Rmu_sc0004800.1_g000015

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004800.1
Physical Location & Seq
Forward (+)
102372 .. 102983
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004800.1_g000015.1.cds

Sequence Viewer

Length: 612 bp
atgttggattgtgatgatatcaacgatgaatataccaagcgttgtgtaattccaacttctgacattaaagcagtttctccaatctatgaaggaagagaaatcaatgtggatcaacaaaatttctatccagttggaacttgcaacggcctcatcagcctggtttgtcatgatatggaaaaaccaatttcaataccaataatatggaatccttgtgttagaaagtttttggttcttcctagtccaagcttttcgccctacaaggttgcttttttcctttatgagttaggctatgattcacataacaatgacattaagcttgtacaaattgtggttccaaaatttcaagatgaccaaacaccatgtacctttcaagtgatttcattactcaggggctcttggaaggatcttaacgctcctgcagactttaaaccttttcctaatgatcttacaactgtggagattagtggtgctttgcattggatttgtgggaaactgtatactgagatcaatgaaagcacggtcattgtgacctttaacttgtctagtgaattatttgggaagatgaagattcctaaagctttgaaaaaagattcaactaagaaatcttgttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

203

Amino Acids

22.98

Weight (kDa)

5.62

Isoelectric Point (pI)

35.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 497
AclWI GGATC 2 cut(s) 117, 411
AcsI RAATTY 2 cut(s) 118, 338
AfaI GTAC 2 cut(s) 321, 364
AgsI TTSAA 5 cut(s) 189, 344, 371, 583, 594
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 3 cut(s) 246, 316, 578
AluI AGCT 3 cut(s) 246, 316, 578
AlwI GGATC 2 cut(s) 117, 411
AoxI GGCC 1 cut(s) 145
ApoI RAATTY 2 cut(s) 118, 338
BanII GRGCYC 1 cut(s) 395
BceAI ACGGC 1 cut(s) 160
BciT130I CCWGG 1 cut(s) 158
BfaI CTAG 2 cut(s) 237, 543
BfmI CTRYAG 1 cut(s) 417
Bme1390I CCNGG 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 333
BmrFI CCNGG 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 128
BseBI CCWGG 1 cut(s) 158
BseMII CTCAG 2 cut(s) 400, 492
BseNI ACTGG 1 cut(s) 128
BshFI GGCC 1 cut(s) 147
BsnI GGCC 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 395
Bsp1407I TGTACA 1 cut(s) 319
Bsp143I GATC 4 cut(s) 109, 403, 442, 504
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 2 cut(s) 399, 493
BspHI TCATGA 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 333
BspMAI CTGCAG 1 cut(s) 421
BspPI GGATC 2 cut(s) 117, 411
BsrGI TGTACA 1 cut(s) 319
BsrI ACTGG 1 cut(s) 128
BssMI GATC 4 cut(s) 109, 403, 442, 504
BssNAI GTATAC 1 cut(s) 498
Bst1107I GTATAC 1 cut(s) 498
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 3 cut(s) 454, 495, 520
Bst6I CTCTTC 1 cut(s) 88
BstAUI TGTACA 1 cut(s) 319
BstDEI CTNAG 3 cut(s) 386, 501, 597
BstKTI GATC 4 cut(s) 112, 406, 445, 507
BstMBI GATC 4 cut(s) 109, 403, 442, 504
BstMWI GCNNNNNNNGC 1 cut(s) 153
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 156
BstSFI CTRYAG 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 403
BstXI CCANNNNNNTGG 1 cut(s) 201
BstYI RGATCY 1 cut(s) 403
BstZ17I GTATAC 1 cut(s) 498
BsuRI GGCC 1 cut(s) 147
CciI TCATGA 1 cut(s) 166
Csp6I GTAC 2 cut(s) 320, 363
CviAII CATG 2 cut(s) 167, 360
CviJI RGCY 7 cut(s) 147, 156, 246, 288, 316, 393, 578
CviKI_1 RGCY 7 cut(s) 147, 156, 246, 288, 316, 393, 578
CviQI GTAC 2 cut(s) 320, 363
DdeI CTNAG 3 cut(s) 386, 501, 597
DpnI GATC 4 cut(s) 111, 405, 444, 506
DpnII GATC 4 cut(s) 109, 403, 442, 504
DraI TTTAAA 1 cut(s) 427
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 395
Eco32I GATATC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 156
EcoRV GATATC 1 cut(s) 19
EcoT38I GRGCYC 1 cut(s) 395
FaeI CATG 2 cut(s) 170, 363
FatI CATG 2 cut(s) 166, 359
FblI GTMKAC 1 cut(s) 497
FriOI GRGCYC 1 cut(s) 395
FspBI CTAG 2 cut(s) 237, 543
HaeIII GGCC 1 cut(s) 147
Hin1II CATG 2 cut(s) 170, 363
HindIII AAGCTT 3 cut(s) 244, 314, 576
HinfI GANTC 4 cut(s) 205, 293, 568, 590
Hpy166II GTNNAC 1 cut(s) 498
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 2 cut(s) 167, 344
Hpy8I GTNNAC 1 cut(s) 498
HpyAV CCTTC 2 cut(s) 83, 394
HpyCH4III ACNGT 3 cut(s) 454, 495, 520
HpyCH4V TGCA 3 cut(s) 141, 419, 475
HpyF10VI GCNNNNNNNGC 1 cut(s) 153
HpyF3I CTNAG 3 cut(s) 386, 501, 597
Hsp92II CATG 2 cut(s) 170, 363
Kzo9I GATC 4 cut(s) 109, 403, 442, 504
LmnI GCTCC 1 cut(s) 418
LpnPI CCDG 5 cut(s) 141, 143, 170, 373, 429
MaeI CTAG 2 cut(s) 237, 543
MaeIII GTNAC 1 cut(s) 526
MalI GATC 4 cut(s) 111, 405, 444, 506
MboI GATC 4 cut(s) 109, 403, 442, 504
MboII GAAGA 4 cut(s) 105, 224, 571, 577
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 1 cut(s) 395
MluCI AATT 6 cut(s) 48, 118, 183, 324, 338, 548
MmeI TCCRAC 2 cut(s) 77, 112
MnlI CCTC 1 cut(s) 158
MseI TTAA 6 cut(s) 66, 312, 408, 426, 534, 610
MslI CAYNNNNRTG 1 cut(s) 303
MspR9I CCNGG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 153
NdeII GATC 4 cut(s) 109, 403, 442, 504
NlaIII CATG 2 cut(s) 170, 363
NlaIV GGNNCC 1 cut(s) 333
NmuCI GTSAC 1 cut(s) 526
PagI TCATGA 1 cut(s) 166
PfeI GAWTC 4 cut(s) 205, 293, 568, 590
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 333
PstI CTGCAG 1 cut(s) 421
PsuI RGATCY 1 cut(s) 403
RsaI GTAC 2 cut(s) 321, 364
RsaNI GTAC 2 cut(s) 320, 363
RseI CAYNNNNRTG 1 cut(s) 303
SaqAI TTAA 6 cut(s) 66, 312, 408, 426, 534, 610
Sau3AI GATC 4 cut(s) 109, 403, 442, 504
ScrFI CCNGG 1 cut(s) 158
SduI GDGCHC 1 cut(s) 395
SetI ASST 7 cut(s) 248, 264, 318, 368, 433, 533, 580
SfcI CTRYAG 1 cut(s) 417
SmiMI CAYNNNNRTG 1 cut(s) 303
Sse9I AATT 6 cut(s) 48, 118, 183, 324, 338, 548
SspMI CTAG 2 cut(s) 237, 543
StyD4I CCNGG 1 cut(s) 156
TaaI ACNGT 3 cut(s) 454, 495, 520
TasI AATT 6 cut(s) 48, 118, 183, 324, 338, 548
TatI WGTACW 1 cut(s) 319
TfiI GAWTC 4 cut(s) 205, 293, 568, 590
Tru1I TTAA 6 cut(s) 66, 312, 408, 426, 534, 610
Tru9I TTAA 6 cut(s) 66, 312, 408, 426, 534, 610
TseFI GTSAC 1 cut(s) 526
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 5 cut(s) 42, 102, 369, 525, 578
XapI RAATTY 2 cut(s) 118, 338
XmiI GTMKAC 1 cut(s) 497
XspI CTAG 2 cut(s) 237, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.