Rh5DG534000

F-box kelch-repeat protein At3g23880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000068
Physical Location & Seq
Forward (+)
82237406 .. 82243981
6576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG534000.1

Sequence Viewer

Length: 1242 bp
ATGTCAGACTATCTTCCTCAGGAAGTCATAACCAATATATTACTTAGACTACCCAGTAAATCTTTGGTCATATGCACCTCAGTCTGCAAGTCGTGGAGGTCCATGATTAAAGACTCAAGCTTTATTGGCGCCCACCTCAGCCGAACTATCAATTTTAACAACCACCATGGCACTCACCTCCTACTACTTCACAGGTTTTCTAGCATCAGGGACCACAGGAGTTCAGTCCACGGGGTAAAAGAGGAGGTTTACTCTTTGCATTATGATAACAATGCTTTTGATGATTGCTGTGAGATAGGATTTCAATCTCCAATTGCTGATACGGAAATGTATAATGAGTGTTTCCGTGTGGTTGGTGTTTGTAAGGGGCTGGTATGCCTCGCAGATGATTTAGAACGCTATGGTTACAACTTCTTGATATGGAATCCCTCTATAAGAAAGTTAGTAACCCTTCCCAAGCCTGGCCTTACCTTTCAGACTGTTGGTGGGTATTATGCTTATCATGGGTTCGCATTTGATGCTATTACCAATGACTATAAGGTTGTGAGGCTTGTCGAGGATCAATATGGATGGAATGACGAACAAGCTGAGAATCGAACTTTTGTGGAGATTTATTCCCTAGCTGCAGGCTCATGGAGTAATCCTAGGATTGTTGATCCCCGACGTTCGTTACTTGGACAACGCTTATCCCAGGCTTTTGTTAATGGGGCTCTTCATTGGGATGCATACGGTTTGGGAAGTAAGCTACATTATATATTGGCATTTGATGTGGGCAGTGAGTTATTCCGGGAGATAATGATGCCAAAGAGTTTGGATTGGGATTTATTTAAGTCATGGCATGAAGACTTGTCATTGCGATTGTCTGTTTCAGGAGATGGAAAATCCCTTGCTCTGTTCATGAGGTATAATGGTTATATAAATCCCAATTCTTTCCTGGATGTATGGGTAATGAAAGAGTATCGTGTGGAGGAGTCGTGGACCAAATTGGTAACTCTCCGTCCACAAGGTCCACAAAGAAGTTTACCTAGAGCTTTATGTTTTAGGAAAAGCGGTGAAGTAGTAATGGTACGTAATCTTAGGCAGCATTATGGAGGCGAAGAAGCTATAAATGAATTAGTTTCGCTAGATCTTGTGAGCGGACAATTCAAGAATCTTGGGATTTGTCGATATAAATATTACACCATTGATCCTTATGAAGAAAGCATTGTCTTACTTGACAGGAATGAAGCACTTTCTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

413

Amino Acids

47.5

Weight (kDa)

6.36

Isoelectric Point (pI)

38.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 4 - 40 1e-08 F-box-like
F-box PF00646 5 - 41 3e-09 F-box domain
FBA_1 PF07734 82 - 339 1.3e-18 F-box associated beta propeller domain
FBA_3 PF08268 109 - 357 5.1e-18 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 116 - 258 1.4e-06 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 128
AccBSI CCGCTC 1 cut(s) 1137
AciI CCGC 2 cut(s) 1050, 1137
AclWI GGATC 3 cut(s) 567, 650, 1181
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 1 cut(s) 1068
AfiI CCNNNNNNNGG 1 cut(s) 461
AgsI TTSAA 2 cut(s) 305, 1147
AjnI CCWGG 3 cut(s) 460, 690, 933
AluBI AGCT 6 cut(s) 120, 587, 623, 745, 1031, 1103
AluI AGCT 6 cut(s) 120, 587, 623, 745, 1031, 1103
AlwI GGATC 3 cut(s) 567, 650, 1181
AoxI GGCC 1 cut(s) 463
ApeKI GCWGC 2 cut(s) 623, 1081
AspA2I CCTAGG 1 cut(s) 644
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 4 cut(s) 99, 211, 978, 1007
AsuC2I CCSGG 1 cut(s) 788
AsuHPI GGTGA 2 cut(s) 167, 1064
AvaII GGWCC 4 cut(s) 99, 211, 978, 1007
AvrII CCTAGG 1 cut(s) 644
AxyI CCTNAGG 1 cut(s) 18
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 712
BbsI GAAGAC 1 cut(s) 849
BbvCI CCTCAGC 1 cut(s) 137
BbvI GCAGC 2 cut(s) 610, 1093
BccI CCATC 2 cut(s) 564, 869
BciT130I CCWGG 3 cut(s) 462, 692, 935
BcnI CCSGG 1 cut(s) 788
BfaI CTAG 5 cut(s) 201, 620, 645, 1026, 1124
BfmI CTRYAG 1 cut(s) 624
BfoI RGCGCY 1 cut(s) 132
BglII AGATCT 1 cut(s) 1126
BisI GCNGC 2 cut(s) 624, 1082
BlnI CCTAGG 1 cut(s) 644
BlsI GCNGC 2 cut(s) 625, 1083
Bme1390I CCNGG 4 cut(s) 462, 692, 788, 935
Bme18I GGWCC 4 cut(s) 99, 211, 978, 1007
BmgT120I GGNCC 4 cut(s) 99, 211, 978, 1007
BmiI GGNNCC 2 cut(s) 130, 212
BmrFI CCNGG 4 cut(s) 462, 692, 788, 935
BmrI ACTGGG 1 cut(s) 48
BmsI GCATC 4 cut(s) 213, 508, 712, 789
BmuI ACTGGG 1 cut(s) 48
BpiI GAAGAC 1 cut(s) 849
BplI GAGNNNNNCTC 2 cut(s) 236, 268
Bpu10I CCTNAGC 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 100
BpuMI CCSGG 1 cut(s) 788
BsaAI YACGTR 1 cut(s) 1070
BsaBI GATNNNNATC 1 cut(s) 304
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 4 cut(s) 166, 229, 644, 690
BsaXI ACNNNNNCTCC 2 cut(s) 959, 989
Bsc4I CCNNNNNNNGG 1 cut(s) 461
Bse1I ACTGG 1 cut(s) 54
Bse21I CCTNAGG 1 cut(s) 18
Bse3DI GCAATG 1 cut(s) 851
Bse8I GATNNNNATC 1 cut(s) 304
BseBI CCWGG 3 cut(s) 462, 692, 935
BseDI CCNNGG 4 cut(s) 166, 229, 644, 690
BseGI GGATG 3 cut(s) 575, 727, 943
BseJI GATNNNNATC 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 461
BseMI GCAATG 1 cut(s) 851
BseMII CTCAG 4 cut(s) 32, 93, 151, 579
BseNI ACTGG 1 cut(s) 54
BseRI GAGGAG 2 cut(s) 257, 983
BseXI GCAGC 2 cut(s) 610, 1093
BshFI GGCC 1 cut(s) 465
BshNI GGYRCC 1 cut(s) 128
BsiSI CCGG 1 cut(s) 787
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 461
BsmFI GGGAC 1 cut(s) 224
BsnI GGCC 1 cut(s) 465
Bsp1286I GDGCHC 1 cut(s) 712
Bsp143I GATC 4 cut(s) 559, 655, 1126, 1186
Bsp19I CCATGG 1 cut(s) 166
BspACI CCGC 2 cut(s) 1050, 1137
BspANI GGCC 1 cut(s) 465
BspCNI CTCAG 4 cut(s) 31, 92, 150, 580
BspHI TCATGA 1 cut(s) 897
BspLI GGNNCC 2 cut(s) 130, 212
BspMAI CTGCAG 1 cut(s) 628
BspPI GGATC 3 cut(s) 567, 650, 1181
BspQI GCTCTTC 1 cut(s) 717
BspT107I GGYRCC 1 cut(s) 128
BsrBI CCGCTC 1 cut(s) 1137
BsrDI GCAATG 1 cut(s) 851
BsrI ACTGG 1 cut(s) 54
BssECI CCNNGG 4 cut(s) 166, 229, 644, 690
BssMI GATC 4 cut(s) 559, 655, 1126, 1186
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 2 cut(s) 166, 644
Bst2UI CCWGG 3 cut(s) 462, 692, 935
Bst4CI ACNGT 2 cut(s) 481, 731
Bst6I CTCTTC 1 cut(s) 717
BstACI GRCGYC 1 cut(s) 129
BstAPI GCANNNNNTGC 1 cut(s) 518
BstBAI YACGTR 1 cut(s) 1070
BstC8I GCNNGC 1 cut(s) 628
BstDEI CTNAG 6 cut(s) 18, 44, 79, 137, 588, 1076
BstDSI CCRYGG 2 cut(s) 166, 229
BstF5I GGATG 3 cut(s) 575, 727, 943
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 4 cut(s) 562, 658, 1129, 1189
BstMBI GATC 4 cut(s) 559, 655, 1126, 1186
BstMWI GCNNNNNNNGC 2 cut(s) 126, 518
BstNI CCWGG 3 cut(s) 462, 692, 935
BstSCI CCNGG 4 cut(s) 460, 690, 786, 933
BstSFI CTRYAG 1 cut(s) 624
BstSNI TACGTA 1 cut(s) 1070
BstV1I GCAGC 2 cut(s) 610, 1093
BstV2I GAAGAC 1 cut(s) 849
BstX2I RGATCY 1 cut(s) 1126
BstYI RGATCY 1 cut(s) 1126
Bsu36I CCTNAGG 1 cut(s) 18
BsuRI GGCC 1 cut(s) 465
BtgI CCRYGG 2 cut(s) 166, 229
BtsCI GGATG 3 cut(s) 575, 727, 943
BtsI GCAGTG 1 cut(s) 781
BtsIMutI CAGTG 1 cut(s) 781
Cac8I GCNNGC 1 cut(s) 628
CciI TCATGA 1 cut(s) 897
CfoI GCGC 1 cut(s) 131
Cfr13I GGNCC 4 cut(s) 99, 211, 978, 1007
Csp6I GTAC 1 cut(s) 1067
CviAII CATG 7 cut(s) 103, 167, 503, 633, 834, 839, 898
CviQI GTAC 1 cut(s) 1067
DdeI CTNAG 6 cut(s) 18, 44, 79, 137, 588, 1076
DinI GGCGCC 1 cut(s) 130
DpnI GATC 4 cut(s) 561, 657, 1128, 1188
DpnII GATC 4 cut(s) 559, 655, 1126, 1186
Eam1104I CTCTTC 1 cut(s) 717
EarI CTCTTC 1 cut(s) 717
Eco105I TACGTA 1 cut(s) 1070
Eco130I CCWWGG 2 cut(s) 166, 644
Eco24I GRGCYC 1 cut(s) 712
Eco47I GGWCC 4 cut(s) 99, 211, 978, 1007
Eco81I CCTNAGG 1 cut(s) 18
EcoRII CCWGG 3 cut(s) 460, 690, 933
EcoT14I CCWWGG 2 cut(s) 166, 644
EcoT22I ATGCAT 1 cut(s) 727
EcoT38I GRGCYC 1 cut(s) 712
EgeI GGCGCC 1 cut(s) 130
EheI GGCGCC 1 cut(s) 130
ErhI CCWWGG 2 cut(s) 166, 644
FaeI CATG 7 cut(s) 106, 170, 506, 636, 837, 842, 901
FaqI GGGAC 1 cut(s) 224
FatI CATG 7 cut(s) 102, 166, 502, 632, 833, 838, 897
FauNDI CATATG 1 cut(s) 71
Fnu4HI GCNGC 2 cut(s) 624, 1082
FokI GGATG 3 cut(s) 582, 734, 950
FriOI GRGCYC 1 cut(s) 712
Fsp4HI GCNGC 2 cut(s) 624, 1082
FspBI CTAG 5 cut(s) 201, 620, 645, 1026, 1124
GlaI GCGC 1 cut(s) 130
GluI GCNGC 2 cut(s) 624, 1082
HaeII RGCGCY 1 cut(s) 132
HaeIII GGCC 1 cut(s) 465
HapII CCGG 1 cut(s) 787
HhaI GCGC 1 cut(s) 131
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 7 cut(s) 106, 170, 506, 636, 837, 842, 901
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HindIII AAGCTT 1 cut(s) 118
HinfI GANTC 5 cut(s) 113, 424, 592, 971, 1150
HpaII CCGG 1 cut(s) 787
HphI GGTGA 2 cut(s) 167, 1064
Hpy166II GTNNAC 6 cut(s) 229, 250, 978, 1001, 1010, 1022
Hpy188I TCNGA 2 cut(s) 7, 477
Hpy188III TCNNGA 5 cut(s) 20, 415, 870, 898, 1147
Hpy8I GTNNAC 6 cut(s) 229, 250, 978, 1001, 1010, 1022
Hpy99I CGWCG 1 cut(s) 666
HpyAV CCTTC 1 cut(s) 461
HpyCH4III ACNGT 2 cut(s) 481, 731
HpyCH4IV ACGT 2 cut(s) 664, 1069
HpyCH4V TGCA 5 cut(s) 75, 87, 259, 626, 725
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 518
HpyF3I CTNAG 6 cut(s) 18, 44, 79, 137, 588, 1076
HpySE526I ACGT 2 cut(s) 664, 1069
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 7 cut(s) 106, 170, 506, 636, 837, 842, 901
HspAI GCGC 1 cut(s) 129
KasI GGCGCC 1 cut(s) 128
Kzo9I GATC 4 cut(s) 559, 655, 1126, 1186
LguI GCTCTTC 1 cut(s) 717
Lsp1109I GCAGC 2 cut(s) 610, 1093
LweI GCATC 4 cut(s) 213, 508, 712, 789
MaeI CTAG 5 cut(s) 201, 620, 645, 1026, 1124
MaeII ACGT 2 cut(s) 664, 1069
MaeIII GTNAC 4 cut(s) 404, 445, 669, 988
MalI GATC 4 cut(s) 561, 657, 1128, 1188
MbiI CCGCTC 1 cut(s) 1137
MboI GATC 4 cut(s) 559, 655, 1126, 1186
MboII GAAGA 5 cut(s) 5, 704, 854, 1109, 1208
MfeI CAATTG 1 cut(s) 312
MflI RGATCY 1 cut(s) 1126
MhlI GDGCHC 1 cut(s) 712
MluCI AATT 6 cut(s) 151, 312, 925, 983, 1112, 1142
Mly113I GGCGCC 1 cut(s) 129
MlyI GAGTC 2 cut(s) 107, 980
Mph1103I ATGCAT 1 cut(s) 727
MseI TTAA 4 cut(s) 108, 156, 702, 828
MslI CAYNNNNRTG 1 cut(s) 720
MspI CCGG 1 cut(s) 787
MspR9I CCNGG 4 cut(s) 462, 692, 788, 935
MunI CAATTG 1 cut(s) 312
MvaI CCWGG 3 cut(s) 462, 692, 935
MwoI GCNNNNNNNGC 2 cut(s) 126, 518
NarI GGCGCC 1 cut(s) 129
NciI CCSGG 1 cut(s) 788
NcoI CCATGG 1 cut(s) 166
NdeI CATATG 1 cut(s) 71
NdeII GATC 4 cut(s) 559, 655, 1126, 1186
NlaIII CATG 7 cut(s) 106, 170, 506, 636, 837, 842, 901
NlaIV GGNNCC 2 cut(s) 130, 212
NsiI ATGCAT 1 cut(s) 727
PagI TCATGA 1 cut(s) 897
PciSI GCTCTTC 1 cut(s) 717
PfeI GAWTC 3 cut(s) 424, 592, 1150
PfoI TCCNGGA 2 cut(s) 786, 933
PkrI GCNGC 2 cut(s) 625, 1083
PleI GAGTC 2 cut(s) 107, 979
PluTI GGCGCC 1 cut(s) 132
PpsI GAGTC 2 cut(s) 107, 979
Ppu21I YACGTR 1 cut(s) 1070
Psp6I CCWGG 3 cut(s) 460, 690, 933
PspGI CCWGG 3 cut(s) 460, 690, 933
PspN4I GGNNCC 2 cut(s) 130, 212
PspPI GGNCC 4 cut(s) 99, 211, 978, 1007
PstI CTGCAG 1 cut(s) 628
PsuI RGATCY 1 cut(s) 1126
RsaI GTAC 1 cut(s) 1068
RsaNI GTAC 1 cut(s) 1067
RseI CAYNNNNRTG 1 cut(s) 720
SapI GCTCTTC 1 cut(s) 717
SaqAI TTAA 4 cut(s) 108, 156, 702, 828
SatI GCNGC 2 cut(s) 624, 1082
Sau3AI GATC 4 cut(s) 559, 655, 1126, 1186
Sau96I GGNCC 4 cut(s) 99, 211, 978, 1007
SchI GAGTC 2 cut(s) 107, 980
ScrFI CCNGG 4 cut(s) 462, 692, 788, 935
SduI GDGCHC 1 cut(s) 712
SfaNI GCATC 4 cut(s) 213, 508, 712, 789
SfcI CTRYAG 1 cut(s) 624
SfoI GGCGCC 1 cut(s) 130
SinI GGWCC 4 cut(s) 99, 211, 978, 1007
SmiMI CAYNNNNRTG 1 cut(s) 720
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
SnaBI TACGTA 1 cut(s) 1070
Sse9I AATT 6 cut(s) 151, 312, 925, 983, 1112, 1142
SsiI CCGC 2 cut(s) 1050, 1137
SspDI GGCGCC 1 cut(s) 128
SspI AATATT 1 cut(s) 1175
SspMI CTAG 5 cut(s) 201, 620, 645, 1026, 1124
StyD4I CCNGG 4 cut(s) 460, 690, 786, 933
StyI CCWWGG 2 cut(s) 166, 644
TaaI ACNGT 2 cut(s) 481, 731
TaiI ACGT 2 cut(s) 667, 1072
TaqI TCGA 3 cut(s) 555, 595, 1165
TasI AATT 6 cut(s) 151, 312, 925, 983, 1112, 1142
TfiI GAWTC 3 cut(s) 424, 592, 1150
Tru1I TTAA 4 cut(s) 108, 156, 702, 828
Tru9I TTAA 4 cut(s) 108, 156, 702, 828
TscAI CASTG 1 cut(s) 781
TseI GCWGC 2 cut(s) 623, 1081
TspDTI ATGAA 7 cut(s) 704, 855, 886, 965, 1125, 1209, 1239
TspGWI ACGGA 3 cut(s) 335, 338, 986
TspRI CASTG 1 cut(s) 781
VpaK11BI GGWCC 4 cut(s) 99, 211, 978, 1007
XcmI CCANNNNNNNNNTGG 2 cut(s) 61, 931
XmaJI CCTAGG 1 cut(s) 644
XspI CTAG 5 cut(s) 201, 620, 645, 1026, 1124
Zsp2I ATGCAT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.