MD03G1028400.v1.1

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000068
Physical Location & Seq
Forward (+)
2329758 .. 2330957
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1028400.v1.1.491

Sequence Viewer

Length: 1200 bp
ATGGCTCACAATTTGCCTGAGGAAATCATACATGATATACTATCTAGACTACCGCCTAAATCTTTGATCAGATGCACCTTGGTGTGCAAGGCATGGAGGTCCACGATAAAAAATCCCAGCTTTATTCCCTCCCACCTCAACCGTACAATCTATCTTAATAACCAGTTTGGCACCCACCTCCTCCTACTCCACTGTGTTTCTAGAGCTATTCTTTCCAGCAGCGTCAACATTTGGCTTGACGAGCCAAGGGAGAAGCATTGCAATTTGCACTATGACAACCATGCTTTTGATGAGTACTGCAAGCTAGAATTTCCAATCATTCCCAACATGAATAAATTTCTTCGCGTGGTTGGAGTTTGTAATGGGCTGGTGTGCCTTGCCGTTGATAACGACCGTTTAGGTTACATATGCATGTTATGCAACCCGTCTATAAGAAAGTCCATGACACTTCCGAAGCCTCATCTATCCTTCGAGACCATTGGCCCGTACGATGCTTATATTGGTTTTGGTTTTGACGCTGTGACTAATGACTACAAGGTTGTGAGACTTATCACTGAGCACCGTGAAGAGCCGAATACTTTTTATGAGGTTTATTCACTAGCTGGAGGCTATTGGAGTGATCCTCGTTCTCTAGATCACGTATGTGAAGTTACAGATCCTCATAAACCCCCGGCTTTTGTTAATGGTGCTATTCATTTTAAGGCATTCTACCGTTCGACAAATGGTGGTTTTGAATGGTTCATTTTGGCGTTTGACGTGGGCAGCAATACATTTCGCAGGATAATGGCACCGACGGATTTTGCAGCCTCAGCGTTAACGCAAGTGTCTATATCAGGTGACGGGAAATCTATTGCTATATTCAACCTTTGCCAGTCATTTCTTGATGGCACATATCTTGATATATGGGTGATGAAAGAGTATGGCATGGAAGAGTCATGGACCAAACTGACAACTCCATGTCCACCAGATATACAAAGAGAAATTCCCTACAAGCCATTATGTTTTAGGAAGAGTGGTGATGTAGTGTTGGTACCGGATGGTCATCCTATTTATTATGGTGATCCGTATGGAATAGTTTCTCTAGACCCTGTGAGCAAGCAATTCAAAAGTCTTGGATTTCTTGATTGCGAATATTACTATGTTGAATCTTATGTTGAGAGCCTCGTCTTACTCGACAAGACCGATACAGTTTCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

400

Amino Acids

45.47

Weight (kDa)

5.86

Isoelectric Point (pI)

33.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 41 8.3e-13 F-box domain
F-box-like PF12937 4 - 40 4.2e-12 F-box-like
FBA_3 PF08268 109 - 373 1.2e-22 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 115 - 313 3.1e-06 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 117 - 389 7.1e-20 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1030
AccB1I GGYRCC 3 cut(s) 170, 787, 1030
AccII CGCG 1 cut(s) 345
AciI CCGC 1 cut(s) 53
AclWI GGATC 3 cut(s) 614, 650, 1055
AcsI RAATTY 3 cut(s) 308, 335, 981
AfaI GTAC 4 cut(s) 145, 296, 488, 1032
AgsI TTSAA 4 cut(s) 734, 862, 1105, 1145
AjiI CACGTC 1 cut(s) 757
AleI CACNNNNGTG 2 cut(s) 80, 642
AluBI AGCT 4 cut(s) 120, 206, 304, 602
AluI AGCT 4 cut(s) 120, 206, 304, 602
Alw21I GWGCWC 1 cut(s) 561
Alw26I GTCTC 2 cut(s) 467, 538
AlwI GGATC 3 cut(s) 614, 650, 1055
AoxI GGCC 1 cut(s) 481
ApeKI GCWGC 3 cut(s) 219, 762, 803
ApoI RAATTY 3 cut(s) 308, 335, 981
Asp700I GAANNNNTTC 1 cut(s) 1075
Asp718I GGTACC 1 cut(s) 1030
AspS9I GGNCC 3 cut(s) 99, 482, 939
AsuC2I CCSGG 1 cut(s) 671
AsuHPI GGTGA 4 cut(s) 848, 919, 1028, 1070
AvaII GGWCC 2 cut(s) 99, 939
AxyI CCTNAGG 1 cut(s) 18
BanI GGYRCC 3 cut(s) 170, 787, 1030
Bbv12I GWGCWC 1 cut(s) 561
BbvCI CCTCAGC 1 cut(s) 808
BbvI GCAGC 3 cut(s) 231, 774, 815
BccI CCATC 2 cut(s) 878, 1031
BceAI ACGGC 1 cut(s) 365
BclI TGATCA 1 cut(s) 66
BcnI CCSGG 1 cut(s) 671
BcoDI GTCTC 2 cut(s) 467, 538
BfaI CTAG 6 cut(s) 45, 201, 305, 599, 632, 1082
BisI GCNGC 3 cut(s) 220, 763, 804
BlsI GCNGC 3 cut(s) 221, 764, 805
BmcAI AGTACT 1 cut(s) 296
Bme1390I CCNGG 1 cut(s) 671
Bme18I GGWCC 2 cut(s) 99, 939
BmgBI CACGTC 1 cut(s) 757
BmgT120I GGNCC 3 cut(s) 99, 482, 939
BmiI GGNNCC 3 cut(s) 172, 789, 1032
BmrFI CCNGG 1 cut(s) 671
BmsI GCATC 2 cut(s) 62, 481
BplI GAGNNNNNCTC 2 cut(s) 607, 639
BpmI CTGGAG 1 cut(s) 624
Bpu10I CCTNAGC 1 cut(s) 808
BpuMI CCSGG 1 cut(s) 671
BsaAI YACGTR 1 cut(s) 640
BsaBI GATNNNNATC 1 cut(s) 1041
BsaI GGTCTC 1 cut(s) 467
BsaJI CCNNGG 3 cut(s) 78, 245, 669
BsaWI WCCGGW 1 cut(s) 1033
Bse1I ACTGG 2 cut(s) 163, 871
Bse21I CCTNAGG 1 cut(s) 18
Bse3DI GCAATG 1 cut(s) 256
Bse8I GATNNNNATC 1 cut(s) 1041
BseDI CCNNGG 3 cut(s) 78, 245, 669
BseGI GGATG 2 cut(s) 1042, 1042
BseJI GATNNNNATC 1 cut(s) 1041
BseMI GCAATG 1 cut(s) 256
BseMII CTCAG 3 cut(s) 9, 546, 822
BseNI ACTGG 2 cut(s) 163, 871
BseRI GAGGAG 1 cut(s) 170
BseXI GCAGC 3 cut(s) 231, 774, 815
BseYI CCCAGC 1 cut(s) 116
Bsh1236I CGCG 1 cut(s) 345
Bsh1285I CGRYCG 1 cut(s) 394
BshFI GGCC 1 cut(s) 483
BshNI GGYRCC 3 cut(s) 170, 787, 1030
BsiEI CGRYCG 1 cut(s) 394
BsiHKAI GWGCWC 1 cut(s) 561
BsiSI CCGG 2 cut(s) 671, 1034
BsiWI CGTACG 1 cut(s) 486
BsmAI GTCTC 2 cut(s) 467, 538
BsmI GAATGC 1 cut(s) 704
BsnI GGCC 1 cut(s) 483
Bso31I GGTCTC 1 cut(s) 467
Bsp1286I GDGCHC 1 cut(s) 561
Bsp143I GATC 5 cut(s) 66, 619, 634, 655, 1060
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 483
BspCNI CTCAG 3 cut(s) 10, 547, 821
BspFNI CGCG 1 cut(s) 345
BspLI GGNNCC 3 cut(s) 172, 789, 1032
BspPI GGATC 3 cut(s) 614, 650, 1055
BspQI GCTCTTC 1 cut(s) 561
BspT107I GGYRCC 3 cut(s) 170, 787, 1030
BspTNI GGTCTC 1 cut(s) 467
BsrDI GCAATG 1 cut(s) 256
BsrI ACTGG 2 cut(s) 163, 871
BssECI CCNNGG 3 cut(s) 78, 245, 669
BssMI GATC 5 cut(s) 66, 619, 634, 655, 1060
BssT1I CCWWGG 2 cut(s) 78, 245
Bst4CI ACNGT 6 cut(s) 143, 194, 395, 563, 713, 1189
Bst6I CTCTTC 3 cut(s) 561, 924, 1004
BstAPI GCANNNNNTGC 1 cut(s) 417
BstBAI YACGTR 1 cut(s) 640
BstC8I GCNNGC 2 cut(s) 302, 1097
BstDEI CTNAG 3 cut(s) 18, 555, 808
BstF5I GGATG 2 cut(s) 1042, 1042
BstFNI CGCG 1 cut(s) 345
BstKTI GATC 5 cut(s) 69, 622, 637, 658, 1063
BstMAI GTCTC 2 cut(s) 467, 538
BstMBI GATC 5 cut(s) 66, 619, 634, 655, 1060
BstMCI CGRYCG 1 cut(s) 394
BstMWI GCNNNNNNNGC 3 cut(s) 241, 417, 809
BstNSI RCATGY 1 cut(s) 415
BstSCI CCNGG 1 cut(s) 669
BstUI CGCG 1 cut(s) 345
BstV1I GCAGC 3 cut(s) 231, 774, 815
BstX2I RGATCY 1 cut(s) 655
BstYI RGATCY 1 cut(s) 655
Bsu36I CCTNAGG 1 cut(s) 18
BsuRI GGCC 1 cut(s) 483
BtrI CACGTC 1 cut(s) 757
BtsCI GGATG 2 cut(s) 1042, 1042
BtsIMutI CAGTG 2 cut(s) 190, 552
Cac8I GCNNGC 2 cut(s) 302, 1097
Cfr13I GGNCC 3 cut(s) 99, 482, 939
CseI GACGC 2 cut(s) 211, 524
Csp6I GTAC 4 cut(s) 144, 295, 487, 1031
CviAII CATG 9 cut(s) 32, 93, 281, 328, 412, 442, 925, 936, 957
CviQI GTAC 4 cut(s) 144, 295, 487, 1031
DdeI CTNAG 3 cut(s) 18, 555, 808
DpnI GATC 5 cut(s) 68, 621, 636, 657, 1062
DpnII GATC 5 cut(s) 66, 619, 634, 655, 1060
Eam1104I CTCTTC 3 cut(s) 561, 924, 1004
EarI CTCTTC 3 cut(s) 561, 924, 1004
Eco130I CCWWGG 2 cut(s) 78, 245
Eco31I GGTCTC 1 cut(s) 467
Eco47I GGWCC 2 cut(s) 99, 939
Eco81I CCTNAGG 1 cut(s) 18
EcoT14I CCWWGG 2 cut(s) 78, 245
EcoT22I ATGCAT 1 cut(s) 413
ErhI CCWWGG 2 cut(s) 78, 245
FaeI CATG 9 cut(s) 35, 96, 284, 331, 415, 445, 928, 939, 960
FatI CATG 9 cut(s) 31, 92, 280, 327, 411, 441, 924, 935, 956
FauNDI CATATG 1 cut(s) 407
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 3 cut(s) 220, 763, 804
FokI GGATG 2 cut(s) 1029, 1049
Fsp4HI GCNGC 3 cut(s) 220, 763, 804
FspBI CTAG 6 cut(s) 45, 201, 305, 599, 632, 1082
GluI GCNGC 3 cut(s) 220, 763, 804
GsaI CCCAGC 1 cut(s) 120
GsuI CTGGAG 1 cut(s) 624
HaeIII GGCC 1 cut(s) 483
HapII CCGG 2 cut(s) 671, 1034
HgaI GACGC 2 cut(s) 211, 524
Hin1II CATG 9 cut(s) 35, 96, 284, 331, 415, 445, 928, 939, 960
HincII GTYRAC 2 cut(s) 226, 816
HindII GTYRAC 2 cut(s) 226, 816
HinfI GANTC 2 cut(s) 932, 1145
HpaI GTTAAC 1 cut(s) 816
HpaII CCGG 2 cut(s) 671, 1034
HphI GGTGA 4 cut(s) 848, 919, 1028, 1070
Hpy166II GTNNAC 4 cut(s) 102, 226, 816, 962
Hpy188I TCNGA 2 cut(s) 71, 453
Hpy188III TCNNGA 8 cut(s) 45, 201, 472, 632, 881, 896, 1082, 1121
Hpy8I GTNNAC 4 cut(s) 102, 226, 816, 962
Hpy99I CGWCG 1 cut(s) 796
HpyAV CCTTC 1 cut(s) 478
HpyCH4III ACNGT 6 cut(s) 143, 194, 395, 563, 713, 1189
HpyCH4IV ACGT 2 cut(s) 639, 756
HpyCH4V TGCA 8 cut(s) 75, 87, 261, 268, 300, 411, 420, 803
HpyF10VI GCNNNNNNNGC 3 cut(s) 241, 417, 809
HpyF3I CTNAG 3 cut(s) 18, 555, 808
HpySE526I ACGT 2 cut(s) 639, 756
Hsp92II CATG 9 cut(s) 35, 96, 284, 331, 415, 445, 928, 939, 960
KpnI GGTACC 1 cut(s) 1034
Ksp22I TGATCA 1 cut(s) 66
KspAI GTTAAC 1 cut(s) 816
Kzo9I GATC 5 cut(s) 66, 619, 634, 655, 1060
LguI GCTCTTC 1 cut(s) 561
Lsp1109I GCAGC 3 cut(s) 231, 774, 815
LweI GCATC 2 cut(s) 62, 481
MaeI CTAG 6 cut(s) 45, 201, 305, 599, 632, 1082
MaeII ACGT 2 cut(s) 639, 756
MaeIII GTNAC 4 cut(s) 401, 520, 649, 836
MalI GATC 5 cut(s) 68, 621, 636, 657, 1062
MboI GATC 5 cut(s) 66, 619, 634, 655, 1060
MboII GAAGA 4 cut(s) 332, 578, 941, 1021
MflI RGATCY 1 cut(s) 655
MhlI GDGCHC 1 cut(s) 561
MluCI AATT 6 cut(s) 10, 262, 308, 335, 981, 1100
MlyI GAGTC 1 cut(s) 941
MmeI TCCRAC 1 cut(s) 331
Mph1103I ATGCAT 1 cut(s) 413
MroXI GAANNNNTTC 1 cut(s) 1075
MseI TTAA 4 cut(s) 156, 681, 699, 815
MslI CAYNNNNRTG 3 cut(s) 80, 410, 642
MspI CCGG 2 cut(s) 671, 1034
MspR9I CCNGG 1 cut(s) 671
Mva1269I GAATGC 1 cut(s) 704
MvnI CGCG 1 cut(s) 345
MwoI GCNNNNNNNGC 3 cut(s) 241, 417, 809
NciI CCSGG 1 cut(s) 671
NdeI CATATG 1 cut(s) 407
NdeII GATC 5 cut(s) 66, 619, 634, 655, 1060
NlaIII CATG 9 cut(s) 35, 96, 284, 331, 415, 445, 928, 939, 960
NlaIV GGNNCC 3 cut(s) 172, 789, 1032
NmuCI GTSAC 2 cut(s) 520, 836
NsiI ATGCAT 1 cut(s) 413
NspI RCATGY 1 cut(s) 415
OliI CACNNNNGTG 2 cut(s) 80, 642
PciSI GCTCTTC 1 cut(s) 561
PcsI WCGNNNNNNNCGW 2 cut(s) 1170, 1179
PctI GAATGC 1 cut(s) 704
PdmI GAANNNNTTC 1 cut(s) 1075
PfeI GAWTC 1 cut(s) 1145
Pfl23II CGTACG 1 cut(s) 486
PkrI GCNGC 3 cut(s) 221, 764, 805
PleI GAGTC 1 cut(s) 940
PpsI GAGTC 1 cut(s) 940
Ppu21I YACGTR 1 cut(s) 640
PspFI CCCAGC 1 cut(s) 116
PspLI CGTACG 1 cut(s) 486
PspN4I GGNNCC 3 cut(s) 172, 789, 1032
PspPI GGNCC 3 cut(s) 99, 482, 939
PsuI RGATCY 1 cut(s) 655
RsaI GTAC 4 cut(s) 145, 296, 488, 1032
RsaNI GTAC 4 cut(s) 144, 295, 487, 1031
RseI CAYNNNNRTG 3 cut(s) 80, 410, 642
SapI GCTCTTC 1 cut(s) 561
SaqAI TTAA 4 cut(s) 156, 681, 699, 815
SatI GCNGC 3 cut(s) 220, 763, 804
Sau3AI GATC 5 cut(s) 66, 619, 634, 655, 1060
Sau96I GGNCC 3 cut(s) 99, 482, 939
ScaI AGTACT 1 cut(s) 296
SchI GAGTC 1 cut(s) 941
ScrFI CCNGG 1 cut(s) 671
SduI GDGCHC 1 cut(s) 561
SfaNI GCATC 2 cut(s) 62, 481
SinI GGWCC 2 cut(s) 99, 939
SmiMI CAYNNNNRTG 3 cut(s) 80, 410, 642
Sse9I AATT 6 cut(s) 10, 262, 308, 335, 981, 1100
SsiI CCGC 1 cut(s) 53
SspI AATATT 1 cut(s) 1133
SspMI CTAG 6 cut(s) 45, 201, 305, 599, 632, 1082
StyD4I CCNGG 1 cut(s) 669
StyI CCWWGG 2 cut(s) 78, 245
TaaI ACNGT 6 cut(s) 143, 194, 395, 563, 713, 1189
TaiI ACGT 2 cut(s) 642, 759
TaqI TCGA 3 cut(s) 471, 716, 1173
TaqII GACCGA 1 cut(s) 1196
TasI AATT 6 cut(s) 10, 262, 308, 335, 981, 1100
TatI WGTACW 1 cut(s) 294
TfiI GAWTC 1 cut(s) 1145
Tru1I TTAA 4 cut(s) 156, 681, 699, 815
Tru9I TTAA 4 cut(s) 156, 681, 699, 815
TscAI CASTG 2 cut(s) 197, 559
TseFI GTSAC 2 cut(s) 520, 836
TseI GCWGC 3 cut(s) 219, 762, 803
Tsp45I GTSAC 2 cut(s) 520, 836
TspDTI ATGAA 4 cut(s) 344, 683, 730, 926
TspGWI ACGGA 2 cut(s) 809, 1053
TspRI CASTG 2 cut(s) 197, 559
VpaK11BI GGWCC 2 cut(s) 99, 939
XapI RAATTY 3 cut(s) 308, 335, 981
XbaI TCTAGA 4 cut(s) 44, 200, 631, 1081
XceI RCATGY 1 cut(s) 415
XmnI GAANNNNTTC 1 cut(s) 1075
XspI CTAG 6 cut(s) 45, 201, 305, 599, 632, 1082
ZrmI AGTACT 1 cut(s) 296
Zsp2I ATGCAT 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.