pycom05g19280

F-box kelch-repeat protein At3g23880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000068
Physical Location & Seq
Forward (+)
22157039 .. 22157401
363 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g19280.1

Sequence Viewer

Length: 363 bp
ATGGATATCATACAAGAAATGCAAGAACTGAAATTGGAAGGGATGATACCCTCTTGTCCTCGGGATTTTCCTCCGGAAATCGTCCACGCGATCCTCATTAGGCTACCTGCTAAGTCTCTGGTCAAATGCACCTCAGTGTGCAAGACATGGAGGTCCATGATCATAAACCAAAGCTTTTTTAGCGTTCATCTCACCCGAAGAGGCAATCTTGCTGGCCAGAATGGCACTCGCCTCCTCCTTCTCCACAGGGTTTGTGGTAAGAAGAGAACCATTCTCTTCAAAACGGGTTGCAAGGTGACAGACGAGGTTCACTCTCTGCATTTTGATAACCAGGCTTTTGACGAGGTTCATTTCTTCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

121

Amino Acids

13.78

Weight (kDa)

9.17

Isoelectric Point (pI)

35.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 22 - 60 5.2e-09 F-box domain
F-box-like PF12937 24 - 57 1.6e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 151
Acc36I ACCTGC 1 cut(s) 115
AccII CGCG 1 cut(s) 89
AccIII TCCGGA 1 cut(s) 73
AclWI GGATC 1 cut(s) 85
AcoI YGGCCR 1 cut(s) 214
AgsI TTSAA 1 cut(s) 280
AjnI CCWGG 1 cut(s) 330
AleI CACNNNNGTG 1 cut(s) 134
AluBI AGCT 1 cut(s) 174
AluI AGCT 1 cut(s) 174
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 1 cut(s) 85
Ama87I CYCGRG 1 cut(s) 60
Aor13HI TCCGGA 1 cut(s) 73
AoxI GGCC 1 cut(s) 214
AspS9I GGNCC 1 cut(s) 153
AsuHPI GGTGA 2 cut(s) 184, 307
AvaI CYCGRG 1 cut(s) 60
AvaII GGWCC 1 cut(s) 153
BalI TGGCCA 1 cut(s) 216
BarI GAAGNNNNNNTAC 2 cut(s) 30, 62
BciT130I CCWGG 1 cut(s) 332
BclI TGATCA 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 120
BfuAI ACCTGC 1 cut(s) 115
BglI GCCNNNNNGGC 1 cut(s) 222
Bme1390I CCNGG 1 cut(s) 332
Bme18I GGWCC 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 332
BplI GAGNNNNNCTC 2 cut(s) 296, 328
BsaJI CCNNGG 1 cut(s) 59
BsaWI WCCGGW 1 cut(s) 73
BseAI TCCGGA 1 cut(s) 73
BseBI CCWGG 1 cut(s) 332
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 224
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 120
BsnI GGCC 1 cut(s) 216
BsoBI CYCGRG 1 cut(s) 60
Bsp13I TCCGGA 1 cut(s) 73
Bsp143I GATC 2 cut(s) 90, 159
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 146
BspEI TCCGGA 1 cut(s) 73
BspFNI CGCG 1 cut(s) 89
BspMI ACCTGC 1 cut(s) 115
BspPI GGATC 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 2 cut(s) 90, 159
Bst2UI CCWGG 1 cut(s) 332
Bst6I CTCTTC 3 cut(s) 193, 257, 281
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 2 cut(s) 111, 133
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 89
BstKTI GATC 2 cut(s) 93, 162
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 2 cut(s) 90, 159
BstMWI GCNNNNNNNGC 2 cut(s) 180, 222
BstNI CCWGG 1 cut(s) 332
BstSCI CCNGG 1 cut(s) 330
BstUI CGCG 1 cut(s) 89
BsuRI GGCC 1 cut(s) 216
BtsCI GGATG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 141
BveI ACCTGC 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 153
CspCI CAANNNNNGTGG 2 cut(s) 233, 268
CviAII CATG 2 cut(s) 147, 157
CviJI RGCY 4 cut(s) 103, 174, 216, 335
CviKI_1 RGCY 4 cut(s) 103, 174, 216, 335
DdeI CTNAG 2 cut(s) 111, 133
DpnI GATC 2 cut(s) 92, 161
DpnII GATC 2 cut(s) 90, 159
DrdI GACNNNNNNGTC 1 cut(s) 151
DseDI GACNNNNNNGTC 1 cut(s) 151
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 3 cut(s) 193, 257, 281
EarI CTCTTC 3 cut(s) 193, 257, 281
Eco32I GATATC 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 330
EcoRV GATATC 1 cut(s) 7
FaeI CATG 2 cut(s) 150, 160
FaiI YATR 4 cut(s) 11, 148, 158, 164
FatI CATG 2 cut(s) 146, 156
FbaI TGATCA 1 cut(s) 159
FokI GGATG 1 cut(s) 55
HaeIII GGCC 1 cut(s) 216
HapII CCGG 1 cut(s) 74
Hin1II CATG 2 cut(s) 150, 160
HindIII AAGCTT 1 cut(s) 172
HpaII CCGG 1 cut(s) 74
HphI GGTGA 2 cut(s) 184, 307
Hpy166II GTNNAC 2 cut(s) 85, 310
Hpy188III TCNNGA 2 cut(s) 62, 74
Hpy8I GTNNAC 2 cut(s) 85, 310
HpyAV CCTTC 2 cut(s) 32, 248
HpyCH4V TGCA 5 cut(s) 22, 129, 141, 291, 319
HpyF10VI GCNNNNNNNGC 2 cut(s) 180, 222
HpyF3I CTNAG 2 cut(s) 111, 133
Hsp92II CATG 2 cut(s) 150, 160
Kpn2I TCCGGA 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 159
Kzo9I GATC 2 cut(s) 90, 159
LpnPI CCDG 8 cut(s) 87, 104, 120, 198, 230, 232, 317, 344
MaeIII GTNAC 1 cut(s) 295
MalI GATC 2 cut(s) 92, 161
MboI GATC 2 cut(s) 90, 159
MboII GAAGA 4 cut(s) 210, 268, 274, 346
MlsI TGGCCA 1 cut(s) 216
MluCI AATT 1 cut(s) 32
MluNI TGGCCA 1 cut(s) 216
Mox20I TGGCCA 1 cut(s) 216
MroI TCCGGA 1 cut(s) 73
MscI TGGCCA 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 134
Msp20I TGGCCA 1 cut(s) 216
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 332
MvaI CCWGG 1 cut(s) 332
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 2 cut(s) 180, 222
NdeII GATC 2 cut(s) 90, 159
NlaIII CATG 2 cut(s) 150, 160
NmuCI GTSAC 1 cut(s) 295
OliI CACNNNNGTG 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 330
PspGI CCWGG 1 cut(s) 330
PspPI GGNCC 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 134
Sau3AI GATC 2 cut(s) 90, 159
Sau96I GGNCC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 332
SetI ASST 7 cut(s) 109, 134, 155, 176, 297, 309, 348
SinI GGWCC 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 134
Sse9I AATT 1 cut(s) 32
StyD4I CCNGG 1 cut(s) 330
TasI AATT 1 cut(s) 32
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 1 cut(s) 295
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 2 cut(s) 176, 338
TspRI CASTG 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 153
XcmI CCANNNNNNNNNTGG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.