pycom11g23890

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000068
Physical Location & Seq
Forward (+)
26865925 .. 26866308
384 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g23890.1

Sequence Viewer

Length: 384 bp
ATGGTGCCACATGAGTTGAGAAGAAAAGCTTTGTCTGTGTCGAGATACGAAGAGTCTCTTGCTTTGTTTGAGAGAGAGTATGAAGTTTCGGATGGATCGAATACTATTACTCGTGTTCACATGTGGATCATGAAAGAGTACGGTGTTGCTGAATCGTGGACTAAATTACTGAGTGCGTGCCTGGAAGGAAGTCTAACAGGGCCGTTTGGTGTTAGAAAGAGTGGTGAAGTAGTGTTCAGAATGCTGGGCGGAGTGCTTGTTTTGGTGGATCCTGAAACCGAACAAGTTAAGGATTTCGAAACTGATGGATACAGGTACTTCTTCATGGATTCTTTTGTAGAGAGTCTCGTCTTACTTGACCAACCGAATGCTATTTCTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

128

Amino Acids

14.53

Weight (kDa)

4.82

Isoelectric Point (pI)

29.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 1 cut(s) 249
AclWI GGATC 4 cut(s) 103, 134, 263, 276
AfaI GTAC 2 cut(s) 140, 317
AflIII ACRYGT 1 cut(s) 120
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
Alw26I GTCTC 2 cut(s) 60, 350
AlwI GGATC 4 cut(s) 103, 134, 263, 276
AoxI GGCC 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 236
AsuII TTCGAA 1 cut(s) 297
BamHI GGATCC 1 cut(s) 268
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 111
BccI CCATC 2 cut(s) 86, 299
BceAI ACGGC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 182
BciVI GTATCC 1 cut(s) 302
BcoDI GTCTC 2 cut(s) 60, 350
BfuI GTATCC 1 cut(s) 302
Bme1390I CCNGG 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 2 cut(s) 6, 270
BmrFI CCNGG 1 cut(s) 182
Bpu14I TTCGAA 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 243, 273
BseBI CCWGG 1 cut(s) 182
BseGI GGATG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 161
BseYI CCCAGC 1 cut(s) 244
BshFI GGCC 1 cut(s) 202
BshNI GGYRCC 1 cut(s) 4
BsmAI GTCTC 2 cut(s) 60, 350
BsmI GAATGC 2 cut(s) 246, 373
BsnI GGCC 1 cut(s) 202
Bsp119I TTCGAA 1 cut(s) 297
Bsp143I GATC 3 cut(s) 95, 126, 268
BspACI CCGC 1 cut(s) 249
BspANI GGCC 1 cut(s) 202
BspCNI CTCAG 1 cut(s) 162
BspHI TCATGA 1 cut(s) 129
BspLI GGNNCC 2 cut(s) 6, 270
BspPI GGATC 4 cut(s) 103, 134, 263, 276
BspT104I TTCGAA 1 cut(s) 297
BspT107I GGYRCC 1 cut(s) 4
BssMI GATC 3 cut(s) 95, 126, 268
BssSI CACGAG 1 cut(s) 111
Bst2BI CACGAG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 45
BstBI TTCGAA 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 170
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 3 cut(s) 98, 129, 271
BstMAI GTCTC 2 cut(s) 60, 350
BstMBI GATC 3 cut(s) 95, 126, 268
BstNI CCWGG 1 cut(s) 182
BstNSI RCATGY 1 cut(s) 124
BstSCI CCNGG 1 cut(s) 180
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BsuI GTATCC 1 cut(s) 302
BsuRI GGCC 1 cut(s) 202
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 178
CciI TCATGA 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 2 cut(s) 139, 316
CspCI CAANNNNNGTGG 1 cut(s) 32
CviAII CATG 4 cut(s) 11, 121, 130, 325
CviJI RGCY 2 cut(s) 29, 202
CviKI_1 RGCY 2 cut(s) 29, 202
CviQI GTAC 2 cut(s) 139, 316
DdeI CTNAG 1 cut(s) 170
DpnI GATC 3 cut(s) 97, 128, 270
DpnII GATC 3 cut(s) 95, 126, 268
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
EciI GGCGGA 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 180
FaeI CATG 4 cut(s) 14, 124, 133, 328
FaiI YATR 5 cut(s) 12, 81, 122, 131, 326
FalI AAGNNNNNCTT 4 cut(s) 13, 45, 42, 74
FatI CATG 4 cut(s) 10, 120, 129, 324
FokI GGATG 1 cut(s) 104
GsaI CCCAGC 1 cut(s) 248
HaeIII GGCC 1 cut(s) 202
Hin1II CATG 4 cut(s) 14, 124, 133, 328
HindIII AAGCTT 1 cut(s) 27
HinfI GANTC 4 cut(s) 53, 152, 329, 343
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 2 cut(s) 118, 159
Hpy188I TCNGA 2 cut(s) 91, 239
Hpy188III TCNNGA 3 cut(s) 42, 130, 272
Hpy8I GTNNAC 2 cut(s) 118, 159
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 170
Hsp92II CATG 4 cut(s) 14, 124, 133, 328
Kzo9I GATC 3 cut(s) 95, 126, 268
LpnPI CCDG 6 cut(s) 167, 183, 194, 230, 285, 298
MalI GATC 3 cut(s) 97, 128, 270
MboI GATC 3 cut(s) 95, 126, 268
MboII GAAGA 3 cut(s) 33, 62, 313
MflI RGATCY 1 cut(s) 268
MluCI AATT 1 cut(s) 164
MlyI GAGTC 2 cut(s) 62, 352
MseI TTAA 1 cut(s) 288
MspR9I CCNGG 1 cut(s) 182
Mva1269I GAATGC 2 cut(s) 246, 373
MvaI CCWGG 1 cut(s) 182
NdeII GATC 3 cut(s) 95, 126, 268
NlaIII CATG 4 cut(s) 14, 124, 133, 328
NlaIV GGNNCC 2 cut(s) 6, 270
NspI RCATGY 1 cut(s) 124
NspV TTCGAA 1 cut(s) 297
PagI TCATGA 1 cut(s) 129
PciI ACATGT 1 cut(s) 120
PcsI WCGNNNNNNNCGW 1 cut(s) 95
PctI GAATGC 2 cut(s) 246, 373
PfeI GAWTC 2 cut(s) 152, 329
PleI GAGTC 2 cut(s) 61, 351
PpsI GAGTC 2 cut(s) 61, 351
PscI ACATGT 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 180
PspFI CCCAGC 1 cut(s) 244
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 6, 270
PspPI GGNCC 1 cut(s) 200
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 2 cut(s) 140, 317
RsaNI GTAC 2 cut(s) 139, 316
SaqAI TTAA 1 cut(s) 288
Sau3AI GATC 3 cut(s) 95, 126, 268
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 2 cut(s) 62, 352
ScrFI CCNGG 1 cut(s) 182
SetI ASST 2 cut(s) 31, 317
SfuI TTCGAA 1 cut(s) 297
Sse9I AATT 1 cut(s) 164
SsiI CCGC 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 143
TaqI TCGA 3 cut(s) 41, 98, 297
TasI AATT 1 cut(s) 164
TfiI GAWTC 2 cut(s) 152, 329
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TspDTI ATGAA 3 cut(s) 96, 146, 313
XceI RCATGY 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.