Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0014110

Physical Location & Seq

Genomic Coordinates Forward (+)

71496898 .. 71505494

Gene Structure 8597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00050990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGTACGGCGGCGATGAGGTGTCGGCCATCGTAATCGACCTCGGCTCCCACACTTGCAAGGCCGGCTATGCTGGCGAAGATGCGCCCAAGGCTGTTTTTCCATCGGTTGTTGGGTCAATTGATCAAATGGAAGTTGATGAAACTGAAAACTCTGGATCTGCTGATCCAAAAAGTGATTCTGACAAAACCAAGGGAAAACGGAAATTATATGTAGGATCTCAAGCTTTAGGATATCGTCGGGATCATATGGAGGTGCTGCCCCCTATAAAGGATGGAGTTGTTGTTGACTGGGATGCTGTGGAGGGTATATGGGACCATGCTTTTAGGGACTGCCTATTGGTTGATCCCAAAGAGCATCCAATGCTACTTGCAGAGCCATCTTTTAACTCCCAGCAACAGAGAGAAAGAACGGCAGAGCTCATGTTTGAAAAATACAAAGTTCCTGCTTTATTCATGGCTAAGAATGCTGTTCTCACATCTTTTGCATCTGGCCGTGCTACCTCGTTGGTAGTTGACAGTGGCGGGGGATCAACTACAGTTGCTCCAGTTCATGATGGTTATGTTCTCCAAAAGGCTGTGTCATCCTCTCCTATTGGAGGAGAATTTCTTACTGATTGTTTGACGAAAAGTTTGGAAAGTAAAGGAATGATGATCAAACCCAGATATTCATTCAAGAGAAAGGAAACACGACCTGGAGAGTTTCAGGTTGTAGATGTTGATTTTCCAAACACCACAGAGAGCTACAAGCTCTATTCCAAGAGGATAATTGCCAGTGATATCAAGGAATGTGTGTGCAGAGCGCCTGACACTCCATATGATGAAAGCTCATATTCAAACATTCCAATGACCCCATATGAGCTTCCTGATGGCCAGACAATTGAAATTGGATCTGATAGATTCAAGATCCCTGATGTACTGTTCAACCCATCCTTAGCTCAGACGATTCCTGGTATGGAGAGTTTTGCAGAGATTGCTCCTTCTCTTCGTGGTTTACCTCAAATGGTTATTGACAGCATTAACAAGAGTGACGTGGACATCCGTCGTGAATTATTTAGTAGTATACTGCTTGCTGGTGGCACAGCATCGATGCAACAGTTAAAGGAACGCCTTGAGAAAGACTTGCTGGAGGAATCTCCCCAAGCTGCTAGAGTTAAAGTATTGGCAAGTGGAAACGCAACAGAAAGGCGATTCAGTGTTTGGATAGGTGGCAGTATATTGGCTTCTCTTGGTTCATTCCAGCAGATGTGGTTCTCCAAGGCTGAGTACGAGGAGCATGGGGCTTCTTATGTACAAAGAAAGTGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006325 GO:0006996 GO:0007010 GO:0007275 GO:0007276 GO:0008150 GO:0009314 GO:0009416 GO:0009555 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051276 GO:0051704 GO:0055046 GO:0061458 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Actin

Protein Analysis

435

Amino Acids

47.86

Weight (kDa)

5.14

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	4 - 434	6e-161	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18450
fragaria_vesca	FvH4_3g17390 FvH4_6g50670
malus_domestica	MD03G1252000.v1.1 MD11G1273400.v1.1
prunus_persica	Prupe.4G154200_v2.0.a1
pyrus_communis	pycom03g19950
rosa_chinensis	RchiOBHm_Chr5g0028921
rosa_laevigata	RLG00000033127
rosa_multiflora	Rmu_sc0005178.1_g000021
rosa_roxburghii	Rroxscaffold_1G00050990
rosa_rugosa	Rorug05G0111500
rosa_samantha	Rh5AG203800 Rh5BG202100 Rh5CG222800 Rh5DG205400
rosa_wichuraiana	Rw5G018450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1060
AciI	CCGC	2 cut(s)	9, 522
AclWI	GGATC	8 cut(s)	158, 163, 223, 249, 338, 535, 895, 898
AcoI	YGGCCR	3 cut(s)	24, 490, 868
AcsI	RAATTY	1 cut(s)	602
AfaI	GTAC	4 cut(s)	5, 915, 1265, 1290
AfiI	CCNNNNNNNGG	2 cut(s)	268, 596
AgsI	TTSAA	6 cut(s)	428, 673, 834, 881, 901, 922
AjiI	CACGTC	1 cut(s)	1030
AjnI	CCWGG	2 cut(s)	691, 946
AjuI	GAANNNNNNNTTGG	2 cut(s)	160, 192
AluBI	AGCT	8 cut(s)	224, 418, 741, 748, 825, 859, 935, 1142
AluI	AGCT	8 cut(s)	224, 418, 741, 748, 825, 859, 935, 1142
Alw21I	GWGCWC	1 cut(s)	420
AlwI	GGATC	8 cut(s)	158, 163, 223, 249, 338, 535, 895, 898
AoxI	GGCC	4 cut(s)	24, 60, 490, 868
ApeKI	GCWGC	2 cut(s)	256, 1142
ApoI	RAATTY	1 cut(s)	602
ArsI	GACNNNNNNTTYG	2 cut(s)	613, 645
AspLEI	GCGC	2 cut(s)	85, 802
AspS9I	GGNCC	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	313
BaeGI	GKGCMC	1 cut(s)	1304
BalI	TGGCCA	1 cut(s)	870
BanII	GRGCYC	1 cut(s)	420
BarI	GAAGNNNNNNTAC	2 cut(s)	1204, 1236
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	2 cut(s)	243, 1129
BccI	CCATC	7 cut(s)	35, 109, 266, 385, 548, 860, 934
BceAI	ACGGC	3 cut(s)	22, 426, 477
BciT130I	CCWGG	2 cut(s)	693, 948
BclI	TGATCA	2 cut(s)	121, 651
BfaI	CTAG	1 cut(s)	1146
BfmI	CTRYAG	1 cut(s)	534
BfoI	RGCGCY	1 cut(s)	803
BisI	GCNGC	3 cut(s)	10, 257, 1143
BlsI	GCNGC	3 cut(s)	11, 258, 1144
Bme1390I	CCNGG	2 cut(s)	693, 948
Bme18I	GGWCC	1 cut(s)	313
BmgBI	CACGTC	1 cut(s)	1030
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	2 cut(s)	46, 314
BmrFI	CCNGG	2 cut(s)	693, 948
BmrI	ACTGGG	1 cut(s)	298
BmsI	GCATC	6 cut(s)	70, 283, 364, 494, 1077, 1091
BmuI	ACTGGG	1 cut(s)	298
BoxI	GACNNNNGTC	1 cut(s)	1038
BpmI	CTGGAG	3 cut(s)	528, 714, 1145
Bpu10I	CCTNAGC	1 cut(s)	931
BpuEI	CTTGAG	2 cut(s)	204, 1130
Bsa29I	ATCGAT	1 cut(s)	1085
BsaJI	CCNNGG	4 cut(s)	40, 87, 189, 1254
BsaXI	ACNNNNNCTCC	6 cut(s)	29, 59, 267, 297, 526, 556
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 596
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	3 cut(s)	293, 545, 771
BseBI	CCWGG	2 cut(s)	693, 948
BseCI	ATCGAT	1 cut(s)	1085
BseDI	CCNNGG	4 cut(s)	40, 87, 189, 1254
BseGI	GGATG	6 cut(s)	277, 298, 355, 581, 926, 1035
BseLI	CCNNNNNNNGG	2 cut(s)	268, 596
BseMII	CTCAG	2 cut(s)	950, 1251
BseNI	ACTGG	3 cut(s)	293, 545, 771
BseRI	GAGGAG	2 cut(s)	612, 1283
BseSI	GKGCMC	1 cut(s)	1304
BseXI	GCAGC	2 cut(s)	243, 1129
BseYI	CCCAGC	1 cut(s)	390
BsgI	GTGCAG	1 cut(s)	814
BshFI	GGCC	4 cut(s)	26, 62, 492, 870
BshVI	ATCGAT	1 cut(s)	1085
BsiHKAI	GWGCWC	1 cut(s)	420
BsiSI	CCGG	1 cut(s)	63
BslFI	GGGAC	2 cut(s)	326, 341
BslI	CCNNNNNNNGG	2 cut(s)	268, 596
BsmFI	GGGAC	2 cut(s)	326, 341
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	4 cut(s)	26, 62, 492, 870
Bsp1286I	GDGCHC	2 cut(s)	420, 1304
Bsp1407I	TGTACA	1 cut(s)	1288
BspACI	CCGC	2 cut(s)	9, 522
BspANI	GGCC	4 cut(s)	26, 62, 492, 870
BspCNI	CTCAG	2 cut(s)	949, 1252
BspDI	ATCGAT	1 cut(s)	1085
BspHI	TCATGA	1 cut(s)	550
BspLI	GGNNCC	2 cut(s)	46, 314
BspPI	GGATC	8 cut(s)	158, 163, 223, 249, 338, 535, 895, 898
BsrFI	RCCGGY	1 cut(s)	62
BsrGI	TGTACA	1 cut(s)	1288
BsrI	ACTGG	3 cut(s)	293, 545, 771
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	4 cut(s)	40, 87, 189, 1254
BssNAI	GTATAC	1 cut(s)	1061
BssT1I	CCWWGG	3 cut(s)	87, 189, 1254
Bst1107I	GTATAC	1 cut(s)	1061
Bst2UI	CCWGG	2 cut(s)	693, 948
Bst4CI	ACNGT	4 cut(s)	518, 538, 918, 1095
Bst6I	CTCTTC	1 cut(s)	987
BstAPI	GCANNNNNTGC	2 cut(s)	361, 971
BstAUI	TGTACA	1 cut(s)	1288
BstC8I	GCNNGC	3 cut(s)	64, 73, 1068
BstDEI	CTNAG	4 cut(s)	459, 931, 936, 1260
BstENI	CCTNNNNNAGG	1 cut(s)	594
BstF5I	GGATG	6 cut(s)	277, 298, 355, 581, 926, 1035
BstH2I	RGCGCY	1 cut(s)	803
BstHHI	GCGC	2 cut(s)	85, 802
BstMWI	GCNNNNNNNGC	7 cut(s)	63, 68, 72, 89, 361, 464, 971
BstNI	CCWGG	2 cut(s)	693, 948
BstPAI	GACNNNNGTC	1 cut(s)	1038
BstSCI	CCNGG	2 cut(s)	691, 946
BstSFI	CTRYAG	1 cut(s)	534
BstSLI	GKGCMC	1 cut(s)	1304
BstV1I	GCAGC	2 cut(s)	243, 1129
BstX2I	RGATCY	4 cut(s)	155, 215, 887, 903
BstYI	RGATCY	4 cut(s)	155, 215, 887, 903
BstZ17I	GTATAC	1 cut(s)	1061
Bsu15I	ATCGAT	1 cut(s)	1085
BsuRI	GGCC	4 cut(s)	26, 62, 492, 870
BsuTUI	ATCGAT	1 cut(s)	1085
BtgZI	GCGATG	1 cut(s)	27
BtrI	CACGTC	1 cut(s)	1030
BtsCI	GGATG	6 cut(s)	277, 298, 355, 581, 926, 1035
BtsIMutI	CAGTG	3 cut(s)	523, 778, 1198
Cac8I	GCNNGC	3 cut(s)	64, 73, 1068
CciI	TCATGA	1 cut(s)	550
CfoI	GCGC	2 cut(s)	85, 802
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	313
ClaI	ATCGAT	1 cut(s)	1085
Csp6I	GTAC	4 cut(s)	4, 914, 1264, 1289
CviAII	CATG	5 cut(s)	317, 421, 454, 551, 1274
CviQI	GTAC	4 cut(s)	4, 914, 1264, 1289
DdeI	CTNAG	4 cut(s)	459, 931, 936, 1260
EaeI	YGGCCR	3 cut(s)	24, 490, 868
Eam1104I	CTCTTC	1 cut(s)	987
EarI	CTCTTC	1 cut(s)	987
Ecl136II	GAGCTC	1 cut(s)	418
Eco130I	CCWWGG	3 cut(s)	87, 189, 1254
Eco24I	GRGCYC	1 cut(s)	420
Eco32I	GATATC	2 cut(s)	233, 778
Eco47I	GGWCC	1 cut(s)	313
Eco53kI	GAGCTC	1 cut(s)	418
EcoICRI	GAGCTC	1 cut(s)	418
EcoNI	CCTNNNNNAGG	1 cut(s)	594
EcoRII	CCWGG	2 cut(s)	691, 946
EcoRV	GATATC	2 cut(s)	233, 778
EcoT14I	CCWWGG	3 cut(s)	87, 189, 1254
EcoT38I	GRGCYC	1 cut(s)	420
ErhI	CCWWGG	3 cut(s)	87, 189, 1254
FaeI	CATG	5 cut(s)	320, 424, 457, 554, 1277
FaqI	GGGAC	2 cut(s)	326, 341
FatI	CATG	5 cut(s)	316, 420, 453, 550, 1273
FauI	CCCGC	1 cut(s)	515
FauNDI	CATATG	3 cut(s)	246, 814, 853
FbaI	TGATCA	2 cut(s)	121, 651
FblI	GTMKAC	1 cut(s)	1060
Fnu4HI	GCNGC	3 cut(s)	10, 257, 1143
FokI	GGATG	6 cut(s)	284, 305, 342, 568, 913, 1022
FriOI	GRGCYC	1 cut(s)	420
Fsp4HI	GCNGC	3 cut(s)	10, 257, 1143
FspBI	CTAG	1 cut(s)	1146
GlaI	GCGC	2 cut(s)	84, 801
GluI	GCNGC	3 cut(s)	10, 257, 1143
GsaI	CCCAGC	1 cut(s)	394
GsuI	CTGGAG	3 cut(s)	528, 714, 1145
HaeII	RGCGCY	1 cut(s)	803
HaeIII	GGCC	4 cut(s)	26, 62, 492, 870
HapII	CCGG	1 cut(s)	63
HhaI	GCGC	2 cut(s)	85, 802
Hin1II	CATG	5 cut(s)	320, 424, 457, 554, 1277
Hin6I	GCGC	2 cut(s)	83, 800
HinP1I	GCGC	2 cut(s)	83, 800
HincII	GTYRAC	2 cut(s)	286, 514
HindII	GTYRAC	2 cut(s)	286, 514
HindIII	AAGCTT	1 cut(s)	222
HinfI	GANTC	5 cut(s)	176, 897, 943, 1130, 1188
HpaII	CCGG	1 cut(s)	63
Hpy166II	GTNNAC	5 cut(s)	286, 514, 992, 1033, 1061
Hpy188I	TCNGA	3 cut(s)	181, 892, 939
Hpy188III	TCNNGA	7 cut(s)	153, 239, 551, 673, 863, 901, 1043
Hpy8I	GTNNAC	5 cut(s)	286, 514, 992, 1033, 1061
Hpy99I	CGWCG	2 cut(s)	240, 1044
HpyAV	CCTTC	1 cut(s)	987
HpyCH4III	ACNGT	4 cut(s)	518, 538, 918, 1095
HpyCH4IV	ACGT	1 cut(s)	1029
HpyCH4V	TGCA	6 cut(s)	57, 371, 485, 795, 965, 1090
HpyF10VI	GCNNNNNNNGC	7 cut(s)	63, 68, 72, 89, 361, 464, 971
HpyF3I	CTNAG	4 cut(s)	459, 931, 936, 1260
HpySE526I	ACGT	1 cut(s)	1029
Hsp92II	CATG	5 cut(s)	320, 424, 457, 554, 1277
HspAI	GCGC	2 cut(s)	83, 800
KroI	GCCGGC	1 cut(s)	62
KroNI	GCCGGC	1 cut(s)	64
Ksp22I	TGATCA	2 cut(s)	121, 651
LmnI	GCTCC	4 cut(s)	50, 547, 979, 1270
Lsp1109I	GCAGC	2 cut(s)	243, 1129
LweI	GCATC	6 cut(s)	70, 283, 364, 494, 1077, 1091
MaeI	CTAG	1 cut(s)	1146
MaeII	ACGT	1 cut(s)	1029
MaeIII	GTNAC	1 cut(s)	1025
MboII	GAAGA	2 cut(s)	89, 974
MfeI	CAATTG	2 cut(s)	117, 876
MflI	RGATCY	4 cut(s)	155, 215, 887, 903
MhlI	GDGCHC	2 cut(s)	420, 1304
MlsI	TGGCCA	1 cut(s)	870
MluCI	AATT	7 cut(s)	117, 203, 602, 765, 876, 882, 1046
MluNI	TGGCCA	1 cut(s)	870
Mox20I	TGGCCA	1 cut(s)	870
MroNI	GCCGGC	1 cut(s)	62
MscI	TGGCCA	1 cut(s)	870
MseI	TTAA	4 cut(s)	384, 1017, 1097, 1152
MslI	CAYNNNNRTG	1 cut(s)	842
Msp20I	TGGCCA	1 cut(s)	870
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	2 cut(s)	693, 948
MunI	CAATTG	2 cut(s)	117, 876
Mva1269I	GAATGC	1 cut(s)	469
MvaI	CCWGG	2 cut(s)	693, 948
MwoI	GCNNNNNNNGC	7 cut(s)	63, 68, 72, 89, 361, 464, 971
NaeI	GCCGGC	1 cut(s)	64
NdeI	CATATG	3 cut(s)	246, 814, 853
NgoMIV	GCCGGC	1 cut(s)	62
NlaIII	CATG	5 cut(s)	320, 424, 457, 554, 1277
NlaIV	GGNNCC	2 cut(s)	46, 314
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	1025
PagI	TCATGA	1 cut(s)	550
PctI	GAATGC	1 cut(s)	469
PdiI	GCCGGC	1 cut(s)	64
PfeI	GAWTC	5 cut(s)	176, 897, 943, 1130, 1188
PkrI	GCNGC	3 cut(s)	11, 258, 1144
PshAI	GACNNNNGTC	1 cut(s)	1038
Psp124BI	GAGCTC	1 cut(s)	420
Psp6I	CCWGG	2 cut(s)	691, 946
PspFI	CCCAGC	1 cut(s)	390
PspGI	CCWGG	2 cut(s)	691, 946
PspN4I	GGNNCC	2 cut(s)	46, 314
PspPI	GGNCC	1 cut(s)	313
PsuI	RGATCY	4 cut(s)	155, 215, 887, 903
RsaI	GTAC	4 cut(s)	5, 915, 1265, 1290
RsaNI	GTAC	4 cut(s)	4, 914, 1264, 1289
RseI	CAYNNNNRTG	1 cut(s)	842
SacI	GAGCTC	1 cut(s)	420
SaqAI	TTAA	4 cut(s)	384, 1017, 1097, 1152
SatI	GCNGC	3 cut(s)	10, 257, 1143
Sau96I	GGNCC	1 cut(s)	313
ScrFI	CCNGG	2 cut(s)	693, 948
SduI	GDGCHC	2 cut(s)	420, 1304
SfaNI	GCATC	6 cut(s)	70, 283, 364, 494, 1077, 1091
SfcI	CTRYAG	1 cut(s)	534
SinI	GGWCC	1 cut(s)	313
SmiMI	CAYNNNNRTG	1 cut(s)	842
SmlI	CTYRAG	2 cut(s)	219, 1109
SmoI	CTYRAG	2 cut(s)	219, 1109
Sse9I	AATT	7 cut(s)	117, 203, 602, 765, 876, 882, 1046
SsiI	CCGC	2 cut(s)	9, 522
SspMI	CTAG	1 cut(s)	1146
SstI	GAGCTC	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	691, 946
StyI	CCWWGG	3 cut(s)	87, 189, 1254
TaaI	ACNGT	4 cut(s)	518, 538, 918, 1095
TaiI	ACGT	1 cut(s)	1032
TaqI	TCGA	2 cut(s)	36, 1085
TasI	AATT	7 cut(s)	117, 203, 602, 765, 876, 882, 1046
TatI	WGTACW	2 cut(s)	913, 1288
TauI	GCSGC	1 cut(s)	12
TfiI	GAWTC	5 cut(s)	176, 897, 943, 1130, 1188
Tru1I	TTAA	4 cut(s)	384, 1017, 1097, 1152
Tru9I	TTAA	4 cut(s)	384, 1017, 1097, 1152
TscAI	CASTG	3 cut(s)	523, 778, 1198
TseFI	GTSAC	1 cut(s)	1025
TseI	GCWGC	2 cut(s)	256, 1142
Tsp45I	GTSAC	1 cut(s)	1025
TspDTI	ATGAA	6 cut(s)	153, 442, 539, 657, 834, 1221
TspGWI	ACGGA	2 cut(s)	214, 1028
TspRI	CASTG	3 cut(s)	523, 778, 1198
VpaK11BI	GGWCC	1 cut(s)	313
XagI	CCTNNNNNAGG	1 cut(s)	594
XapI	RAATTY	1 cut(s)	602
XmiI	GTMKAC	1 cut(s)	1060
XspI	CTAG	1 cut(s)	1146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.