Rmu_sc0002944.1_g000030

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002944.1
OG0000068
Physical Location & Seq
Forward (+)
135385 .. 135777
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002944.1_g000030.1.cds

Sequence Viewer

Length: 393 bp
atgcatgcgtgcacacgccaggcttttgttaatgggactcttcattggcaggcagtacgtgggccaaatggtgctggttaccacttcattttgacatttgatgtgggcagcgaatcattttctgagataatgatcgatgccagagagtttcacaccgagcaagtcgatgagatttcaatctcaactgtctgttacaggagatgggaaatccattgttttattctcgaggtgcctgactttttcattccggccaatggtgtatttgatatatgggtaatgaaagagtacggcatgcctgagtcttggacaaaattggcaactttccggggaataggtccagaacgaagtgtgctccccaaggcattaagttttatgaaagccggtaaactatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

130

Amino Acids

14.86

Weight (kDa)

5.92

Isoelectric Point (pI)

47.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 229
AcoI YGGCCR 1 cut(s) 249
AfaI GTAC 2 cut(s) 57, 287
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 1 cut(s) 177
AjnI CCWGG 1 cut(s) 18
Alw21I GWGCWC 2 cut(s) 14, 354
Alw44I GTGCAC 1 cut(s) 10
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 2 cut(s) 62, 249
ApaLI GTGCAC 1 cut(s) 10
ApeKI GCWGC 1 cut(s) 108
AspS9I GGNCC 2 cut(s) 62, 335
AsuC2I CCSGG 1 cut(s) 326
AvaI CYCGRG 1 cut(s) 224
AvaII GGWCC 1 cut(s) 335
BaeGI GKGCMC 1 cut(s) 14
BanI GGYRCC 1 cut(s) 229
Bbv12I GWGCWC 2 cut(s) 14, 354
BbvI GCAGC 1 cut(s) 120
BccI CCATC 1 cut(s) 195
BceAI ACGGC 1 cut(s) 304
BciT130I CCWGG 1 cut(s) 20
BcnI CCSGG 1 cut(s) 326
BfmI CTRYAG 1 cut(s) 389
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
Bme1390I CCNGG 2 cut(s) 20, 326
Bme18I GGWCC 1 cut(s) 335
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 2 cut(s) 62, 335
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 2 cut(s) 20, 326
BmsI GCATC 1 cut(s) 127
BpuMI CCSGG 1 cut(s) 326
Bsa29I ATCGAT 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 59
BsaBI GATNNNNATC 2 cut(s) 131, 176
BsaJI CCNNGG 2 cut(s) 325, 357
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse118I RCCGGY 1 cut(s) 380
Bse8I GATNNNNATC 2 cut(s) 131, 176
BseBI CCWGG 1 cut(s) 20
BseCI ATCGAT 1 cut(s) 135
BseDI CCNNGG 2 cut(s) 325, 357
BseJI GATNNNNATC 2 cut(s) 131, 176
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 2 cut(s) 114, 288
BseSI GKGCMC 1 cut(s) 14
BseXI GCAGC 1 cut(s) 120
BshFI GGCC 2 cut(s) 64, 251
BshNI GGYRCC 1 cut(s) 229
BshVI ATCGAT 1 cut(s) 135
BsiHKAI GWGCWC 2 cut(s) 14, 354
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 3 cut(s) 248, 325, 381
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 254
BsmFI GGGAC 1 cut(s) 49
BsnI GGCC 2 cut(s) 64, 251
BsoBI CYCGRG 1 cut(s) 224
Bsp1286I GDGCHC 2 cut(s) 14, 354
Bsp143I GATC 1 cut(s) 132
BspANI GGCC 2 cut(s) 64, 251
BspCNI CTCAG 2 cut(s) 115, 289
BspDI ATCGAT 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 229
BsrFI RCCGGY 1 cut(s) 380
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 2 cut(s) 325, 357
BssMI GATC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 357
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 45
BstBAI YACGTR 1 cut(s) 59
BstC8I GCNNGC 4 cut(s) 6, 10, 51, 293
BstDEI CTNAG 2 cut(s) 123, 297
BstEII GGTNACC 1 cut(s) 77
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstNI CCWGG 1 cut(s) 20
BstNSI RCATGY 2 cut(s) 8, 295
BstPI GGTNACC 1 cut(s) 77
BstSCI CCNGG 2 cut(s) 18, 324
BstSFI CTRYAG 1 cut(s) 389
BstSLI GKGCMC 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 120
Bsu15I ATCGAT 1 cut(s) 135
BsuRI GGCC 2 cut(s) 64, 251
BsuTUI ATCGAT 1 cut(s) 135
Cac8I GCNNGC 4 cut(s) 6, 10, 51, 293
Cfr10I RCCGGY 1 cut(s) 380
Cfr13I GGNCC 2 cut(s) 62, 335
ClaI ATCGAT 1 cut(s) 135
Csp6I GTAC 2 cut(s) 56, 286
CviAII CATG 2 cut(s) 5, 292
CviJI RGCY 4 cut(s) 23, 64, 251, 380
CviKI_1 RGCY 4 cut(s) 23, 64, 251, 380
CviQI GTAC 2 cut(s) 56, 286
DdeI CTNAG 2 cut(s) 123, 297
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
EaeI YGGCCR 1 cut(s) 249
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 357
Eco47I GGWCC 1 cut(s) 335
Eco88I CYCGRG 1 cut(s) 224
Eco91I GGTNACC 1 cut(s) 77
EcoO65I GGTNACC 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 1 cut(s) 357
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 357
FaeI CATG 2 cut(s) 8, 295
FaiI YATR 6 cut(s) 6, 269, 271, 293, 374, 391
FaqI GGGAC 1 cut(s) 49
FatI CATG 2 cut(s) 4, 291
Fnu4HI GCNGC 1 cut(s) 109
Fsp4HI GCNGC 1 cut(s) 109
GluI GCNGC 1 cut(s) 109
HaeIII GGCC 2 cut(s) 64, 251
HapII CCGG 3 cut(s) 248, 325, 381
Hin1II CATG 2 cut(s) 8, 295
HinfI GANTC 3 cut(s) 37, 113, 299
HpaII CCGG 3 cut(s) 248, 325, 381
Hpy166II GTNNAC 2 cut(s) 12, 386
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 2 cut(s) 224, 338
Hpy8I GTNNAC 2 cut(s) 12, 386
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 4, 12
HpyF3I CTNAG 2 cut(s) 123, 297
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 2 cut(s) 8, 295
Kzo9I GATC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 357
Lsp1109I GCAGC 1 cut(s) 120
LweI GCATC 1 cut(s) 127
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 2 cut(s) 77, 191
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 1 cut(s) 32
MhlI GDGCHC 2 cut(s) 14, 354
MluCI AATT 1 cut(s) 311
MlyI GAGTC 2 cut(s) 31, 308
MnlI CCTC 1 cut(s) 220
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 30, 365
MspI CCGG 3 cut(s) 248, 325, 381
MspR9I CCNGG 2 cut(s) 20, 326
MvaI CCWGG 1 cut(s) 20
NciI CCSGG 1 cut(s) 326
NdeII GATC 1 cut(s) 132
NlaIII CATG 2 cut(s) 8, 295
NlaIV GGNNCC 1 cut(s) 231
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 8, 295
PaeI GCATGC 2 cut(s) 8, 295
PaeR7I CTCGAG 1 cut(s) 224
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 1 cut(s) 110
PleI GAGTC 2 cut(s) 31, 307
PpsI GAGTC 2 cut(s) 31, 307
Ppu21I YACGTR 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 18
PspEI GGTNACC 1 cut(s) 77
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 2 cut(s) 62, 335
RsaI GTAC 2 cut(s) 57, 287
RsaNI GTAC 2 cut(s) 56, 286
SaqAI TTAA 2 cut(s) 30, 365
SatI GCNGC 1 cut(s) 109
Sau3AI GATC 1 cut(s) 132
Sau96I GGNCC 2 cut(s) 62, 335
SchI GAGTC 2 cut(s) 31, 308
ScrFI CCNGG 2 cut(s) 20, 326
SduI GDGCHC 2 cut(s) 14, 354
SetI ASST 3 cut(s) 61, 231, 337
SfaNI GCATC 1 cut(s) 127
SfcI CTRYAG 1 cut(s) 389
Sfr274I CTCGAG 1 cut(s) 224
SinI GGWCC 1 cut(s) 335
SlaI CTCGAG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
SphI GCATGC 2 cut(s) 8, 295
Sse9I AATT 1 cut(s) 311
StyD4I CCNGG 2 cut(s) 18, 324
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 1 cut(s) 61
TaqI TCGA 3 cut(s) 135, 165, 225
TasI AATT 1 cut(s) 311
TfiI GAWTC 1 cut(s) 113
Tru1I TTAA 2 cut(s) 30, 365
Tru9I TTAA 2 cut(s) 30, 365
TseI GCWGC 1 cut(s) 108
TspDTI ATGAA 5 cut(s) 32, 76, 232, 293, 389
VneI GTGCAC 1 cut(s) 10
VpaK11BI GGWCC 1 cut(s) 335
XceI RCATGY 2 cut(s) 8, 295
XhoI CTCGAG 1 cut(s) 224
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.