MD03G1028200.v1.1

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0000068
Physical Location & Seq
Forward (+)
2312019 .. 2313218
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1028200.v1.1.491

Sequence Viewer

Length: 1200 bp
ATGGCTCACAACTTGCCTGAGGGAATCGTACATGATATACTATATAGGCTACCGCCTAAATCTTTGATCAGATGCACCTCGGTGTGCAAGCCATGGAACTCCATGATCAAAAATCCCAGCTTTATACGCACCCATGTCAACCGTACAATCTGTCTTAATAACCAGTTTTGCACCCACCTCTGCATACTCCACTGTGTTCCTAGAGCTATTCTTTCCAGCAACGTCAACGTTCGCGCAGACGAGCCAAGGGAGGAGCATTACAGTTTGCACTATGACAACCATGCTTTTGATGAGTACTGCAAGCTAGAATTTCCAATTGTTCCCAAGATGAATAAATTTCTTCGCGTGGATGGAATTTGTAATGGCCTGGTGTTCCTTGCTGATGATAACGACCGTTTAGGTTACACATTCATGTTATGCAACCCGTCTATCAGAAAGTCAGTGACACTTCCTAAGCCTCATCTATCCTTCGAGCCAATAGGCCGGTACCATGCTTGTATTGGTTTTGGTTTTGACGCTGTGACTAATGACTACAAGGTTGTGAGACTTATCAATGGGCGATGTGAAGATCCAAATACTTTTTATGAGGTTTATTCACTAGCTGGAGGCTCATGGAGTGATCCTCGTTCTTTGGATTTTGCACATTTAGCTATGAGTCCTAGAAAATCCCATGTTTTTGTTAATGGGGCTATTCATTTTGAGGTATGGCGCCCTTTGACAAACTTTGATTATGAATATTCCATTTTGGCGTTTGACGTGGGAAGCGATTCATTTCGCAGGATAATGGCACCAAAGAATTTCAGTATCCCAGGGACCACGCAATTGTTTATTTCCGGCAACGGAAATTCCATTACTCTGTTCCAGCCTTGTTTTACTAGTACCGGAGAGATTTGTCTGGATATATGGGAGATGAAAGAGTATGGCACTGAAGAGTCATGGACCAAATTGACAACTCTAAGTCTACCAAGTCCACGGAGACGAGTTTTCTACAGGCCATTATGGTTCGGGAAGAGTGGTGATGTAGTGTTGGTTCCGATTACTTGTTTATGGGAAGATGATGATAGGTATGAATTAGTTTCTCTAGACCTTGTGAGCAAACAATTAAAAAATCTTGGAATTCAGGGATATAAATATTATTATGCTGAATCTTATGTTGTGAGCCTCGTCTTACTCGACAAGACCGATGCAGTTTCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_3

Protein Analysis

400

Amino Acids

45.8

Weight (kDa)

6.67

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 42 7.9e-09 F-box domain
F-box-like PF12937 4 - 44 1.8e-08 F-box-like
FBA_3 PF08268 116 - 379 4.2e-20 F-box associated beta propeller domain
FBA_1 PF07734 120 - 389 7.6e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 486
AccB1I GGYRCC 3 cut(s) 486, 708, 787
AccI GTMKAC 1 cut(s) 961
AccII CGCG 2 cut(s) 234, 345
AciI CCGC 1 cut(s) 53
AclI AACGTT 1 cut(s) 228
AclWI GGATC 2 cut(s) 563, 614
AcsI RAATTY 6 cut(s) 308, 335, 354, 796, 844, 1116
AcuI CTGAAG 1 cut(s) 948
AcyI GRCGYC 1 cut(s) 709
AfaI GTAC 5 cut(s) 30, 145, 296, 488, 880
AhlI ACTAGT 1 cut(s) 875
AjiI CACGTC 1 cut(s) 757
AjnI CCWGG 2 cut(s) 366, 808
AleI CACNNNNGTG 1 cut(s) 80
AluBI AGCT 5 cut(s) 120, 206, 304, 602, 650
AluI AGCT 5 cut(s) 120, 206, 304, 602, 650
Alw26I GTCTC 2 cut(s) 538, 970
AlwI GGATC 2 cut(s) 563, 614
AoxI GGCC 3 cut(s) 364, 481, 992
ApoI RAATTY 6 cut(s) 308, 335, 354, 796, 844, 1116
Asp700I GAANNNNTTC 1 cut(s) 766
Asp718I GGTACC 1 cut(s) 486
AspLEI GCGC 2 cut(s) 236, 711
AspS9I GGNCC 2 cut(s) 813, 939
AsuHPI GGTGA 1 cut(s) 1028
AvaII GGWCC 2 cut(s) 813, 939
AxyI CCTNAGG 1 cut(s) 18
BanI GGYRCC 3 cut(s) 486, 708, 787
BccI CCATC 1 cut(s) 344
BciT130I CCWGG 2 cut(s) 368, 810
BciVI GTATCC 1 cut(s) 815
BclI TGATCA 2 cut(s) 66, 105
BcoDI GTCTC 2 cut(s) 538, 970
BcuI ACTAGT 1 cut(s) 875
BfaI CTAG 6 cut(s) 201, 305, 599, 660, 876, 1082
BfmI CTRYAG 1 cut(s) 988
BfoI RGCGCY 1 cut(s) 712
BfuI GTATCC 1 cut(s) 815
BmcAI AGTACT 1 cut(s) 296
Bme1390I CCNGG 2 cut(s) 368, 810
Bme18I GGWCC 2 cut(s) 813, 939
BmgBI CACGTC 1 cut(s) 757
BmgT120I GGNCC 2 cut(s) 813, 939
BmiI GGNNCC 5 cut(s) 488, 710, 789, 814, 1032
BmrFI CCNGG 2 cut(s) 368, 810
BmsI GCATC 2 cut(s) 62, 1174
BplI GAGNNNNNCTC 2 cut(s) 607, 639
BpmI CTGGAG 1 cut(s) 624
Bpu10I CCTNAGC 1 cut(s) 453
BsaHI GRCGYC 1 cut(s) 709
BsaJI CCNNGG 6 cut(s) 78, 92, 245, 808, 809, 971
BsaWI WCCGGW 1 cut(s) 881
Bse118I RCCGGY 1 cut(s) 483
Bse1I ACTGG 1 cut(s) 163
Bse21I CCTNAGG 1 cut(s) 18
BseBI CCWGG 2 cut(s) 368, 810
BseDI CCNNGG 6 cut(s) 78, 92, 245, 808, 809, 971
BseGI GGATG 1 cut(s) 355
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 266
BseYI CCCAGC 1 cut(s) 116
Bsh1236I CGCG 2 cut(s) 234, 345
Bsh1285I CGRYCG 1 cut(s) 394
BshFI GGCC 3 cut(s) 366, 483, 994
BshNI GGYRCC 3 cut(s) 486, 708, 787
BsiEI CGRYCG 1 cut(s) 394
BsiSI CCGG 3 cut(s) 484, 834, 882
BslFI GGGAC 1 cut(s) 826
BsmAI GTCTC 2 cut(s) 538, 970
BsmBI CGTCTC 1 cut(s) 970
BsmFI GGGAC 1 cut(s) 826
BsnI GGCC 3 cut(s) 366, 483, 994
Bsp143I GATC 4 cut(s) 66, 105, 568, 619
Bsp19I CCATGG 1 cut(s) 92
BspACI CCGC 1 cut(s) 53
BspANI GGCC 3 cut(s) 366, 483, 994
BspCNI CTCAG 1 cut(s) 10
BspFNI CGCG 2 cut(s) 234, 345
BspLI GGNNCC 5 cut(s) 488, 710, 789, 814, 1032
BspPI GGATC 2 cut(s) 563, 614
BspT107I GGYRCC 3 cut(s) 486, 708, 787
BsrFI RCCGGY 1 cut(s) 483
BsrI ACTGG 1 cut(s) 163
BssAI RCCGGY 1 cut(s) 483
BssECI CCNNGG 6 cut(s) 78, 92, 245, 808, 809, 971
BssMI GATC 4 cut(s) 66, 105, 568, 619
BssNI GRCGYC 1 cut(s) 709
BssT1I CCWWGG 2 cut(s) 92, 245
Bst2UI CCWGG 2 cut(s) 368, 810
Bst4CI ACNGT 4 cut(s) 143, 194, 263, 395
Bst6I CTCTTC 2 cut(s) 924, 1004
BstACI GRCGYC 1 cut(s) 709
BstC8I GCNNGC 2 cut(s) 89, 302
BstDEI CTNAG 3 cut(s) 18, 453, 956
BstDSI CCRYGG 2 cut(s) 92, 971
BstF5I GGATG 1 cut(s) 355
BstFNI CGCG 2 cut(s) 234, 345
BstH2I RGCGCY 1 cut(s) 712
BstHHI GCGC 2 cut(s) 236, 711
BstKTI GATC 4 cut(s) 69, 108, 571, 622
BstMAI GTCTC 2 cut(s) 538, 970
BstMBI GATC 4 cut(s) 66, 105, 568, 619
BstMCI CGRYCG 1 cut(s) 394
BstMWI GCNNNNNNNGC 2 cut(s) 126, 647
BstNI CCWGG 2 cut(s) 368, 810
BstSCI CCNGG 2 cut(s) 366, 808
BstSFI CTRYAG 1 cut(s) 988
BstUI CGCG 2 cut(s) 234, 345
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
Bsu36I CCTNAGG 1 cut(s) 18
BsuI GTATCC 1 cut(s) 815
BsuRI GGCC 3 cut(s) 366, 483, 994
BtgI CCRYGG 2 cut(s) 92, 971
BtgZI GCGATG 1 cut(s) 574
BtrI CACGTC 1 cut(s) 757
BtsCI GGATG 1 cut(s) 355
BtsIMutI CAGTG 3 cut(s) 190, 447, 924
Cac8I GCNNGC 2 cut(s) 89, 302
CfoI GCGC 2 cut(s) 236, 711
Cfr10I RCCGGY 1 cut(s) 483
Cfr13I GGNCC 2 cut(s) 813, 939
CseI GACGC 1 cut(s) 524
Csp6I GTAC 5 cut(s) 29, 144, 295, 487, 879
CviQI GTAC 5 cut(s) 29, 144, 295, 487, 879
DdeI CTNAG 3 cut(s) 18, 453, 956
DinI GGCGCC 1 cut(s) 710
DpnI GATC 4 cut(s) 68, 107, 570, 621
DpnII GATC 4 cut(s) 66, 105, 568, 619
Eam1104I CTCTTC 2 cut(s) 924, 1004
EarI CTCTTC 2 cut(s) 924, 1004
Eco130I CCWWGG 2 cut(s) 92, 245
Eco47I GGWCC 2 cut(s) 813, 939
Eco57I CTGAAG 1 cut(s) 948
Eco81I CCTNAGG 1 cut(s) 18
EcoRI GAATTC 1 cut(s) 1116
EcoRII CCWGG 2 cut(s) 366, 808
EcoT14I CCWWGG 2 cut(s) 92, 245
EgeI GGCGCC 1 cut(s) 710
EheI GGCGCC 1 cut(s) 710
ErhI CCWWGG 2 cut(s) 92, 245
Esp3I CGTCTC 1 cut(s) 970
FaqI GGGAC 1 cut(s) 826
FbaI TGATCA 2 cut(s) 66, 105
FblI GTMKAC 1 cut(s) 961
FokI GGATG 1 cut(s) 362
FspBI CTAG 6 cut(s) 201, 305, 599, 660, 876, 1082
GlaI GCGC 2 cut(s) 235, 710
GsaI CCCAGC 1 cut(s) 120
GsuI CTGGAG 1 cut(s) 624
HaeII RGCGCY 1 cut(s) 712
HaeIII GGCC 3 cut(s) 366, 483, 994
HapII CCGG 3 cut(s) 484, 834, 882
HgaI GACGC 1 cut(s) 524
HhaI GCGC 2 cut(s) 236, 711
Hin1I GRCGYC 1 cut(s) 709
Hin6I GCGC 2 cut(s) 234, 709
HinP1I GCGC 2 cut(s) 234, 709
HincII GTYRAC 2 cut(s) 139, 226
HindII GTYRAC 2 cut(s) 139, 226
HinfI GANTC 5 cut(s) 24, 655, 767, 932, 1145
HpaII CCGG 3 cut(s) 484, 834, 882
HphI GGTGA 1 cut(s) 1028
Hpy166II GTNNAC 4 cut(s) 139, 226, 962, 971
Hpy188I TCNGA 3 cut(s) 71, 434, 1035
Hpy188III TCNNGA 3 cut(s) 896, 1006, 1082
Hpy8I GTNNAC 4 cut(s) 139, 226, 962, 971
HpyAV CCTTC 1 cut(s) 478
HpyCH4III ACNGT 4 cut(s) 143, 194, 263, 395
HpyCH4IV ACGT 3 cut(s) 222, 228, 756
HpyCH4V TGCA 9 cut(s) 75, 87, 171, 183, 268, 300, 420, 641, 1187
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 647
HpyF3I CTNAG 3 cut(s) 18, 453, 956
HpySE526I ACGT 3 cut(s) 222, 228, 756
Hsp92I GRCGYC 1 cut(s) 709
HspAI GCGC 2 cut(s) 234, 709
KasI GGCGCC 1 cut(s) 708
KpnI GGTACC 1 cut(s) 490
Ksp22I TGATCA 2 cut(s) 66, 105
Kzo9I GATC 4 cut(s) 66, 105, 568, 619
LmnI GCTCC 1 cut(s) 253
LweI GCATC 2 cut(s) 62, 1174
MaeI CTAG 6 cut(s) 201, 305, 599, 660, 876, 1082
MaeII ACGT 3 cut(s) 222, 228, 756
MaeIII GTNAC 3 cut(s) 401, 442, 520
MalI GATC 4 cut(s) 68, 107, 570, 621
MboI GATC 4 cut(s) 66, 105, 568, 619
MboII GAAGA 5 cut(s) 332, 578, 941, 1021, 1064
MfeI CAATTG 2 cut(s) 315, 821
MflI RGATCY 1 cut(s) 568
Mly113I GGCGCC 1 cut(s) 709
MlyI GAGTC 2 cut(s) 664, 941
MroXI GAANNNNTTC 1 cut(s) 766
MseI TTAA 3 cut(s) 156, 681, 1103
MslI CAYNNNNRTG 2 cut(s) 80, 410
MspI CCGG 3 cut(s) 484, 834, 882
MspR9I CCNGG 2 cut(s) 368, 810
MunI CAATTG 2 cut(s) 315, 821
MvaI CCWGG 2 cut(s) 368, 810
MvnI CGCG 2 cut(s) 234, 345
MwoI GCNNNNNNNGC 2 cut(s) 126, 647
NarI GGCGCC 1 cut(s) 709
NcoI CCATGG 1 cut(s) 92
NdeII GATC 4 cut(s) 66, 105, 568, 619
NlaIV GGNNCC 5 cut(s) 488, 710, 789, 814, 1032
NmuCI GTSAC 2 cut(s) 442, 520
OliI CACNNNNGTG 1 cut(s) 80
PasI CCCWGGG 1 cut(s) 809
PcsI WCGNNNNNNNCGW 3 cut(s) 762, 1170, 1179
PdmI GAANNNNTTC 1 cut(s) 766
PfeI GAWTC 3 cut(s) 24, 767, 1145
PleI GAGTC 2 cut(s) 663, 940
PluTI GGCGCC 1 cut(s) 712
PpsI GAGTC 2 cut(s) 663, 940
Psp1406I AACGTT 1 cut(s) 228
Psp6I CCWGG 2 cut(s) 366, 808
PspFI CCCAGC 1 cut(s) 116
PspGI CCWGG 2 cut(s) 366, 808
PspN4I GGNNCC 5 cut(s) 488, 710, 789, 814, 1032
PspPI GGNCC 2 cut(s) 813, 939
PsrI GAACNNNNNNTAC 2 cut(s) 1014, 1046
PsuI RGATCY 1 cut(s) 568
RsaI GTAC 5 cut(s) 30, 145, 296, 488, 880
RsaNI GTAC 5 cut(s) 29, 144, 295, 487, 879
RseI CAYNNNNRTG 2 cut(s) 80, 410
SaqAI TTAA 3 cut(s) 156, 681, 1103
Sau3AI GATC 4 cut(s) 66, 105, 568, 619
Sau96I GGNCC 2 cut(s) 813, 939
ScaI AGTACT 1 cut(s) 296
SchI GAGTC 2 cut(s) 664, 941
ScrFI CCNGG 2 cut(s) 368, 810
SfaNI GCATC 2 cut(s) 62, 1174
SfcI CTRYAG 1 cut(s) 988
SfoI GGCGCC 1 cut(s) 710
SinI GGWCC 2 cut(s) 813, 939
SmiMI CAYNNNNRTG 2 cut(s) 80, 410
SpeI ACTAGT 1 cut(s) 875
SsiI CCGC 1 cut(s) 53
SspDI GGCGCC 1 cut(s) 708
SspI AATATT 2 cut(s) 737, 1133
SspMI CTAG 6 cut(s) 201, 305, 599, 660, 876, 1082
StyD4I CCNGG 2 cut(s) 366, 808
StyI CCWWGG 2 cut(s) 92, 245
TaaI ACNGT 4 cut(s) 143, 194, 263, 395
TaiI ACGT 3 cut(s) 225, 231, 759
TaqI TCGA 2 cut(s) 471, 1173
TaqII GACCGA 1 cut(s) 1196
TatI WGTACW 1 cut(s) 294
TfiI GAWTC 3 cut(s) 24, 767, 1145
Tru1I TTAA 3 cut(s) 156, 681, 1103
Tru9I TTAA 3 cut(s) 156, 681, 1103
TscAI CASTG 3 cut(s) 197, 447, 931
TseFI GTSAC 2 cut(s) 442, 520
Tsp45I GTSAC 2 cut(s) 442, 520
TspDTI ATGAA 7 cut(s) 344, 400, 683, 747, 759, 926, 1083
TspGWI ACGGA 2 cut(s) 855, 988
TspRI CASTG 3 cut(s) 197, 447, 931
VpaK11BI GGWCC 2 cut(s) 813, 939
XapI RAATTY 6 cut(s) 308, 335, 354, 796, 844, 1116
XbaI TCTAGA 1 cut(s) 1081
XcmI CCANNNNNNNNNTGG 1 cut(s) 497
XmiI GTMKAC 1 cut(s) 961
XmnI GAANNNNTTC 1 cut(s) 766
XspI CTAG 6 cut(s) 201, 305, 599, 660, 876, 1082
ZrmI AGTACT 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.