Prupe.4G221500_v2.0.a1

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0000068
Physical Location & Seq
Forward (+)
13909830 .. 13910848
1019 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G221500.1

Sequence Viewer

Length: 384 bp
ATGGATAACATACAAGATATCACACAAGCGATGCAGGAATTAAAATTTGAAGCTTTTCCTCCGGAAATCATACAAGATATCCTATTTAGGCTACCCGTTAAATCTCTGATCAATTGCACCTCAGTGTGCAAGGCATGGAGGTCCATGATCATGAACAAAAGCTTTATCCGCGCCCACTTAACCCTAACAGTCAATTTTGCTAACCAGGATGACATTGACCTCCTCCTACTCCACATAATTTCTTGTGACAGTAGCAGCACCGTAGACCACAAAACGATCGTTTCCGAGATAAAAGATGAGGTTCACTGTGTGCATTATGATAACCAGGCTTTTGATGTGTACTCCAAGATCGAATTTCCAATTGCTCCAGAGCAAGAACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

128

Amino Acids

14.63

Weight (kDa)

4.78

Isoelectric Point (pI)

62.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 264
AccII CGCG 1 cut(s) 171
AccIII TCCGGA 1 cut(s) 61
AciI CCGC 1 cut(s) 169
AcsI RAATTY 2 cut(s) 44, 353
AdeI CACNNNGTG 1 cut(s) 310
AfaI GTAC 1 cut(s) 341
AgsI TTSAA 1 cut(s) 50
AjnI CCWGG 2 cut(s) 204, 324
AleI CACNNNNGTG 1 cut(s) 122
AluBI AGCT 2 cut(s) 53, 162
AluI AGCT 2 cut(s) 53, 162
Aor13HI TCCGGA 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 255
ApoI RAATTY 2 cut(s) 44, 353
Asp700I GAANNNNTTC 1 cut(s) 54
AspLEI GCGC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 141
AvaII GGWCC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 267
BciT130I CCWGG 2 cut(s) 206, 326
BclI TGATCA 2 cut(s) 108, 147
BisI GCNGC 1 cut(s) 256
BlsI GCNGC 1 cut(s) 257
Bme1390I CCNGG 2 cut(s) 206, 326
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 141
BmrFI CCNGG 2 cut(s) 206, 326
BmsI GCATC 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 351
BsaWI WCCGGW 1 cut(s) 61
BseAI TCCGGA 1 cut(s) 61
BseBI CCWGG 2 cut(s) 206, 326
BseGI GGATG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 135
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 267
Bsh1236I CGCG 1 cut(s) 171
Bsh1285I CGRYCG 1 cut(s) 279
BsiEI CGRYCG 1 cut(s) 279
BsiSI CCGG 1 cut(s) 62
Bsp13I TCCGGA 1 cut(s) 61
Bsp143I GATC 4 cut(s) 108, 147, 276, 348
BspACI CCGC 1 cut(s) 169
BspCNI CTCAG 1 cut(s) 134
BspEI TCCGGA 1 cut(s) 61
BspFNI CGCG 1 cut(s) 171
BspHI TCATGA 1 cut(s) 150
BssMI GATC 4 cut(s) 108, 147, 276, 348
Bst2UI CCWGG 2 cut(s) 206, 326
Bst4CI ACNGT 5 cut(s) 190, 251, 262, 308, 381
BstDEI CTNAG 1 cut(s) 121
BstF5I GGATG 1 cut(s) 214
BstFNI CGCG 1 cut(s) 171
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 4 cut(s) 111, 150, 279, 351
BstMBI GATC 4 cut(s) 108, 147, 276, 348
BstMCI CGRYCG 1 cut(s) 279
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNI CCWGG 2 cut(s) 206, 326
BstSCI CCNGG 2 cut(s) 204, 324
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 267
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 2 cut(s) 129, 304
CciI TCATGA 1 cut(s) 150
CfoI GCGC 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 340
CviAII CATG 3 cut(s) 135, 145, 151
CviJI RGCY 4 cut(s) 53, 91, 162, 329
CviKI_1 RGCY 4 cut(s) 53, 91, 162, 329
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 1 cut(s) 121
DpnI GATC 4 cut(s) 110, 149, 278, 350
DpnII GATC 4 cut(s) 108, 147, 276, 348
DraIII CACNNNGTG 1 cut(s) 310
Eco32I GATATC 2 cut(s) 19, 79
Eco47I GGWCC 1 cut(s) 141
EcoRII CCWGG 2 cut(s) 204, 324
EcoRV GATATC 2 cut(s) 19, 79
FaeI CATG 3 cut(s) 138, 148, 154
FaiI YATR 7 cut(s) 11, 71, 136, 146, 152, 236, 318
FatI CATG 3 cut(s) 134, 144, 150
FbaI TGATCA 2 cut(s) 108, 147
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 256
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 1 cut(s) 256
GlaI GCGC 1 cut(s) 172
GluI GCNGC 1 cut(s) 256
GsuI CTGGAG 1 cut(s) 351
HapII CCGG 1 cut(s) 62
HhaI GCGC 1 cut(s) 173
Hin1II CATG 3 cut(s) 138, 148, 154
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HindIII AAGCTT 2 cut(s) 51, 160
HpaII CCGG 1 cut(s) 62
Hpy166II GTNNAC 3 cut(s) 265, 304, 340
Hpy188I TCNGA 2 cut(s) 108, 286
Hpy188III TCNNGA 3 cut(s) 62, 151, 368
Hpy8I GTNNAC 3 cut(s) 265, 304, 340
HpyCH4III ACNGT 5 cut(s) 190, 251, 262, 308, 381
HpyCH4V TGCA 4 cut(s) 34, 117, 129, 313
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 1 cut(s) 121
Hsp92II CATG 3 cut(s) 138, 148, 154
HspAI GCGC 1 cut(s) 171
Kpn2I TCCGGA 1 cut(s) 61
Ksp22I TGATCA 2 cut(s) 108, 147
Kzo9I GATC 4 cut(s) 108, 147, 276, 348
LmnI GCTCC 1 cut(s) 370
LpnPI CCDG 6 cut(s) 20, 75, 191, 218, 311, 338
Lsp1109I GCAGC 1 cut(s) 267
LweI GCATC 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 245
MalI GATC 4 cut(s) 110, 149, 278, 350
MboI GATC 4 cut(s) 108, 147, 276, 348
MfeI CAATTG 2 cut(s) 112, 360
MluCI AATT 7 cut(s) 38, 44, 112, 193, 237, 353, 360
MnlI CCTC 6 cut(s) 69, 130, 132, 230, 233, 292
MroI TCCGGA 1 cut(s) 61
MroXI GAANNNNTTC 1 cut(s) 54
MseI TTAA 3 cut(s) 41, 99, 179
MslI CAYNNNNRTG 2 cut(s) 122, 149
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 2 cut(s) 206, 326
MunI CAATTG 2 cut(s) 112, 360
MvaI CCWGG 2 cut(s) 206, 326
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 168
NdeII GATC 4 cut(s) 108, 147, 276, 348
NlaIII CATG 3 cut(s) 138, 148, 154
NmuCI GTSAC 1 cut(s) 245
OliI CACNNNNGTG 1 cut(s) 122
PagI TCATGA 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 54
PkrI GCNGC 1 cut(s) 257
Ple19I CGATCG 1 cut(s) 279
Psp6I CCWGG 2 cut(s) 204, 324
PspGI CCWGG 2 cut(s) 204, 324
PspPI GGNCC 1 cut(s) 141
PvuI CGATCG 1 cut(s) 279
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 2 cut(s) 122, 149
SaqAI TTAA 3 cut(s) 41, 99, 179
SatI GCNGC 1 cut(s) 256
Sau3AI GATC 4 cut(s) 108, 147, 276, 348
Sau96I GGNCC 1 cut(s) 141
ScrFI CCNGG 2 cut(s) 206, 326
SetI ASST 6 cut(s) 55, 122, 143, 164, 222, 303
SfaNI GCATC 1 cut(s) 21
SinI GGWCC 1 cut(s) 141
SmiMI CAYNNNNRTG 2 cut(s) 122, 149
Sse9I AATT 7 cut(s) 38, 44, 112, 193, 237, 353, 360
SsiI CCGC 1 cut(s) 169
StyD4I CCNGG 2 cut(s) 204, 324
TaaI ACNGT 5 cut(s) 190, 251, 262, 308, 381
TaqI TCGA 1 cut(s) 351
TasI AATT 7 cut(s) 38, 44, 112, 193, 237, 353, 360
TatI WGTACW 1 cut(s) 339
Tru1I TTAA 3 cut(s) 41, 99, 179
Tru9I TTAA 3 cut(s) 41, 99, 179
TscAI CASTG 2 cut(s) 129, 311
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 1 cut(s) 255
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 167
TspRI CASTG 2 cut(s) 129, 311
VpaK11BI GGWCC 1 cut(s) 141
XapI RAATTY 2 cut(s) 44, 353
XmiI GTMKAC 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.