Rmu_sc0005719.1_g000011

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005719.1
Physical Location & Seq
Reverse (-)
45739 .. 50840
5102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005719.1_g000011.1.cds

Sequence Viewer

Length: 756 bp
atgaccgtatcggcgatcaacaggctgaaacaggtgttccgtctacctggagtggtgaacttgcttcagccaacgaaggatgaaaaggcgtcgtttctgtcggcgggttacgccactgttcaagaggctgtgttccgtcagggcgtcacgaatggtagtggccttctctcgttgcactgggattaccctccattttgtgagcacaccaagcttatagctccatttgaagcttccgaacgaataccttttaacgagcgtgtcaatgtaatcggtacttgtaacgggctcgtatgtcttgttgctgatgattatcatagagaaagcatagtaatttggaacccttgtattcaaaggtttgtgtatgtgcctaggcctagcgaaggtgatatggaaatggcaaggacagagaaaagctatgcctttggctatgatgcaagtacaaatgactacaagagtgctgaagttatacctgctgactttcgacctggatttgctgaaacacaaactcttgtgaatggtgctttgcattggattcaatcaggtgaagagtgttttattcggtcgtttgatatctgtaaagaattgtttggcgagataaagatacccgaagctttgagaaaagaagagatttgccagatttcaagatataagaactcgcttgctctttttgagcgctatgaagatgatcggcaacaatttgacatgtgggggatgaaggaatatggcgtgatgcaatcgtgggctaaactactttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

251

Amino Acids

28.74

Weight (kDa)

5.26

Isoelectric Point (pI)

33.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 478
AccI GTMKAC 1 cut(s) 43
AciI CCGC 1 cut(s) 104
AcuI CTGAAG 2 cut(s) 50, 480
AcyI GRCGYC 2 cut(s) 89, 144
AfaI GTAC 2 cut(s) 274, 439
AfeI AGCGCT 1 cut(s) 674
AfiI CCNNNNNNNGG 1 cut(s) 380
AflIII ACRYGT 1 cut(s) 702
AgsI TTSAA 5 cut(s) 122, 227, 350, 536, 642
AjnI CCWGG 2 cut(s) 46, 484
AluBI AGCT 5 cut(s) 211, 218, 230, 414, 611
AluI AGCT 5 cut(s) 211, 218, 230, 414, 611
Alw21I GWGCWC 1 cut(s) 204
Aor51HI AGCGCT 1 cut(s) 674
AoxI GGCC 2 cut(s) 160, 371
AspA2I CCTAGG 1 cut(s) 368
AspLEI GCGC 1 cut(s) 675
AsuHPI GGTGA 3 cut(s) 67, 395, 554
AvrII CCTAGG 1 cut(s) 368
BanII GRGCYC 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 204
BciT130I CCWGG 2 cut(s) 48, 486
BfaI CTAG 2 cut(s) 369, 375
BfoI RGCGCY 1 cut(s) 676
BfuAI ACCTGC 1 cut(s) 478
BlnI CCTAGG 1 cut(s) 368
Bme1390I CCNGG 2 cut(s) 48, 486
BmiI GGNNCC 1 cut(s) 338
BmrFI CCNGG 2 cut(s) 48, 486
BmrI ACTGGG 1 cut(s) 187
BmsI GCATC 2 cut(s) 421, 720
BmuI ACTGGG 1 cut(s) 187
BpmI CTGGAG 1 cut(s) 69
BsaBI GATNNNNATC 1 cut(s) 309
BsaHI GRCGYC 2 cut(s) 89, 144
BsaJI CCNNGG 1 cut(s) 368
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse1I ACTGG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 309
BseBI CCWGG 2 cut(s) 48, 486
BseDI CCNNGG 1 cut(s) 368
BseGI GGATG 2 cut(s) 85, 717
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 380
BseNI ACTGG 1 cut(s) 182
Bsh1285I CGRYCG 1 cut(s) 563
BshFI GGCC 2 cut(s) 162, 373
BsiEI CGRYCG 1 cut(s) 563
BsiHKAI GWGCWC 1 cut(s) 204
BslI CCNNNNNNNGG 1 cut(s) 380
BsnI GGCC 2 cut(s) 162, 373
Bsp1286I GDGCHC 2 cut(s) 204, 288
Bsp143I GATC 2 cut(s) 15, 685
BspACI CCGC 1 cut(s) 104
BspANI GGCC 2 cut(s) 162, 373
BspLI GGNNCC 1 cut(s) 338
BspMI ACCTGC 1 cut(s) 478
BsrI ACTGG 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 368
BssMI GATC 2 cut(s) 15, 685
BssNI GRCGYC 2 cut(s) 89, 144
BssT1I CCWWGG 1 cut(s) 368
Bst2UI CCWGG 2 cut(s) 48, 486
Bst4CI ACNGT 2 cut(s) 7, 118
Bst6I CTCTTC 2 cut(s) 540, 618
BstACI GRCGYC 2 cut(s) 89, 144
BstC8I GCNNGC 1 cut(s) 660
BstENI CCTNNNNNAGG 1 cut(s) 378
BstF5I GGATG 2 cut(s) 85, 717
BstH2I RGCGCY 1 cut(s) 676
BstHHI GCGC 1 cut(s) 675
BstKTI GATC 2 cut(s) 18, 688
BstMBI GATC 2 cut(s) 15, 685
BstMCI CGRYCG 1 cut(s) 563
BstMWI GCNNNNNNNGC 2 cut(s) 110, 208
BstNI CCWGG 2 cut(s) 48, 486
BstNSI RCATGY 1 cut(s) 706
BstSCI CCNGG 2 cut(s) 46, 484
BsuRI GGCC 2 cut(s) 162, 373
BtsCI GGATG 2 cut(s) 85, 717
BtsIMutI CAGTG 2 cut(s) 114, 175
BveI ACCTGC 1 cut(s) 478
Cac8I GCNNGC 1 cut(s) 660
CfoI GCGC 1 cut(s) 675
CseI GACGC 2 cut(s) 78, 133
Csp6I GTAC 2 cut(s) 273, 438
CviAII CATG 1 cut(s) 703
CviQI GTAC 2 cut(s) 273, 438
DpnI GATC 2 cut(s) 17, 687
DpnII GATC 2 cut(s) 15, 685
Eam1104I CTCTTC 2 cut(s) 540, 618
EarI CTCTTC 2 cut(s) 540, 618
Eco130I CCWWGG 1 cut(s) 368
Eco147I AGGCCT 1 cut(s) 373
Eco24I GRGCYC 1 cut(s) 288
Eco32I GATATC 1 cut(s) 571
Eco47III AGCGCT 1 cut(s) 674
Eco57I CTGAAG 2 cut(s) 50, 480
EcoNI CCTNNNNNAGG 1 cut(s) 378
EcoRII CCWGG 2 cut(s) 46, 484
EcoRV GATATC 1 cut(s) 571
EcoT14I CCWWGG 1 cut(s) 368
EcoT38I GRGCYC 1 cut(s) 288
ErhI CCWWGG 1 cut(s) 368
FaeI CATG 1 cut(s) 706
FatI CATG 1 cut(s) 702
FauI CCCGC 1 cut(s) 97
FblI GTMKAC 1 cut(s) 43
FokI GGATG 2 cut(s) 92, 724
FriOI GRGCYC 1 cut(s) 288
FspBI CTAG 2 cut(s) 369, 375
GlaI GCGC 1 cut(s) 674
GsuI CTGGAG 1 cut(s) 69
HaeII RGCGCY 1 cut(s) 676
HaeIII GGCC 2 cut(s) 162, 373
HgaI GACGC 2 cut(s) 78, 133
HhaI GCGC 1 cut(s) 675
Hin1I GRCGYC 2 cut(s) 89, 144
Hin1II CATG 1 cut(s) 706
Hin6I GCGC 1 cut(s) 673
HinP1I GCGC 1 cut(s) 673
HindIII AAGCTT 3 cut(s) 209, 228, 609
HinfI GANTC 1 cut(s) 532
HphI GGTGA 3 cut(s) 67, 395, 554
Hpy166II GTNNAC 2 cut(s) 44, 58
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 3 cut(s) 122, 148, 642
Hpy8I GTNNAC 2 cut(s) 44, 58
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 4 cut(s) 70, 173, 374, 709
HpyCH4III ACNGT 2 cut(s) 7, 118
HpyCH4V TGCA 4 cut(s) 175, 434, 526, 733
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 208
Hsp92I GRCGYC 2 cut(s) 89, 144
Hsp92II CATG 1 cut(s) 706
HspAI GCGC 1 cut(s) 673
Kzo9I GATC 2 cut(s) 15, 685
LmnI GCTCC 1 cut(s) 223
LweI GCATC 2 cut(s) 421, 720
MaeI CTAG 2 cut(s) 369, 375
MaeIII GTNAC 3 cut(s) 107, 145, 278
MalI GATC 2 cut(s) 17, 687
MboI GATC 2 cut(s) 15, 685
MboII GAAGA 3 cut(s) 557, 635, 692
MhlI GDGCHC 2 cut(s) 204, 288
MluCI AATT 3 cut(s) 330, 581, 695
MnlI CCTC 2 cut(s) 118, 198
MseI TTAA 1 cut(s) 249
MspR9I CCNGG 2 cut(s) 48, 486
MvaI CCWGG 2 cut(s) 48, 486
MwoI GCNNNNNNNGC 2 cut(s) 110, 208
NdeII GATC 2 cut(s) 15, 685
NlaIII CATG 1 cut(s) 706
NlaIV GGNNCC 1 cut(s) 338
NmuCI GTSAC 1 cut(s) 145
NspI RCATGY 1 cut(s) 706
PceI AGGCCT 1 cut(s) 373
PciI ACATGT 1 cut(s) 702
PfeI GAWTC 1 cut(s) 532
PscI ACATGT 1 cut(s) 702
Psp6I CCWGG 2 cut(s) 46, 484
PspGI CCWGG 2 cut(s) 46, 484
PspN4I GGNNCC 1 cut(s) 338
RsaI GTAC 2 cut(s) 274, 439
RsaNI GTAC 2 cut(s) 273, 438
SaqAI TTAA 1 cut(s) 249
Sau3AI GATC 2 cut(s) 15, 685
ScrFI CCNGG 2 cut(s) 48, 486
SduI GDGCHC 2 cut(s) 204, 288
SfaNI GCATC 2 cut(s) 421, 720
Sse9I AATT 3 cut(s) 330, 581, 695
SseBI AGGCCT 1 cut(s) 373
SsiI CCGC 1 cut(s) 104
SspMI CTAG 2 cut(s) 369, 375
StuI AGGCCT 1 cut(s) 373
StyD4I CCNGG 2 cut(s) 46, 484
StyI CCWWGG 1 cut(s) 368
TaaI ACNGT 2 cut(s) 7, 118
TaqI TCGA 1 cut(s) 481
TaqII GACCGA 1 cut(s) 549
TasI AATT 3 cut(s) 330, 581, 695
TatI WGTACW 1 cut(s) 437
TfiI GAWTC 1 cut(s) 532
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 2 cut(s) 121, 182
TseFI GTSAC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 3 cut(s) 96, 693, 728
TspGWI ACGGA 2 cut(s) 29, 125
TspRI CASTG 2 cut(s) 121, 182
XagI CCTNNNNNAGG 1 cut(s) 378
XceI RCATGY 1 cut(s) 706
XmaJI CCTAGG 1 cut(s) 368
XmiI GTMKAC 1 cut(s) 43
XspI CTAG 2 cut(s) 369, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.