Rroxscaffold_1G00006520

F-box kelch-repeat protein At3g23880-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
8541988 .. 8544474
2487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00006520.1

Sequence Viewer

Length: 411 bp
ATGGATGATAATGAGGATGCTGCGAATCAAACATTTGTGGAGGTTTATTCATTAGCTGCAGGCTCATGGAGTGACCCTAGGTTTGTTGATCCCCAATGTAAAATAAATATAGGCTCACCCCAGGCTTTTGTTAATGGGGCTCTTCATTGGGATGCATGCGATTTGACAAGTAGCTCATGTCGCTATTTTATACTGGCATTTGATGTGAGCAGTGAGTCATTTCGGGAGATAATGATGCCAAAGACTTTGGACTCGGATTTACAAATGGACTTGACATTGCAATTGTCTGTTTCAGGAGATGGAAAATCCCTTGCTTTGTTCGTGAGAGATCCTACTCGTATAGAACACAATTCGTTTCTTGATATATGGGTGATGAAAGAGTATTCTGTGCACGAGCGTGGACCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

15.3

Weight (kDa)

4.41

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 5 - 129 4.1e-14 F-box associated beta propeller domain
FBA_3 PF08268 12 - 130 1.5e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000068)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08281 FvH4_1g22270 FvH4_1g22290 FvH4_1g26450 FvH4_3g16521 FvH4_3g16840 FvH4_3g16850 FvH4_3g16850 FvH4_3g16860 FvH4_3g16860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18860 FvH4_3g18870 FvH4_3g18890 FvH4_3g18890 FvH4_3g18890 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18910 FvH4_3g18911 FvH4_3g18920 FvH4_3g18920 FvH4_3g18920 FvH4_3g18950 FvH4_3g18950 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18960 FvH4_3g18970 FvH4_3g18971 FvH4_3g18972 FvH4_3g22371 FvH4_3g33911 FvH4_3g39320 FvH4_3g39330 FvH4_3g41891 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g41900 FvH4_3g42380 FvH4_3g42380 FvH4_3g42380 FvH4_3g42390 FvH4_5g11821 FvH4_5g11823 FvH4_5g11830 FvH4_5g15943 FvH4_5g15980 FvH4_5g29450 FvH4_5g35130 FvH4_6g02391 FvH4_6g25310 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_6g32080 FvH4_7g06030 FvH4_7g06030 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11650 FvH4_7g11670 FvH4_7g11690 FvH4_7g11770
malus_domestica MD03G1027200.v1.1 MD03G1027800.v1.1 MD03G1027900.v1.1 MD03G1028000.v1.1 MD03G1028100.v1.1 MD03G1028200.v1.1 MD03G1028300.v1.1 MD03G1028400.v1.1 MD05G1165700.v1.1 MD05G1206600.v1.1 MD09G1091100.v1.1 MD11G1031100.v1.1 MD11G1031400.v1.1 MD11G1031700.v1.1 MD12G1183200.v1.1 MD13G1129500.v1.1 MD15G1381400.v1.1 MD16G1129700.v1.1
prunus_persica Prupe.1G172200_v2.0.a1 Prupe.1G172300_v2.0.a1 Prupe.2G255600_v2.0.a1 Prupe.4G150700_v2.0.a1 Prupe.4G150900_v2.0.a1 Prupe.4G151000_v2.0.a1 Prupe.4G151100_v2.0.a1 Prupe.4G156000_v2.0.a1 Prupe.4G190200_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G210300_v2.0.a1 Prupe.4G221400_v2.0.a1 Prupe.4G221500_v2.0.a1 Prupe.5G081800_v2.0.a1 Prupe.5G081900_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G096300_v2.0.a1 Prupe.6G287700_v2.0.a1 Prupe.6G294100_v2.0.a1 Prupe.8G003300_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G042400_v2.0.a1 Prupe.8G211600_v2.0.a1 Prupe.8G211700_v2.0.a1 Prupe.8G212800_v2.0.a1 Prupe.8G212900_v2.0.a1
pyrus_communis pycom03g02220 pycom03g02240 pycom03g02250 pycom03g02280 pycom03g02290 pycom03g02300 pycom04g15010 pycom05g19280 pycom08g08850 pycom09g01650 pycom09g01680 pycom11g02670 pycom11g23890 pycom13g11270 pycom13g25200 pycom16g10990
rosa_chinensis RchiOBHm_Chr1g0348511 RchiOBHm_Chr1g0350191 RchiOBHm_Chr2g0116421 RchiOBHm_Chr2g0116451 RchiOBHm_Chr2g0159381 RchiOBHm_Chr3g0482231 RchiOBHm_Chr3g0482251 RchiOBHm_Chr5g0003271 RchiOBHm_Chr5g0028051 RchiOBHm_Chr5g0030021 RchiOBHm_Chr5g0030031 RchiOBHm_Chr5g0031731 RchiOBHm_Chr5g0031741 RchiOBHm_Chr5g0031751 RchiOBHm_Chr5g0031761 RchiOBHm_Chr5g0031771 RchiOBHm_Chr5g0031801 RchiOBHm_Chr5g0039041 RchiOBHm_Chr5g0057531 RchiOBHm_Chr5g0061121 RchiOBHm_Chr5g0067481 RchiOBHm_Chr5g0067551 RchiOBHm_Chr5g0070761 RchiOBHm_Chr5g0075091 RchiOBHm_Chr5g0075101 RchiOBHm_Chr5g0075881 RchiOBHm_Chr6g0284591 RchiOBHm_Chr6g0284651
rosa_laevigata RLG00000004885 RLG00000012734 RLG00000018267 RLG00000018268 RLG00000018269 RLG00000018272 RLG00000021158 RLG00000021159 RLG00000023360 RLG00000025795 RLG00000028499 RLG00000033066 RLG00000033210 RLG00000033336 RLG00000033339 RLG00000033886 RLG00000034355 RLG00000036157 RLG00000036529
rosa_multiflora Rmu_co8023544.1_g000001 Rmu_co8070216.1_g000001 Rmu_co8115708.1_g000001 Rmu_co8182078.1_g000001 Rmu_co8269411.1_g000001 Rmu_sc0000533.1_g000049 Rmu_sc0001366.1_g000029 Rmu_sc0001366.1_g000030 Rmu_sc0001647.1_g000003 Rmu_sc0002121.1_g000005 Rmu_sc0002253.1_g000042 Rmu_sc0002652.1_g000020 Rmu_sc0002703.1_g000001 Rmu_sc0002944.1_g000029 Rmu_sc0002944.1_g000030 Rmu_sc0003368.1_g000004 Rmu_sc0003368.1_g000011 Rmu_sc0003819.1_g000014 Rmu_sc0004191.1_g000062 Rmu_sc0004191.1_g000064 Rmu_sc0004221.1_g000007 Rmu_sc0004800.1_g000015 Rmu_sc0005047.1_g000003 Rmu_sc0005047.1_g000004 Rmu_sc0005719.1_g000011 Rmu_sc0006847.1_g000006 Rmu_sc0006847.1_g000007 Rmu_sc0006847.1_g000009 Rmu_sc0006847.1_g000012 Rmu_sc0006847.1_g000014 Rmu_sc0006847.1_g000021 Rmu_sc0007753.1_g000009 Rmu_sc0009432.1_g000001 Rmu_sc0009958.1_g000006 Rmu_sc0010426.1_g000008 Rmu_sc0010618.1_g000001 Rmu_sc0010618.1_g000002 Rmu_sc0011187.1_g000003 Rmu_sc0015338.1_g000001 Rmu_sc0015338.1_g000008 Rmu_sc0015338.1_g000010 Rmu_sc0016526.1_g000004 Rmu_sc0017252.1_g000002 Rmu_sc0030815.1_g000002 Rmu_sc0040072.1_g000001 Rmu_sc0042974.1_g000001 Rmu_sc0042975.1_g000001 Rmu_ssc0000217.1_g000006 Rmu_ssc0000357.1_g000027
rosa_roxburghii Rroxscaffold_1G00005800 Rroxscaffold_1G00006520 Rroxscaffold_1G00010390 Rroxscaffold_1G00010420 Rroxscaffold_1G00013590 Rroxscaffold_1G00019550 Rroxscaffold_1G00042090 Rroxscaffold_1G00048480 Rroxscaffold_1G00049110 Rroxscaffold_1G00049120 Rroxscaffold_1G00049990 Rroxscaffold_1G00050980 Rroxscaffold_1G00051570 Rroxscaffold_1G00051610 Rroxscaffold_2G00090440 Rroxscaffold_2G00101710 Rroxscaffold_2G00127180 Rroxscaffold_2G00127200 Rroxscaffold_2G00147200 Rroxscaffold_3G00236860 Rroxscaffold_4G00305010 Rroxscaffold_4G00305020 Rroxscaffold_6G00399460 Rroxscaffold_6G00399470 Rroxscaffold_6G00399940 Rroxscaffold_6G00399950 Rroxscaffold_7G00210650
rosa_rugosa Rorug01G0209300 Rorug01G0209400 Rorug01G0209500 Rorug01G0209600 Rorug01G0209700 Rorug01G0209800 Rorug02G0043500 Rorug02G0206500 Rorug02G0206700 Rorug03G0195800 Rorug03G0195800 Rorug04G0105900 Rorug05G0103800 Rorug05G0111500 Rorug05G0176100 Rorug05G0178200 Rorug05G0337600 Rorug05G0337700 Rorug05G0385700 Rorug05G0436300 Rorug05G0438300 Rorug05G0438400 Rorug05G0438500 Rorug05G0438600 Rorug05G0438700 Rorug05G0443100.1 Rorug05G0443200 Rorug06G0164600
rosa_samantha Rh2CG525500 Rh2CG526300 Rh5AG399000 Rh5CG410800 Rh5CG437000 Rh5CG538800 Rh5DG197300 Rh5DG197600 Rh5DG226300 Rh5DG226400 Rh5DG226500 Rh5DG494400 Rh5DG494500 Rh5DG527500 Rh5DG534000 Rh6BG079300 Rh6CG186400
rosa_wichuraiana Rw0G017740 Rw1G019240 Rw1G019340 Rw2G020600 Rw3G022120 Rw3G022140 Rw5G018000 Rw5G018020 Rw5G018460 Rw5G020200 Rw5G020210 Rw5G020230 Rw5G024530 Rw5G037640 Rw5G039720 Rw5G043170 Rw5G045780 Rw5G046420 Rw6G023850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 83, 323
AjnI CCWGG 1 cut(s) 120
AleI CACNNNNGTG 1 cut(s) 396
AluBI AGCT 2 cut(s) 56, 174
AluI AGCT 2 cut(s) 56, 174
Alw21I GWGCWC 1 cut(s) 393
Alw44I GTGCAC 1 cut(s) 389
AlwI GGATC 2 cut(s) 83, 323
ApaLI GTGCAC 1 cut(s) 389
ApeKI GCWGC 2 cut(s) 20, 56
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AspA2I CCTAGG 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 2 cut(s) 108, 382
AvaII GGWCC 1 cut(s) 401
AvrII CCTAGG 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 393
BanII GRGCYC 1 cut(s) 142
BauI CACGAG 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 393
BbvI GCAGC 2 cut(s) 7, 43
BccI CCATC 1 cut(s) 293
BciT130I CCWGG 1 cut(s) 122
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 57
BisI GCNGC 2 cut(s) 21, 57
BlnI CCTAGG 1 cut(s) 77
BlsI GCNGC 2 cut(s) 22, 58
Bme1390I CCNGG 1 cut(s) 122
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 1 cut(s) 401
BmrFI CCNGG 1 cut(s) 122
BmsI GCATC 3 cut(s) 7, 142, 225
BsaJI CCNNGG 2 cut(s) 77, 120
Bse1I ACTGG 1 cut(s) 198
Bse3DI GCAATG 1 cut(s) 275
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 2 cut(s) 77, 120
BseGI GGATG 3 cut(s) 10, 22, 157
BseMI GCAATG 1 cut(s) 275
BseNI ACTGG 1 cut(s) 198
BseSI GKGCMC 1 cut(s) 393
BseXI GCAGC 2 cut(s) 7, 43
BsiHKAI GWGCWC 1 cut(s) 393
Bsp1286I GDGCHC 2 cut(s) 142, 393
Bsp143I GATC 2 cut(s) 88, 328
BspMAI CTGCAG 1 cut(s) 61
BspPI GGATC 2 cut(s) 83, 323
BspQI GCTCTTC 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 275
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 2 cut(s) 77, 120
BssMI GATC 2 cut(s) 88, 328
BssSI CACGAG 1 cut(s) 392
BssT1I CCWWGG 1 cut(s) 77
Bst2BI CACGAG 1 cut(s) 392
Bst2UI CCWGG 1 cut(s) 122
Bst6I CTCTTC 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 61, 157
BstF5I GGATG 3 cut(s) 10, 22, 157
BstKTI GATC 2 cut(s) 91, 331
BstMBI GATC 2 cut(s) 88, 328
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNI CCWGG 1 cut(s) 122
BstNSI RCATGY 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 120
BstSFI CTRYAG 1 cut(s) 57
BstSLI GKGCMC 1 cut(s) 393
BstV1I GCAGC 2 cut(s) 7, 43
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BtsCI GGATG 3 cut(s) 10, 22, 157
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 217
Cac8I GCNNGC 2 cut(s) 61, 157
Cfr13I GGNCC 1 cut(s) 401
CviAII CATG 3 cut(s) 66, 156, 177
CviJI RGCY 6 cut(s) 56, 63, 114, 125, 140, 174
CviKI_1 RGCY 6 cut(s) 56, 63, 114, 125, 140, 174
DpnI GATC 2 cut(s) 90, 330
DpnII GATC 2 cut(s) 88, 328
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 142
Eco47I GGWCC 1 cut(s) 401
EcoRII CCWGG 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 77
EcoT22I ATGCAT 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 142
ErhI CCWWGG 1 cut(s) 77
FaeI CATG 3 cut(s) 69, 159, 180
FaiI YATR 8 cut(s) 67, 110, 157, 178, 191, 341, 365, 367
FatI CATG 3 cut(s) 65, 155, 176
Fnu4HI GCNGC 2 cut(s) 21, 57
FokI GGATG 3 cut(s) 17, 29, 164
FriOI GRGCYC 1 cut(s) 142
Fsp4HI GCNGC 2 cut(s) 21, 57
FspBI CTAG 1 cut(s) 78
GluI GCNGC 2 cut(s) 21, 57
Hin1II CATG 3 cut(s) 69, 159, 180
HinfI GANTC 3 cut(s) 25, 215, 251
HphI GGTGA 2 cut(s) 108, 382
Hpy166II GTNNAC 2 cut(s) 391, 401
Hpy188I TCNGA 1 cut(s) 256
Hpy188III TCNNGA 4 cut(s) 224, 294, 322, 359
Hpy8I GTNNAC 2 cut(s) 391, 401
HpyCH4V TGCA 4 cut(s) 59, 155, 280, 391
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
Hsp92II CATG 3 cut(s) 69, 159, 180
Kzo9I GATC 2 cut(s) 88, 328
LguI GCTCTTC 1 cut(s) 147
LpnPI CCDG 5 cut(s) 45, 107, 134, 179, 279
Lsp1109I GCAGC 2 cut(s) 7, 43
LweI GCATC 3 cut(s) 7, 142, 225
MaeI CTAG 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 71
MalI GATC 2 cut(s) 90, 330
MboI GATC 2 cut(s) 88, 328
MboII GAAGA 1 cut(s) 134
MfeI CAATTG 1 cut(s) 281
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 2 cut(s) 142, 393
MluCI AATT 3 cut(s) 281, 349, 406
MlyI GAGTC 2 cut(s) 224, 245
MnlI CCTC 2 cut(s) 7, 34
Mph1103I ATGCAT 1 cut(s) 157
MseI TTAA 1 cut(s) 132
MslI CAYNNNNRTG 2 cut(s) 150, 396
MspR9I CCNGG 1 cut(s) 122
MunI CAATTG 1 cut(s) 281
MvaI CCWGG 1 cut(s) 122
MwoI GCNNNNNNNGC 1 cut(s) 180
NdeII GATC 2 cut(s) 88, 328
NlaIII CATG 3 cut(s) 69, 159, 180
NmuCI GTSAC 1 cut(s) 71
NsiI ATGCAT 1 cut(s) 157
NspI RCATGY 1 cut(s) 159
OliI CACNNNNGTG 1 cut(s) 396
PaeI GCATGC 1 cut(s) 159
PciSI GCTCTTC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 2 cut(s) 22, 58
PleI GAGTC 2 cut(s) 223, 245
PpsI GAGTC 2 cut(s) 223, 245
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspPI GGNCC 1 cut(s) 401
PstI CTGCAG 1 cut(s) 61
PsuI RGATCY 1 cut(s) 328
RseI CAYNNNNRTG 2 cut(s) 150, 396
SapI GCTCTTC 1 cut(s) 147
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 2 cut(s) 21, 57
Sau3AI GATC 2 cut(s) 88, 328
Sau96I GGNCC 1 cut(s) 401
SchI GAGTC 2 cut(s) 224, 245
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 2 cut(s) 142, 393
SetI ASST 4 cut(s) 45, 58, 83, 176
SfaNI GCATC 3 cut(s) 7, 142, 225
SfcI CTRYAG 1 cut(s) 57
SinI GGWCC 1 cut(s) 401
SmiMI CAYNNNNRTG 2 cut(s) 150, 396
SphI GCATGC 1 cut(s) 159
Sse9I AATT 3 cut(s) 281, 349, 406
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 1 cut(s) 77
TasI AATT 3 cut(s) 281, 349, 406
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 2 cut(s) 20, 56
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 3 cut(s) 39, 134, 389
TspRI CASTG 1 cut(s) 217
VneI GTGCAC 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 401
XceI RCATGY 1 cut(s) 159
XmaJI CCTAGG 1 cut(s) 77
XspI CTAG 1 cut(s) 78
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.