s) 98, 391, 559, 616, 1111
Bsp19I CCATGG 1 cut(s) 1107
BspACI CCGC 4 cut(s) 129, 431, 519, 1063
BspANI GGCC 3 cut(s) 132, 709, 893
BspCNI CTCAG 4 cut(s) 150, 574, 760, 931
BspDI ATCGAT 1 cut(s) 1170
BspFNI CGCG 2 cut(s) 129, 521
BspHI TCATGA 2 cut(s) 268, 286
BspLI GGNNCC 2 cut(s) 309, 872
BspPI GGATC 3 cut(s) 554, 611, 1119
BspT104I TTCGAA 1 cut(s) 477
BspT107I GGYRCC 1 cut(s) 870
BsrDI GCAATG 1 cut(s) 852
BsrFI RCCGGY 2 cut(s) 150, 1022
BssAI RCCGGY 2 cut(s) 150, 1022
BssECI CCNNGG 8 cut(s) 78, 242, 663, 967, 999, 1088, 1107, 1138
BssMI GATC 5 cut(s) 98, 391, 559, 616, 1111
BssT1I CCWWGG 5 cut(s) 78, 242, 999, 1107, 1138
Bst2UI CCWGG 2 cut(s) 665, 1089
Bst4CI ACNGT 3 cut(s) 51, 182, 828
Bst6I CTCTTC 1 cut(s) 690
BstBAI YACGTR 1 cut(s) 704
BstBI TTCGAA 1 cut(s) 477
BstC8I GCNNGC 5 cut(s) 299, 651, 655, 696, 935
BstDEI CTNAG 4 cut(s) 137, 582, 768, 939
BstDSI CCRYGG 1 cut(s) 1107
BstEII GGTNACC 1 cut(s) 722
BstFNI CGCG 2 cut(s) 129, 521
BstKTI GATC 5 cut(s) 101, 394, 562, 619, 1114
BstMAI GTCTC 1 cut(s) 538
BstMBI GATC 5 cut(s) 98, 391, 559, 616, 1111
BstNI CCWGG 2 cut(s) 665, 1089
BstNSI RCATGY 4 cut(s) 653, 657, 805, 937
BstPI GGTNACC 1 cut(s) 722
BstSCI CCNGG 3 cut(s) 663, 966, 1087
BstSLI GKGCMC 2 cut(s) 608, 875
BstUI CGCG 2 cut(s) 129, 521
BstV1I GCAGC 3 cut(s) 360, 765, 971
BstX2I RGATCY 2 cut(s) 98, 1111
BstXI CCANNNNNNTGG 1 cut(s) 209
BstYI RGATCY 2 cut(s) 98, 1111
Bsu15I ATCGAT 1 cut(s) 1170
BsuI GTATCC 1 cut(s) 1145
BsuRI GGCC 3 cut(s) 132, 709, 893
BsuTUI ATCGAT 1 cut(s) 1170
BtgI CCRYGG 1 cut(s) 1107
BtrI CACGTC 2 cut(s) 623, 1204
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 5 cut(s) 299, 651, 655, 696, 935
CciI TCATGA 2 cut(s) 268, 286
Cfr10I RCCGGY 2 cut(s) 150, 1022
Cfr13I GGNCC 3 cut(s) 612, 707, 977
ClaI ATCGAT 1 cut(s) 1170
CseI GACGC 1 cut(s) 254
Csp6I GTAC 3 cut(s) 292, 701, 902
CspAI ACCGGT 2 cut(s) 150, 1022
CviQI GTAC 3 cut(s) 292, 701, 902
DdeI CTNAG 4 cut(s) 137, 582, 768, 939
DpnI GATC 5 cut(s) 100, 393, 561, 618, 1113
DpnII GATC 5 cut(s) 98, 391, 559, 616, 1111
EaeI YGGCCR 2 cut(s) 130, 891
Eam1104I CTCTTC 1 cut(s) 690
EarI CTCTTC 1 cut(s) 690
Eco130I CCWWGG 5 cut(s) 78, 242, 999, 1107, 1138
Eco47I GGWCC 2 cut(s) 612, 977
Eco88I CYCGRG 2 cut(s) 458, 865
Eco91I GGTNACC 1 cut(s) 722
EcoO65I GGTNACC 1 cut(s) 722
EcoRII CCWGG 2 cut(s) 663, 1087
EcoT14I CCWWGG 5 cut(s) 78, 242, 999, 1107, 1138
EcoT22I ATGCAT 2 cut(s) 651, 655
ErhI CCWWGG 5 cut(s) 78, 242, 999, 1107, 1138
FalI AAGNNNNNCTT 2 cut(s) 559, 591
FaqI GGGAC 3 cut(s) 37, 536, 694
FauI CCCGC 1 cut(s) 438
Fnu4HI GCNGC 6 cut(s) 130, 374, 519, 754, 960, 1063
Fsp4HI GCNGC 6 cut(s) 130, 374, 519, 754, 960, 1063
FspBI CTAG 5 cut(s) 395, 596, 600, 1031, 1043
GluI GCNGC 6 cut(s) 130, 374, 519, 754, 960, 1063
HaeIII GGCC 3 cut(s) 132, 709, 893
HapII CCGG 5 cut(s) 20, 151, 890, 967, 1023
HgaI GACGC 1 cut(s) 254
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 299
HinfI GANTC 5 cut(s) 337, 682, 758, 941, 1172
HpaII CCGG 5 cut(s) 20, 151, 890, 967, 1023
Hpy166II GTNNAC 4 cut(s) 319, 902, 1028, 1207
Hpy188I TCNGA 2 cut(s) 643, 769
Hpy188III TCNNGA 8 cut(s) 32, 269, 287, 311, 458, 865, 980, 1149
Hpy8I GTNNAC 4 cut(s) 319, 902, 1028, 1207
Hpy99I CGWCG 1 cut(s) 1205
HpyAV CCTTC 2 cut(s) 176, 464
HpyCH4III ACNGT 3 cut(s) 51, 182, 828
HpyCH4IV ACGT 3 cut(s) 622, 703, 1203
HpyCH4V TGCA 8 cut(s) 75, 297, 386, 426, 649, 653, 657, 1214
HpyF3I CTNAG 4 cut(s) 137, 582, 768, 939
HpySE526I ACGT 3 cut(s) 622, 703, 1203
Kzo9I GATC 5 cut(s) 98, 391, 559, 616, 1111
LmnI GCTCC 1 cut(s) 999
Lsp1109I GCAGC 3 cut(s) 360, 765, 971
LweI GCATC 2 cut(s) 505, 768
MaeI CTAG 5 cut(s) 395, 596, 600, 1031, 1043
MaeII ACGT 3 cut(s) 622, 703, 1203
MaeIII GTNAC 4 cut(s) 407, 448, 722, 832
MalI GATC 5 cut(s) 100, 393, 561, 618, 1113
MboI GATC 5 cut(s) 98, 391, 559, 616, 1111
MboII GAAGA 3 cut(s) 406, 677, 1064
MflI RGATCY 2 cut(s) 98, 1111
MhlI GDGCHC 3 cut(s) 608, 875, 996
MluCI AATT 2 cut(s) 953, 1126
MlyI GAGTC 2 cut(s) 676, 950
MmeI TCCRAC 1 cut(s) 1017
MnlI CCTC 9 cut(s) 27, 50, 146, 226, 324, 398, 577, 861, 1199
Mph1103I ATGCAT 2 cut(s) 651, 655
MroXI GAANNNNTTC 1 cut(s) 575
MseI TTAA 5 cut(s) 69, 108, 675, 1047, 1131
MslI CAYNNNNRTG 2 cut(s) 207, 806
MspA1I CMGCKG 1 cut(s) 1065
MspI CCGG 5 cut(s) 20, 151, 890, 967, 1023
MspR9I CCNGG 3 cut(s) 665, 968, 1089
MvaI CCWGG 2 cut(s) 665, 1089
MvnI CGCG 2 cut(s) 129, 521
NciI CCSGG 1 cut(s) 968
NcoI CCATGG 1 cut(s) 1107
NdeII GATC 5 cut(s) 98, 391, 559, 616, 1111
NlaIV GGNNCC 2 cut(s) 309, 872
NmuCI GTSAC 1 cut(s) 448
NsiI ATGCAT 2 cut(s) 651, 655
NspI RCATGY 4 cut(s) 653, 657, 805, 937
NspV TTCGAA 1 cut(s) 477
PaeI GCATGC 3 cut(s) 653, 657, 937
PaeR7I CTCGAG 1 cut(s) 865
PagI TCATGA 2 cut(s) 268, 286
PcsI WCGNNNNNNNCGW 1 cut(s) 1197
PdmI GAANNNNTTC 1 cut(s) 575
PfeI GAWTC 3 cut(s) 337, 758, 1172
PinAI ACCGGT 2 cut(s) 150, 1022
PkrI GCNGC 6 cut(s) 131, 375, 520, 755, 961, 1064
PleI GAGTC 2 cut(s) 676, 949
PpsI GAGTC 2 cut(s) 676, 949
Ppu21I YACGTR 1 cut(s) 704
Psp6I CCWGG 2 cut(s) 663, 1087
PspEI GGTNACC 1 cut(s) 722
PspGI CCWGG 2 cut(s) 663, 1087
PspN4I GGNNCC 2 cut(s) 309, 872
PspPI GGNCC 3 cut(s) 612, 707, 977
PsuI RGATCY 2 cut(s) 98, 1111
RsaI GTAC 3 cut(s) 293, 702, 903
RsaNI GTAC 3 cut(s) 292, 701, 902
RseI CAYNNNNRTG 2 cut(s) 207, 806
SaqAI TTAA 5 cut(s) 69, 108, 675, 1047, 1131
SatI GCNGC 6 cut(s) 130, 374, 519, 754, 960, 1063
Sau3AI GATC 5 cut(s) 98, 391, 559, 616, 1111
Sau96I GGNCC 3 cut(s) 612, 707, 977
ScaI AGTACT 1 cut(s) 293
SchI GAGTC 2 cut(s) 676, 950
ScrFI CCNGG 3 cut(s) 665, 968, 1089
SduI GDGCHC 3 cut(s) 608, 875, 996
SfaNI GCATC 2 cut(s) 505, 768
Sfr274I CTCGAG 1 cut(s) 865
SfuI TTCGAA 1 cut(s) 477
SinI GGWCC 2 cut(s) 612, 977
SlaI CTCGAG 1 cut(s) 865
SmiMI CAYNNNNRTG 2 cut(s) 207, 806
SmlI CTYRAG 1 cut(s) 865
SmoI CTYRAG 1 cut(s) 865
SpeI ACTAGT 2 cut(s) 1030, 1042
SphI GCATGC 3 cut(s) 653, 657, 937
Sse9I AATT 2 cut(s) 953, 1126
SsiI CCGC 4 cut(s) 129, 431, 519, 1063
SspMI CTAG 5 cut(s) 395, 596, 600, 1031, 1043
StyD4I CCNGG 3 cut(s) 663, 966, 1087
StyI CCWWGG 5 cut(s) 78, 242, 999, 1107, 1138
TaaI ACNGT 3 cut(s) 51, 182, 828
TaiI ACGT 3 cut(s) 625, 706, 1206
TaqI TCGA 5 cut(s) 477, 797, 866, 1170, 1200
TaqII GACCGA 1 cut(s) 629
TasI AATT 2 cut(s) 953, 1126
TatI WGTACW 2 cut(s) 291, 901
TauI GCSGC 3 cut(s) 132, 521, 1065
TfiI GAWTC 3 cut(s) 337, 758, 1172
Tru1I TTAA 5 cut(s) 69, 108, 675, 1047, 1131
Tru9I TTAA 5 cut(s) 69, 108, 675, 1047, 1131
TscAI CASTG 1 cut(s) 185
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 3 cut(s) 373, 753, 959
Tsp45I GTSAC 1 cut(s) 448
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 1 cut(s) 185
VpaK11BI GGWCC 2 cut(s) 612, 977
XapI RAATTY 1 cut(s) 1126
XceI RCATGY 4 cut(s) 653, 657, 805, 937
XhoI CTCGAG 1 cut(s) 865
XmnI GAANNNNTTC 1 cut(s) 575
XspI CTAG 5 cut(s) 395, 596, 600, 1031, 1043
ZrmI AGTACT 1 cut(s) 293
Zsp2I ATGCAT 2 cut(s) 651, 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.