Rmu_sc0015338.1_g000008

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015338.1
OG0000068
Physical Location & Seq
Forward (+)
30572 .. 31120
549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015338.1_g000008.1.cds

Sequence Viewer

Length: 549 bp
atgtcagactactttcctgaggaaatcatacaaagaatcctgttgaggttgcctaccaaatccctaatcaaatccaccctagtctgcaagtcatggatgtcacttatcaaatcctcttccttcattcaatcccatctctccaccacaatcgactccaacaaccaaaacgacgcccacctcctcctcctcagcgctttcccttacgacgtttctgatcgtttgcactggttgcattgggatagccctgaattcagtgagtattccatgcttgcagacccagtcactttcttggaaaacaaacgtatttcggaactagaggttgtcggaacttgtaacgggctcatatgccttgcgcctgccatatctggtaaccattccccctctttaatttggaacccatgtattagaaagattgtgattttgcctagcccacctgcttgttttacctctaatcagtatgatgagtacataaagcatggctttggctatgattcacattccaatgactataaggtgttgagaattgtgactcttcctgatgatcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

182

Amino Acids

20.73

Weight (kDa)

5.68

Isoelectric Point (pI)

55.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 442
Acc36I ACCTGC 1 cut(s) 442
AcsI RAATTY 1 cut(s) 248
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 1 cut(s) 467
AfeI AGCGCT 1 cut(s) 193
AgsI TTSAA 1 cut(s) 128
Aor51HI AGCGCT 1 cut(s) 193
ApoI RAATTY 1 cut(s) 248
AspLEI GCGC 2 cut(s) 194, 355
AxyI CCTNAGG 1 cut(s) 18
BanII GRGCYC 1 cut(s) 342
BbvCI CCTCAGC 1 cut(s) 188
BccI CCATC 1 cut(s) 141
BclI TGATCA 1 cut(s) 541
BfaI CTAG 3 cut(s) 80, 314, 426
BfoI RGCGCY 1 cut(s) 195
BfuAI ACCTGC 1 cut(s) 442
BmiI GGNNCC 1 cut(s) 395
BmrI ACTGGG 1 cut(s) 272
BmuI ACTGGG 1 cut(s) 272
Bpu10I CCTNAGC 1 cut(s) 188
BsaHI GRCGYC 1 cut(s) 171
Bse1I ACTGG 2 cut(s) 230, 278
Bse21I CCTNAGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 102
BseMII CTCAG 2 cut(s) 9, 202
BseNI ACTGG 2 cut(s) 230, 278
BseRI GAGGAG 3 cut(s) 170, 173, 176
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 2 cut(s) 214, 541
BspCNI CTCAG 2 cut(s) 10, 201
BspLI GGNNCC 1 cut(s) 395
BspMI ACCTGC 1 cut(s) 442
BsrI ACTGG 2 cut(s) 230, 278
BssMI GATC 2 cut(s) 214, 541
BssNI GRCGYC 1 cut(s) 171
Bst6I CTCTTC 2 cut(s) 121, 537
BstACI GRCGYC 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 229
BstC8I GCNNGC 2 cut(s) 270, 357
BstDEI CTNAG 2 cut(s) 18, 188
BstEII GGTNACC 1 cut(s) 368
BstF5I GGATG 1 cut(s) 102
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 2 cut(s) 194, 355
BstKTI GATC 2 cut(s) 217, 544
BstMBI GATC 2 cut(s) 214, 541
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstPI GGTNACC 1 cut(s) 368
Bsu36I CCTNAGG 1 cut(s) 18
BtsCI GGATG 1 cut(s) 102
BtsIMutI CAGTG 2 cut(s) 223, 259
BveI ACCTGC 1 cut(s) 442
Cac8I GCNNGC 2 cut(s) 270, 357
CfoI GCGC 2 cut(s) 194, 355
CseI GACGC 1 cut(s) 179
Csp6I GTAC 1 cut(s) 466
CviAII CATG 4 cut(s) 93, 265, 399, 476
CviJI RGCY 5 cut(s) 243, 340, 429, 480, 486
CviKI_1 RGCY 5 cut(s) 243, 340, 429, 480, 486
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 2 cut(s) 18, 188
DpnI GATC 2 cut(s) 216, 543
DpnII GATC 2 cut(s) 214, 541
Eam1104I CTCTTC 2 cut(s) 121, 537
EarI CTCTTC 2 cut(s) 121, 537
Eco24I GRGCYC 1 cut(s) 342
Eco47III AGCGCT 1 cut(s) 193
Eco81I CCTNAGG 1 cut(s) 18
Eco91I GGTNACC 1 cut(s) 368
EcoO65I GGTNACC 1 cut(s) 368
EcoRI GAATTC 1 cut(s) 248
EcoT38I GRGCYC 1 cut(s) 342
FaeI CATG 4 cut(s) 96, 268, 402, 479
FalI AAGNNNNNCTT 2 cut(s) 464, 496
FatI CATG 4 cut(s) 92, 264, 398, 475
FauNDI CATATG 1 cut(s) 344
FbaI TGATCA 1 cut(s) 541
FokI GGATG 1 cut(s) 109
FriOI GRGCYC 1 cut(s) 342
FspBI CTAG 3 cut(s) 80, 314, 426
GlaI GCGC 2 cut(s) 193, 354
HaeII RGCGCY 1 cut(s) 195
HgaI GACGC 1 cut(s) 179
HhaI GCGC 2 cut(s) 194, 355
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 4 cut(s) 96, 268, 402, 479
Hin6I GCGC 2 cut(s) 192, 353
HinP1I GCGC 2 cut(s) 192, 353
HinfI GANTC 4 cut(s) 36, 152, 491, 529
Hpy188I TCNGA 4 cut(s) 7, 214, 310, 326
Hpy188III TCNNGA 2 cut(s) 17, 536
Hpy99I CGWCG 2 cut(s) 173, 209
HpyAV CCTTC 1 cut(s) 130
HpyCH4IV ACGT 2 cut(s) 207, 301
HpyCH4V TGCA 4 cut(s) 87, 223, 232, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpyF3I CTNAG 2 cut(s) 18, 188
HpySE526I ACGT 2 cut(s) 207, 301
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 4 cut(s) 96, 268, 402, 479
HspAI GCGC 2 cut(s) 192, 353
Ksp22I TGATCA 1 cut(s) 541
Kzo9I GATC 2 cut(s) 214, 541
LpnPI CCDG 8 cut(s) 30, 53, 211, 258, 291, 351, 369, 447
MaeI CTAG 3 cut(s) 80, 314, 426
MaeII ACGT 2 cut(s) 207, 301
MaeIII GTNAC 5 cut(s) 99, 280, 332, 368, 526
MalI GATC 2 cut(s) 216, 543
MboI GATC 2 cut(s) 214, 541
MboII GAAGA 2 cut(s) 108, 524
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 3 cut(s) 248, 387, 522
MlyI GAGTC 2 cut(s) 146, 523
MmeI TCCRAC 2 cut(s) 180, 304
MseI TTAA 1 cut(s) 386
MslI CAYNNNNRTG 1 cut(s) 501
MwoI GCNNNNNNNGC 1 cut(s) 229
NdeI CATATG 1 cut(s) 344
NdeII GATC 2 cut(s) 214, 541
NlaIII CATG 4 cut(s) 96, 268, 402, 479
NlaIV GGNNCC 1 cut(s) 395
NmuCI GTSAC 3 cut(s) 99, 280, 526
PaqCI CACCTGC 1 cut(s) 442
PfeI GAWTC 2 cut(s) 36, 491
PflFI GACNNNGTC 1 cut(s) 278
PleI GAGTC 2 cut(s) 146, 523
PpsI GAGTC 2 cut(s) 146, 523
PspEI GGTNACC 1 cut(s) 368
PspN4I GGNNCC 1 cut(s) 395
PsyI GACNNNGTC 1 cut(s) 278
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
RseI CAYNNNNRTG 1 cut(s) 501
SaqAI TTAA 1 cut(s) 386
Sau3AI GATC 2 cut(s) 214, 541
SchI GAGTC 2 cut(s) 146, 523
SduI GDGCHC 1 cut(s) 342
SetI ASST 8 cut(s) 50, 180, 210, 304, 321, 436, 449, 516
SmiMI CAYNNNNRTG 1 cut(s) 501
Sse9I AATT 3 cut(s) 248, 387, 522
SspMI CTAG 3 cut(s) 80, 314, 426
TaiI ACGT 2 cut(s) 210, 304
TaqI TCGA 1 cut(s) 150
TasI AATT 3 cut(s) 248, 387, 522
TatI WGTACW 1 cut(s) 465
TfiI GAWTC 2 cut(s) 36, 491
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TscAI CASTG 2 cut(s) 230, 259
TseFI GTSAC 3 cut(s) 99, 280, 526
Tsp45I GTSAC 3 cut(s) 99, 280, 526
TspDTI ATGAA 1 cut(s) 112
TspRI CASTG 2 cut(s) 230, 259
Tth111I GACNNNGTC 1 cut(s) 278
XapI RAATTY 1 cut(s) 248
XspI CTAG 3 cut(s) 80, 314, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.