Rorug05G0337600

F-box kelch-repeat protein At3g23880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000068
Physical Location & Seq
Reverse (-)
40993132 .. 40994772
1641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0337600.1

Sequence Viewer

Length: 1641 bp
ATGGAGGAGGAACTTGGAGATCTGGTGAGGAATCTAGTTTTGACGGAGGATGAGGCACAAGAAATTGTGTTACCAGATGCGCCAGGAAGCTGGCGGCAGAGGAAATTCTTGATTGTTGGCCAATTATTGACCAACAAACCCTACCAGAAGGAGGCGTTAATAGGTACCATGCGTTCACTCTGGACGCCGAAGAGGAGGTTGGGAGAGAAACCTAGGGTTTCGGCGTGCGCTTTAGAAGGCAGTGAGAGGATTGTGTTTTCTTTCACACATGAATATGATCGCAACCGAGTTTTGTGGGGTTGTCCCTGGCATTTTGATAAGGCTCTTTTTGCGGTGGTAGCGACTGATGGCATGGAGGATCTGCTCCGCGTCTCCCTGAACTGGCAATTCTTTTGGGTGCGTGCTTGGGGCATCCCTCCGCTATATATGGAAGAAGAAACTGGGGTTAGAATTGGGAACGCTATTGGACGGTTTGCTCGGATGGAGGAGTCAGTGCACGGGATTTATCTGGGCACAACCCTGAAAGTTCGAGTTCTTGTTGATGTGGAGAAGCCGTTACGCAGGGTTGCTTCTATAAGGCTGCCGGGCCACAAATCTGCTTCCTGTTTTGAGTTAGATTATATGAAACTCCCGAACTTCTGTCTCTATTGTGGCCGACTCAACCATGAATCAAATCGTTGTGAGTTGCACAAGTCTGGACTGATTATGGAGAAGCAGTTCGATGAATTGCTTTGTGCTGAGAAGAAGGACCGCTGGCTGCAGGCGAAGGAGGATAGGGAGAGAGCTGCGGCGGCGACACGCTTGATTAATGAGGGAAGAAGGTTTGGGTTGTTTGCCGAGGGTGGTAGAGGATGGTCCATGCGTGCGCCGGAGTTCCCTATTTCCGGGATGGTTAGAGACAGACGGGAGCTGGAGGAGGATGATGAGACAGCAGGGATGGGTAGTGAGATGGAAGTTGATGGAGCTCAGACGTGGAGGGAGGAGGAGAGTCGCTGTGGACCGAAGAAGAGGCGGCTACAGACGGCGGCGATCTCAGATCCGGATGGGCTTAATTTACGGGATGTGGAAGTAAAGTGTGTGTCAGATTTTTCGCAGGCTTTAATGGTGATTGAGAATGATTTAGGGAAGAATAAGGAGGAATCAGCGGATTCGGGGGAGAACTCTGCGCAAACTGTAACTCTGTTTGGCCGTAAAGTGTGTTTCCCGCCCAATCAAGATTCAATTGCGAAGTCAACCCTGGATGTTAATTGTGTTGGGGACTTGAATGACGTGGCTGGTGTTTTGAATTTGGGCCCAAAAGTTACGGGGCCTAATGAGGTGTTTAGCTTGGAGACGGGTATTGGGCTCGAGGGGCTGAACAATGGAGGTGAGGCTAGAGAAAGTGCGACTGGGAGGAATTCTGTTGCCAAAAAGGAAACAATGTGTAAGAAAGGTTCTAGGCTGGTTGGTACTACGAGTGGGGGCCTTCAGCAGGCCGGGGGGTCCCCAAAATCTCATGGGCCTGGTCCTCAAAGAAGTGGCAGTAGAAAGAAGGGAGTGGCGGTGTCGACAAAGGTTCCTAAGATTCCTAGAGTGAGCCATGGACGTGCTCCGAAACGTTCATCCGTGATGGGTCCGGTTTTGACCCATCACGAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

546

Amino Acids

60.65

Weight (kDa)

8.17

Isoelectric Point (pI)

42.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 180 - 228 2e-07 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1167
Acc65I GGTACC 1 cut(s) 164
AccB1I GGYRCC 1 cut(s) 164
AccI GTMKAC 1 cut(s) 1547
AccII CGCG 1 cut(s) 369
AccIII TCCGGA 1 cut(s) 1039
AclI AACGTT 1 cut(s) 1597
AclWI GGATC 2 cut(s) 366, 1031
AcoI YGGCCR 3 cut(s) 118, 652, 1186
AcsI RAATTY 3 cut(s) 104, 1285, 1396
AcuI CTGAAG 1 cut(s) 1451
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 2 cut(s) 166, 1450
AfiI CCNNNNNNNGG 4 cut(s) 151, 381, 884, 1471
AgsI TTSAA 3 cut(s) 1221, 1264, 1285
AjiI CACGTC 3 cut(s) 972, 1270, 1586
AjnI CCWGG 4 cut(s) 82, 305, 1236, 1501
AjuI GAANNNNNNNTTGG 2 cut(s) 182, 214
AloI GAACNNNNNNTCC 2 cut(s) 701, 733
AluBI AGCT 5 cut(s) 90, 785, 910, 965, 1326
AluI AGCT 5 cut(s) 90, 785, 910, 965, 1326
Alw21I GWGCWC 3 cut(s) 498, 967, 1591
Alw26I GTCTC 5 cut(s) 376, 647, 891, 920, 1325
Alw44I GTGCAC 1 cut(s) 494
AlwI GGATC 2 cut(s) 366, 1031
Ama87I CYCGRG 1 cut(s) 1346
Aor13HI TCCGGA 1 cut(s) 1039
AoxI GGCC 9 cut(s) 118, 586, 652, 1186, 1291, 1307, 1462, 1473, 1499
ApaI GGGCCC 1 cut(s) 1295
ApaLI GTGCAC 1 cut(s) 494
ApeKI GCWGC 3 cut(s) 580, 757, 785
ApoI RAATTY 3 cut(s) 104, 1285, 1396
AseI ATTAAT 1 cut(s) 807
Asp700I GAANNNNTTC 1 cut(s) 716
Asp718I GGTACC 1 cut(s) 164
AspA2I CCTAGG 1 cut(s) 212
AspLEI GCGC 4 cut(s) 82, 230, 868, 1168
AsuC2I CCSGG 3 cut(s) 585, 886, 1477
AsuHPI GGTGA 3 cut(s) 37, 1117, 1379
AvaI CYCGRG 1 cut(s) 1346
AvaII GGWCC 6 cut(s) 748, 855, 998, 1482, 1505, 1613
AvrII CCTAGG 1 cut(s) 212
BaeGI GKGCMC 3 cut(s) 498, 515, 1295
BalI TGGCCA 1 cut(s) 120
BanI GGYRCC 1 cut(s) 164
BanII GRGCYC 3 cut(s) 967, 1295, 1347
BauI CACGAG 1 cut(s) 1631
Bbv12I GWGCWC 3 cut(s) 498, 967, 1591
BbvI GCAGC 3 cut(s) 567, 744, 772
BceAI ACGGC 3 cut(s) 538, 1038, 1173
BciT130I CCWGG 4 cut(s) 84, 307, 1238, 1503
BcnI CCSGG 3 cut(s) 585, 886, 1477
BcoDI GTCTC 5 cut(s) 376, 647, 891, 920, 1325
BfaI CTAG 5 cut(s) 35, 213, 1374, 1437, 1569
BfmI CTRYAG 2 cut(s) 758, 1016
BglII AGATCT 1 cut(s) 19
BisI GCNGC 8 cut(s) 95, 581, 758, 786, 789, 792, 1013, 1026
BlnI CCTAGG 1 cut(s) 212
BlsI GCNGC 8 cut(s) 96, 582, 759, 787, 790, 793, 1014, 1027
Bme1390I CCNGG 7 cut(s) 84, 307, 585, 886, 1238, 1477, 1503
Bme18I GGWCC 6 cut(s) 748, 855, 998, 1482, 1505, 1613
BmeT110I CYCGRG 1 cut(s) 1346
BmgBI CACGTC 3 cut(s) 972, 1270, 1586
BmiI GGNNCC 8 cut(s) 166, 1293, 1308, 1463, 1483, 1484, 1557, 1614
BmrFI CCNGG 7 cut(s) 84, 307, 585, 886, 1238, 1477, 1503
BmrI ACTGGG 2 cut(s) 450, 1398
BmsI GCATC 2 cut(s) 67, 420
BmuI ACTGGG 2 cut(s) 450, 1398
BpmI CTGGAG 1 cut(s) 932
BpuMI CCSGG 3 cut(s) 585, 886, 1477
BsaHI GRCGYC 1 cut(s) 185
BsaJI CCNNGG 6 cut(s) 212, 305, 837, 1236, 1476, 1579
BsaWI WCCGGW 2 cut(s) 1039, 1615
BsaXI ACNNNNNCTCC 8 cut(s) 9, 39, 539, 569, 701, 731, 1527, 1557
Bsc4I CCNNNNNNNGG 4 cut(s) 151, 381, 884, 1471
Bse1I ACTGG 3 cut(s) 386, 445, 1393
BseAI TCCGGA 1 cut(s) 1039
BseBI CCWGG 4 cut(s) 84, 307, 1238, 1503
BseDI CCNNGG 6 cut(s) 212, 305, 837, 1236, 1476, 1579
BseLI CCNNNNNNNGG 4 cut(s) 151, 381, 884, 1471
BseMII CTCAG 3 cut(s) 729, 980, 1047
BseNI ACTGG 3 cut(s) 386, 445, 1393
BseRI GAGGAG 6 cut(s) 20, 208, 500, 929, 995, 998
BseSI GKGCMC 3 cut(s) 498, 515, 1295
BseXI GCAGC 3 cut(s) 567, 744, 772
Bsh1236I CGCG 1 cut(s) 369
BshFI GGCC 9 cut(s) 120, 588, 654, 1188, 1293, 1309, 1464, 1475, 1501
BshNI GGYRCC 1 cut(s) 164
BsiHKAI GWGCWC 3 cut(s) 498, 967, 1591
BsiHKCI CYCGRG 1 cut(s) 1346
BsiSI CCGG 6 cut(s) 584, 869, 885, 1040, 1476, 1616
BslFI GGGAC 3 cut(s) 288, 1271, 1468
BslI CCNNNNNNNGG 4 cut(s) 151, 381, 884, 1471
BsmAI GTCTC 5 cut(s) 376, 647, 891, 920, 1325
BsmBI CGTCTC 2 cut(s) 376, 1325
BsmFI GGGAC 3 cut(s) 288, 1271, 1468
BsnI GGCC 9 cut(s) 120, 588, 654, 1188, 1293, 1309, 1464, 1475, 1501
BsoBI CYCGRG 1 cut(s) 1346
Bsp120I GGGCCC 1 cut(s) 1291
Bsp1286I GDGCHC 6 cut(s) 498, 515, 967, 1295, 1347, 1591
Bsp13I TCCGGA 1 cut(s) 1039
Bsp143I GATC 5 cut(s) 19, 277, 358, 1029, 1036
Bsp19I CCATGG 1 cut(s) 1579
BspANI GGCC 9 cut(s) 120, 588, 654, 1188, 1293, 1309, 1464, 1475, 1501
BspCNI CTCAG 3 cut(s) 730, 979, 1046
BspEI TCCGGA 1 cut(s) 1039
BspFNI CGCG 1 cut(s) 369
BspLI GGNNCC 8 cut(s) 166, 1293, 1308, 1463, 1483, 1484, 1557, 1614
BspMAI CTGCAG 1 cut(s) 762
BspPI GGATC 2 cut(s) 366, 1031
BspT107I GGYRCC 1 cut(s) 164
BsrI ACTGG 3 cut(s) 386, 445, 1393
BssECI CCNNGG 6 cut(s) 212, 305, 837, 1236, 1476, 1579
BssMI GATC 5 cut(s) 19, 277, 358, 1029, 1036
BssNI GRCGYC 1 cut(s) 185
BssSI CACGAG 1 cut(s) 1631
BssT1I CCWWGG 2 cut(s) 212, 1579
Bst2BI CACGAG 1 cut(s) 1631
Bst2UI CCWGG 4 cut(s) 84, 307, 1238, 1503
Bst4CI ACNGT 2 cut(s) 471, 1174
Bst6I CTCTTC 2 cut(s) 185, 1001
BstACI GRCGYC 1 cut(s) 185
BstC8I GCNNGC 8 cut(s) 92, 226, 402, 755, 762, 864, 1095, 1473
BstDEI CTNAG 4 cut(s) 738, 966, 1033, 1560
BstDSI CCRYGG 1 cut(s) 1579
BstENI CCTNNNNNAGG 1 cut(s) 1469
BstFNI CGCG 1 cut(s) 369
BstHHI GCGC 4 cut(s) 82, 230, 868, 1168
BstKTI GATC 5 cut(s) 22, 280, 361, 1032, 1039
BstMAI GTCTC 5 cut(s) 376, 647, 891, 920, 1325
BstMBI GATC 5 cut(s) 19, 277, 358, 1029, 1036
BstMWI GCNNNNNNNGC 4 cut(s) 329, 338, 791, 1351
BstNI CCWGG 4 cut(s) 84, 307, 1238, 1503
BstSCI CCNGG 7 cut(s) 82, 305, 583, 884, 1236, 1475, 1501
BstSFI CTRYAG 2 cut(s) 758, 1016
BstSLI GKGCMC 3 cut(s) 498, 515, 1295
BstUI CGCG 1 cut(s) 369
BstV1I GCAGC 3 cut(s) 567, 744, 772
BstX2I RGATCY 3 cut(s) 19, 358, 1036
BstXI CCANNNNNNTGG 1 cut(s) 90
BstYI RGATCY 3 cut(s) 19, 358, 1036
BsuRI GGCC 9 cut(s) 120, 588, 654, 1188, 1293, 1309, 1464, 1475, 1501
BtgI CCRYGG 1 cut(s) 1579
BtrI CACGTC 3 cut(s) 972, 1270, 1586
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 2 cut(s) 247, 498
Cac8I GCNNGC 8 cut(s) 92, 226, 402, 755, 762, 864, 1095, 1473
CfoI GCGC 4 cut(s) 82, 230, 868, 1168
CseI GACGC 2 cut(s) 193, 358
Csp6I GTAC 2 cut(s) 165, 1449
CviAII CATG 8 cut(s) 169, 269, 352, 665, 859, 1496, 1580, 1638
CviQI GTAC 2 cut(s) 165, 1449
DdeI CTNAG 4 cut(s) 738, 966, 1033, 1560
DpnI GATC 5 cut(s) 21, 279, 360, 1031, 1038
DpnII GATC 5 cut(s) 19, 277, 358, 1029, 1036
EaeI YGGCCR 3 cut(s) 118, 652, 1186
Eam1104I CTCTTC 2 cut(s) 185, 1001
EarI CTCTTC 2 cut(s) 185, 1001
Ecl136II GAGCTC 1 cut(s) 965
Eco130I CCWWGG 2 cut(s) 212, 1579
Eco24I GRGCYC 3 cut(s) 967, 1295, 1347
Eco47I GGWCC 6 cut(s) 748, 855, 998, 1482, 1505, 1613
Eco53kI GAGCTC 1 cut(s) 965
Eco57I CTGAAG 1 cut(s) 1451
Eco88I CYCGRG 1 cut(s) 1346
EcoICRI GAGCTC 1 cut(s) 965
EcoNI CCTNNNNNAGG 1 cut(s) 1469
EcoO109I RGGNCCY 3 cut(s) 1307, 1462, 1482
EcoRI GAATTC 1 cut(s) 1396
EcoRII CCWGG 4 cut(s) 82, 305, 1236, 1501
EcoT14I CCWWGG 2 cut(s) 212, 1579
EcoT38I GRGCYC 3 cut(s) 967, 1295, 1347
ErhI CCWWGG 2 cut(s) 212, 1579
Esp3I CGTCTC 2 cut(s) 376, 1325
FaeI CATG 8 cut(s) 172, 272, 355, 668, 862, 1499, 1583, 1641
FaqI GGGAC 3 cut(s) 288, 1271, 1468
FatI CATG 8 cut(s) 168, 268, 351, 664, 858, 1495, 1579, 1637
FauI CCCGC 1 cut(s) 1212
FblI GTMKAC 1 cut(s) 1547
Fnu4HI GCNGC 8 cut(s) 95, 581, 758, 786, 789, 792, 1013, 1026
FriOI GRGCYC 3 cut(s) 967, 1295, 1347
Fsp4HI GCNGC 8 cut(s) 95, 581, 758, 786, 789, 792, 1013, 1026
FspBI CTAG 5 cut(s) 35, 213, 1374, 1437, 1569
FspI TGCGCA 1 cut(s) 1167
GlaI GCGC 4 cut(s) 81, 229, 867, 1167
GluI GCNGC 8 cut(s) 95, 581, 758, 786, 789, 792, 1013, 1026
GsuI CTGGAG 1 cut(s) 932
HaeIII GGCC 9 cut(s) 120, 588, 654, 1188, 1293, 1309, 1464, 1475, 1501
HapII CCGG 6 cut(s) 584, 869, 885, 1040, 1476, 1616
HgaI GACGC 2 cut(s) 193, 358
HhaI GCGC 4 cut(s) 82, 230, 868, 1168
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 8 cut(s) 172, 272, 355, 668, 862, 1499, 1583, 1641
Hin6I GCGC 4 cut(s) 80, 228, 866, 1166
HinP1I GCGC 4 cut(s) 80, 228, 866, 1166
HincII GTYRAC 2 cut(s) 1233, 1548
HindII GTYRAC 2 cut(s) 1233, 1548
HinfI GANTC 9 cut(s) 31, 488, 657, 668, 988, 1139, 1148, 1217, 1564
HpaII CCGG 6 cut(s) 584, 869, 885, 1040, 1476, 1616
HphI GGTGA 3 cut(s) 37, 1117, 1379
Hpy166II GTNNAC 5 cut(s) 176, 496, 998, 1233, 1548
Hpy188I TCNGA 5 cut(s) 480, 969, 1036, 1084, 1593
Hpy188III TCNNGA 7 cut(s) 109, 181, 631, 696, 1040, 1214, 1631
Hpy8I GTNNAC 5 cut(s) 176, 496, 998, 1233, 1548
HpyAV CCTTC 7 cut(s) 142, 230, 739, 760, 813, 1475, 1525
HpyCH4III ACNGT 2 cut(s) 471, 1174
HpyCH4IV ACGT 4 cut(s) 971, 1269, 1585, 1597
HpyCH4V TGCA 3 cut(s) 496, 688, 760
HpyF10VI GCNNNNNNNGC 4 cut(s) 329, 338, 791, 1351
HpyF3I CTNAG 4 cut(s) 738, 966, 1033, 1560
HpySE526I ACGT 4 cut(s) 971, 1269, 1585, 1597
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 8 cut(s) 172, 272, 355, 668, 862, 1499, 1583, 1641
HspAI GCGC 4 cut(s) 80, 228, 866, 1166
KflI GGGWCCC 1 cut(s) 1482
Kpn2I TCCGGA 1 cut(s) 1039
KpnI GGTACC 1 cut(s) 168
Kzo9I GATC 5 cut(s) 19, 277, 358, 1029, 1036
LmnI GCTCC 4 cut(s) 369, 907, 962, 1594
Lsp1109I GCAGC 3 cut(s) 567, 744, 772
LweI GCATC 2 cut(s) 67, 420
MaeI CTAG 5 cut(s) 35, 213, 1374, 1437, 1569
MaeII ACGT 4 cut(s) 971, 1269, 1585, 1597
MaeIII GTNAC 4 cut(s) 69, 555, 1174, 1300
MalI GATC 5 cut(s) 21, 279, 360, 1031, 1038
MboI GATC 5 cut(s) 19, 277, 358, 1029, 1036
MboII GAAGA 8 cut(s) 202, 443, 446, 754, 828, 1015, 1018, 1138
MfeI CAATTG 1 cut(s) 1221
MflI RGATCY 3 cut(s) 19, 358, 1036
MhlI GDGCHC 6 cut(s) 498, 515, 967, 1295, 1347, 1591
MlsI TGGCCA 1 cut(s) 120
MluNI TGGCCA 1 cut(s) 120
MlyI GAGTC 3 cut(s) 497, 651, 997
Mox20I TGGCCA 1 cut(s) 120
MroI TCCGGA 1 cut(s) 1039
MroXI GAANNNNTTC 1 cut(s) 716
MscI TGGCCA 1 cut(s) 120
MseI TTAA 5 cut(s) 158, 807, 1050, 1100, 1245
MslI CAYNNNNRTG 2 cut(s) 273, 1584
Msp20I TGGCCA 1 cut(s) 120
MspA1I CMGCKG 2 cut(s) 753, 1145
MspI CCGG 6 cut(s) 584, 869, 885, 1040, 1476, 1616
MspR9I CCNGG 7 cut(s) 84, 307, 585, 886, 1238, 1477, 1503
MunI CAATTG 1 cut(s) 1221
MvaI CCWGG 4 cut(s) 84, 307, 1238, 1503
MvnI CGCG 1 cut(s) 369
MwoI GCNNNNNNNGC 4 cut(s) 329, 338, 791, 1351
NciI CCSGG 3 cut(s) 585, 886, 1477
NcoI CCATGG 1 cut(s) 1579
NdeII GATC 5 cut(s) 19, 277, 358, 1029, 1036
NlaIII CATG 8 cut(s) 172, 272, 355, 668, 862, 1499, 1583, 1641
NlaIV GGNNCC 8 cut(s) 166, 1293, 1308, 1463, 1483, 1484, 1557, 1614
NmeAIII GCCGAG 1 cut(s) 862
NsbI TGCGCA 1 cut(s) 1167
PaeR7I CTCGAG 1 cut(s) 1346
PdmI GAANNNNTTC 1 cut(s) 716
PfeI GAWTC 6 cut(s) 31, 668, 1139, 1148, 1217, 1564
PfoI TCCNGGA 1 cut(s) 884
PkrI GCNGC 8 cut(s) 96, 582, 759, 787, 790, 793, 1014, 1027
PleI GAGTC 3 cut(s) 496, 651, 996
PpsI GAGTC 3 cut(s) 496, 651, 996
PpuMI RGGWCCY 1 cut(s) 1482
PshBI ATTAAT 1 cut(s) 807
Psp124BI GAGCTC 1 cut(s) 967
Psp1406I AACGTT 1 cut(s) 1597
Psp5II RGGWCCY 1 cut(s) 1482
Psp6I CCWGG 4 cut(s) 82, 305, 1236, 1501
PspGI CCWGG 4 cut(s) 82, 305, 1236, 1501
PspN4I GGNNCC 8 cut(s) 166, 1293, 1308, 1463, 1483, 1484, 1557, 1614
PspOMI GGGCCC 1 cut(s) 1291
PspPPI RGGWCCY 1 cut(s) 1482
PspXI VCTCGAGB 1 cut(s) 1346
PsrI GAACNNNNNNTAC 4 cut(s) 157, 189, 1417, 1449
PstI CTGCAG 1 cut(s) 762
PsuI RGATCY 3 cut(s) 19, 358, 1036
RsaI GTAC 2 cut(s) 166, 1450
RsaNI GTAC 2 cut(s) 165, 1449
RseI CAYNNNNRTG 2 cut(s) 273, 1584
SacI GAGCTC 1 cut(s) 967
SalI GTCGAC 1 cut(s) 1546
SaqAI TTAA 5 cut(s) 158, 807, 1050, 1100, 1245
SatI GCNGC 8 cut(s) 95, 581, 758, 786, 789, 792, 1013, 1026
Sau3AI GATC 5 cut(s) 19, 277, 358, 1029, 1036
SchI GAGTC 3 cut(s) 497, 651, 997
ScrFI CCNGG 7 cut(s) 84, 307, 585, 886, 1238, 1477, 1503
SduI GDGCHC 6 cut(s) 498, 515, 967, 1295, 1347, 1591
SfaNI GCATC 2 cut(s) 67, 420
SfcI CTRYAG 2 cut(s) 758, 1016
Sfr274I CTCGAG 1 cut(s) 1346
SinI GGWCC 6 cut(s) 748, 855, 998, 1482, 1505, 1613
SlaI CTCGAG 1 cut(s) 1346
SmiMI CAYNNNNRTG 2 cut(s) 273, 1584
SmlI CTYRAG 1 cut(s) 1346
SmoI CTYRAG 1 cut(s) 1346
SspMI CTAG 5 cut(s) 35, 213, 1374, 1437, 1569
SstI GAGCTC 1 cut(s) 967
StyD4I CCNGG 7 cut(s) 82, 305, 583, 884, 1236, 1475, 1501
StyI CCWWGG 2 cut(s) 212, 1579
TaaI ACNGT 2 cut(s) 471, 1174
TaiI ACGT 4 cut(s) 974, 1272, 1588, 1600
TaqI TCGA 4 cut(s) 529, 720, 1347, 1547
TaqII GACCGA 1 cut(s) 1015
TauI GCSGC 5 cut(s) 97, 791, 794, 1015, 1028
TfiI GAWTC 6 cut(s) 31, 668, 1139, 1148, 1217, 1564
Tru1I TTAA 5 cut(s) 158, 807, 1050, 1100, 1245
Tru9I TTAA 5 cut(s) 158, 807, 1050, 1100, 1245
TscAI CASTG 2 cut(s) 247, 498
TseI GCWGC 3 cut(s) 580, 757, 785
TspDTI ATGAA 5 cut(s) 285, 638, 681, 738, 1590
TspGWI ACGGA 2 cut(s) 59, 1594
TspRI CASTG 2 cut(s) 247, 498
VneI GTGCAC 1 cut(s) 494
VpaK11BI GGWCC 6 cut(s) 748, 855, 998, 1482, 1505, 1613
VspI ATTAAT 1 cut(s) 807
XagI CCTNNNNNAGG 1 cut(s) 1469
XapI RAATTY 3 cut(s) 104, 1285, 1396
XhoI CTCGAG 1 cut(s) 1346
XmaJI CCTAGG 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 1547
XmnI GAANNNNTTC 1 cut(s) 716
XspI CTAG 5 cut(s) 35, 213, 1374, 1437, 1569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.