Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0014110

Physical Location & Seq

Genomic Coordinates Reverse (-)

23604889 .. 23613205

Gene Structure 8317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033127

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGATGAGGTATCGGCCATCGTAATCGACCTCGGCTCCCACACTTGCAAGGCCGGCTATGCCGGCGAAGATGCGCCCAAGGCTGTTTTTCCATCGGTTGTTGGGTCAATTGATCAAATGGAAGTTGATGAAACTGAAAACTCTGGATCTGCTGATCCAAAAAGTGATTCTGACAAAACCAAGGGAAAACGGAAATTATATGTAGGATCTCAAGCTTTAGGATATCGTCGGGATCATATGGAGGTGCTGCCCCCCATAAAGGATGGAGTTGTTGTTGACTGGGAGGCTGTGGAGGGTATATGGGACCATGCTTTTAGGGACTGCCTATTGGTTGATCCCAAAGAGCATCCAATGCTACTTGCAGAGCCATCTTTTAACTCCCAGCAACAGAGAGAAAGAACGGCAGAGCTCATGTTTGAAAAATACAAAGTTCCTGCTTTATTCATGGCTAAGAATGCTGTTCTCACATCTTTTGCATCTGGCCGTGCTACCTCGTTGGTAGTTGACAGTGGCGGAGGATCAACTACAGTTGCTCCAGTTCATGATGGTTATGTTCTCCAAAAGGCTGTGTCATCCTCTCCTATTGGAGGAGAATTTCTGACTGATTGTTTGATGAAAAGTTTGGAAAGTAAAGGAATGATGATCAAACCCAGATATTCATTCAAGAGAAAGGAAACACGACCTGGAGAGTTTCAGGTTGTAGATGTTGATTTTCCAAACACCACAGAGAGCTACAAGCTCTATTCCAAGAGGATAATTGCTAGTGATATCAAGGAATGTGTGTGCAGAGCGCCTGACACTCCATATGATGAAAGTTCATATTCAAACATTCCAATGACCCCATATGAGCTTCCTGATGGCCAGACAATTGAAATTGGATCTGATAGATTCAAGATCCCTGATGTACTGTTTAACCCATCCTTAGCTCAGACGATTCCTGGTATGGAGAGTTTTGCGGAGATTGCTCCTTCTCTTCGTGGTTTACCTCAAATGGTTATAGACAGCATTAACAAGTGTGACGTGGACATCCGTCGTGAATTATTTAGTAGTATACTGCTTGCTGGTGGCACAGCATCGATGCAACAATTAAAGGAACGCCTTGAGAAAGACTTGCTGGAGGAATCTCCCCAAGCTGCTAGAGTTAAAGTATTGGCAAGTGGAAATGCAACAGAAAGGCGATTCAGTGTTTGGATAGGTGGCAGTATATTGGCTTCTCTTGGTTCATTCCAGCAGATGTGGTTCTCCAAGGCTGAGTACGAGGAGCATGGGGCTTCTTATGTACAAAGAAAGTGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006325 GO:0006996 GO:0007010 GO:0007275 GO:0007276 GO:0008150 GO:0009314 GO:0009416 GO:0009555 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016043 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048571 GO:0048573 GO:0048574 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051276 GO:0051704 GO:0055046 GO:0061458 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04714 ko05225 map04714 map05225

Pfam Domains

Protein Families

Actin

Protein Analysis

433

Amino Acids

47.64

Weight (kDa)

5.14

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	1 - 431	1.2e-161	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18450
fragaria_vesca	FvH4_3g17390 FvH4_6g50670
malus_domestica	MD03G1252000.v1.1 MD11G1273400.v1.1
prunus_persica	Prupe.4G154200_v2.0.a1
pyrus_communis	pycom03g19950
rosa_chinensis	RchiOBHm_Chr5g0028921
rosa_laevigata	RLG00000033127
rosa_multiflora	Rmu_sc0005178.1_g000021
rosa_roxburghii	Rroxscaffold_1G00050990
rosa_rugosa	Rorug05G0111500
rosa_samantha	Rh5AG203800 Rh5BG202100 Rh5CG222800 Rh5DG205400
rosa_wichuraiana	Rw5G018450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1051
AciI	CCGC	2 cut(s)	513, 956
AclWI	GGATC	8 cut(s)	149, 154, 214, 240, 329, 526, 886, 889
AcoI	YGGCCR	3 cut(s)	15, 481, 859
AcsI	RAATTY	1 cut(s)	593
AfaI	GTAC	3 cut(s)	906, 1256, 1281
AfiI	CCNNNNNNNGG	2 cut(s)	259, 587
AgsI	TTSAA	5 cut(s)	419, 664, 825, 872, 892
AjiI	CACGTC	1 cut(s)	1021
AjnI	CCWGG	2 cut(s)	682, 937
AjuI	GAANNNNNNNTTGG	2 cut(s)	151, 183
AluBI	AGCT	7 cut(s)	215, 409, 732, 739, 850, 926, 1133
AluI	AGCT	7 cut(s)	215, 409, 732, 739, 850, 926, 1133
Alw21I	GWGCWC	1 cut(s)	411
AlwI	GGATC	8 cut(s)	149, 154, 214, 240, 329, 526, 886, 889
AoxI	GGCC	4 cut(s)	15, 51, 481, 859
ApeKI	GCWGC	2 cut(s)	247, 1133
ApoI	RAATTY	1 cut(s)	593
ArsI	GACNNNNNNTTYG	2 cut(s)	592, 624
AspLEI	GCGC	2 cut(s)	76, 793
AspS9I	GGNCC	1 cut(s)	304
AvaII	GGWCC	1 cut(s)	304
BaeGI	GKGCMC	1 cut(s)	1295
BalI	TGGCCA	1 cut(s)	861
BanII	GRGCYC	1 cut(s)	411
BarI	GAAGNNNNNNTAC	2 cut(s)	1195, 1227
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	2 cut(s)	234, 1120
BccI	CCATC	7 cut(s)	26, 100, 257, 376, 539, 851, 925
BceAI	ACGGC	2 cut(s)	417, 468
BciT130I	CCWGG	2 cut(s)	684, 939
BclI	TGATCA	2 cut(s)	112, 642
BfaI	CTAG	2 cut(s)	762, 1137
BfmI	CTRYAG	1 cut(s)	525
BfoI	RGCGCY	1 cut(s)	794
BisI	GCNGC	2 cut(s)	248, 1134
BlsI	GCNGC	2 cut(s)	249, 1135
Bme1390I	CCNGG	2 cut(s)	684, 939
Bme18I	GGWCC	1 cut(s)	304
BmgBI	CACGTC	1 cut(s)	1021
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	2 cut(s)	37, 305
BmrFI	CCNGG	2 cut(s)	684, 939
BmrI	ACTGGG	1 cut(s)	289
BmsI	GCATC	5 cut(s)	61, 355, 485, 1068, 1082
BmuI	ACTGGG	1 cut(s)	289
BoxI	GACNNNNGTC	1 cut(s)	1029
BpmI	CTGGAG	3 cut(s)	519, 705, 1136
Bpu10I	CCTNAGC	1 cut(s)	922
BpuEI	CTTGAG	2 cut(s)	195, 1121
Bsa29I	ATCGAT	1 cut(s)	1076
BsaJI	CCNNGG	4 cut(s)	31, 78, 180, 1245
BsaXI	ACNNNNNCTCC	6 cut(s)	20, 50, 258, 288, 517, 547
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 587
Bse118I	RCCGGY	2 cut(s)	53, 62
Bse1I	ACTGG	2 cut(s)	284, 536
BseBI	CCWGG	2 cut(s)	684, 939
BseCI	ATCGAT	1 cut(s)	1076
BseDI	CCNNGG	4 cut(s)	31, 78, 180, 1245
BseGI	GGATG	6 cut(s)	10, 268, 346, 572, 917, 1026
BseLI	CCNNNNNNNGG	2 cut(s)	259, 587
BseMII	CTCAG	2 cut(s)	941, 1242
BseNI	ACTGG	2 cut(s)	284, 536
BseRI	GAGGAG	2 cut(s)	603, 1274
BseSI	GKGCMC	1 cut(s)	1295
BseXI	GCAGC	2 cut(s)	234, 1120
BseYI	CCCAGC	1 cut(s)	381
BsgI	GTGCAG	1 cut(s)	805
BshFI	GGCC	4 cut(s)	17, 53, 483, 861
BshVI	ATCGAT	1 cut(s)	1076
BsiHKAI	GWGCWC	1 cut(s)	411
BsiSI	CCGG	2 cut(s)	54, 63
BslFI	GGGAC	2 cut(s)	317, 332
BslI	CCNNNNNNNGG	2 cut(s)	259, 587
BsmFI	GGGAC	2 cut(s)	317, 332
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	4 cut(s)	17, 53, 483, 861
Bsp1286I	GDGCHC	2 cut(s)	411, 1295
Bsp1407I	TGTACA	1 cut(s)	1279
BspACI	CCGC	2 cut(s)	513, 956
BspANI	GGCC	4 cut(s)	17, 53, 483, 861
BspCNI	CTCAG	2 cut(s)	940, 1243
BspDI	ATCGAT	1 cut(s)	1076
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	2 cut(s)	37, 305
BspPI	GGATC	8 cut(s)	149, 154, 214, 240, 329, 526, 886, 889
BsrFI	RCCGGY	2 cut(s)	53, 62
BsrGI	TGTACA	1 cut(s)	1279
BsrI	ACTGG	2 cut(s)	284, 536
BssAI	RCCGGY	2 cut(s)	53, 62
BssECI	CCNNGG	4 cut(s)	31, 78, 180, 1245
BssNAI	GTATAC	1 cut(s)	1052
BssT1I	CCWWGG	3 cut(s)	78, 180, 1245
Bst1107I	GTATAC	1 cut(s)	1052
Bst2UI	CCWGG	2 cut(s)	684, 939
Bst4CI	ACNGT	3 cut(s)	509, 529, 909
Bst6I	CTCTTC	1 cut(s)	978
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstAUI	TGTACA	1 cut(s)	1279
BstC8I	GCNNGC	3 cut(s)	55, 64, 1059
BstDEI	CTNAG	4 cut(s)	450, 922, 927, 1251
BstENI	CCTNNNNNAGG	1 cut(s)	585
BstF5I	GGATG	6 cut(s)	10, 268, 346, 572, 917, 1026
BstH2I	RGCGCY	1 cut(s)	794
BstHHI	GCGC	2 cut(s)	76, 793
BstMWI	GCNNNNNNNGC	7 cut(s)	54, 59, 63, 80, 352, 455, 962
BstNI	CCWGG	2 cut(s)	684, 939
BstPAI	GACNNNNGTC	1 cut(s)	1029
BstSCI	CCNGG	2 cut(s)	682, 937
BstSFI	CTRYAG	1 cut(s)	525
BstSLI	GKGCMC	1 cut(s)	1295
BstV1I	GCAGC	2 cut(s)	234, 1120
BstX2I	RGATCY	4 cut(s)	146, 206, 878, 894
BstYI	RGATCY	4 cut(s)	146, 206, 878, 894
BstZ17I	GTATAC	1 cut(s)	1052
Bsu15I	ATCGAT	1 cut(s)	1076
BsuRI	GGCC	4 cut(s)	17, 53, 483, 861
BsuTUI	ATCGAT	1 cut(s)	1076
BtrI	CACGTC	1 cut(s)	1021
BtsCI	GGATG	6 cut(s)	10, 268, 346, 572, 917, 1026
BtsIMutI	CAGTG	2 cut(s)	514, 1189
Cac8I	GCNNGC	3 cut(s)	55, 64, 1059
CciI	TCATGA	1 cut(s)	541
CfoI	GCGC	2 cut(s)	76, 793
Cfr10I	RCCGGY	2 cut(s)	53, 62
Cfr13I	GGNCC	1 cut(s)	304
ClaI	ATCGAT	1 cut(s)	1076
Csp6I	GTAC	3 cut(s)	905, 1255, 1280
CviAII	CATG	5 cut(s)	308, 412, 445, 542, 1265
CviQI	GTAC	3 cut(s)	905, 1255, 1280
DdeI	CTNAG	4 cut(s)	450, 922, 927, 1251
EaeI	YGGCCR	3 cut(s)	15, 481, 859
Eam1104I	CTCTTC	1 cut(s)	978
EarI	CTCTTC	1 cut(s)	978
EciI	GGCGGA	1 cut(s)	528
Ecl136II	GAGCTC	1 cut(s)	409
Eco130I	CCWWGG	3 cut(s)	78, 180, 1245
Eco24I	GRGCYC	1 cut(s)	411
Eco32I	GATATC	2 cut(s)	224, 769
Eco47I	GGWCC	1 cut(s)	304
Eco53kI	GAGCTC	1 cut(s)	409
EcoICRI	GAGCTC	1 cut(s)	409
EcoNI	CCTNNNNNAGG	1 cut(s)	585
EcoRII	CCWGG	2 cut(s)	682, 937
EcoRV	GATATC	2 cut(s)	224, 769
EcoT14I	CCWWGG	3 cut(s)	78, 180, 1245
EcoT38I	GRGCYC	1 cut(s)	411
ErhI	CCWWGG	3 cut(s)	78, 180, 1245
FaeI	CATG	5 cut(s)	311, 415, 448, 545, 1268
FaqI	GGGAC	2 cut(s)	317, 332
FatI	CATG	5 cut(s)	307, 411, 444, 541, 1264
FauNDI	CATATG	3 cut(s)	237, 805, 844
FbaI	TGATCA	2 cut(s)	112, 642
FblI	GTMKAC	1 cut(s)	1051
Fnu4HI	GCNGC	2 cut(s)	248, 1134
FokI	GGATG	6 cut(s)	17, 275, 333, 559, 904, 1013
FriOI	GRGCYC	1 cut(s)	411
Fsp4HI	GCNGC	2 cut(s)	248, 1134
FspBI	CTAG	2 cut(s)	762, 1137
GlaI	GCGC	2 cut(s)	75, 792
GluI	GCNGC	2 cut(s)	248, 1134
GsaI	CCCAGC	1 cut(s)	385
GsuI	CTGGAG	3 cut(s)	519, 705, 1136
HaeII	RGCGCY	1 cut(s)	794
HaeIII	GGCC	4 cut(s)	17, 53, 483, 861
HapII	CCGG	2 cut(s)	54, 63
HhaI	GCGC	2 cut(s)	76, 793
Hin1II	CATG	5 cut(s)	311, 415, 448, 545, 1268
Hin6I	GCGC	2 cut(s)	74, 791
HinP1I	GCGC	2 cut(s)	74, 791
HincII	GTYRAC	2 cut(s)	277, 505
HindII	GTYRAC	2 cut(s)	277, 505
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	5 cut(s)	167, 888, 934, 1121, 1179
HpaII	CCGG	2 cut(s)	54, 63
Hpy166II	GTNNAC	5 cut(s)	277, 505, 983, 1024, 1052
Hpy188I	TCNGA	4 cut(s)	172, 600, 883, 930
Hpy188III	TCNNGA	7 cut(s)	144, 230, 542, 664, 854, 892, 1034
Hpy8I	GTNNAC	5 cut(s)	277, 505, 983, 1024, 1052
Hpy99I	CGWCG	2 cut(s)	231, 1035
HpyAV	CCTTC	1 cut(s)	978
HpyCH4III	ACNGT	3 cut(s)	509, 529, 909
HpyCH4IV	ACGT	1 cut(s)	1020
HpyCH4V	TGCA	6 cut(s)	48, 362, 476, 786, 1081, 1166
HpyF10VI	GCNNNNNNNGC	7 cut(s)	54, 59, 63, 80, 352, 455, 962
HpyF3I	CTNAG	4 cut(s)	450, 922, 927, 1251
HpySE526I	ACGT	1 cut(s)	1020
Hsp92II	CATG	5 cut(s)	311, 415, 448, 545, 1268
HspAI	GCGC	2 cut(s)	74, 791
KroI	GCCGGC	2 cut(s)	53, 62
KroNI	GCCGGC	2 cut(s)	55, 64
Ksp22I	TGATCA	2 cut(s)	112, 642
LmnI	GCTCC	4 cut(s)	41, 538, 970, 1261
Lsp1109I	GCAGC	2 cut(s)	234, 1120
LweI	GCATC	5 cut(s)	61, 355, 485, 1068, 1082
MaeI	CTAG	2 cut(s)	762, 1137
MaeII	ACGT	1 cut(s)	1020
MaeIII	GTNAC	1 cut(s)	1016
MboII	GAAGA	2 cut(s)	80, 965
MfeI	CAATTG	2 cut(s)	108, 867
MflI	RGATCY	4 cut(s)	146, 206, 878, 894
MhlI	GDGCHC	2 cut(s)	411, 1295
MlsI	TGGCCA	1 cut(s)	861
MluCI	AATT	8 cut(s)	108, 194, 593, 756, 867, 873, 1037, 1085
MluNI	TGGCCA	1 cut(s)	861
Mox20I	TGGCCA	1 cut(s)	861
MroNI	GCCGGC	2 cut(s)	53, 62
MscI	TGGCCA	1 cut(s)	861
MseI	TTAA	5 cut(s)	375, 912, 1008, 1088, 1143
MslI	CAYNNNNRTG	1 cut(s)	833
Msp20I	TGGCCA	1 cut(s)	861
MspI	CCGG	2 cut(s)	54, 63
MspR9I	CCNGG	2 cut(s)	684, 939
MunI	CAATTG	2 cut(s)	108, 867
Mva1269I	GAATGC	1 cut(s)	460
MvaI	CCWGG	2 cut(s)	684, 939
MwoI	GCNNNNNNNGC	7 cut(s)	54, 59, 63, 80, 352, 455, 962
NaeI	GCCGGC	2 cut(s)	55, 64
NdeI	CATATG	3 cut(s)	237, 805, 844
NgoMIV	GCCGGC	2 cut(s)	53, 62
NlaIII	CATG	5 cut(s)	311, 415, 448, 545, 1268
NlaIV	GGNNCC	2 cut(s)	37, 305
NmeAIII	GCCGAG	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	1016
PagI	TCATGA	1 cut(s)	541
PctI	GAATGC	1 cut(s)	460
PdiI	GCCGGC	2 cut(s)	55, 64
PfeI	GAWTC	5 cut(s)	167, 888, 934, 1121, 1179
PkrI	GCNGC	2 cut(s)	249, 1135
PshAI	GACNNNNGTC	1 cut(s)	1029
Psp124BI	GAGCTC	1 cut(s)	411
Psp6I	CCWGG	2 cut(s)	682, 937
PspFI	CCCAGC	1 cut(s)	381
PspGI	CCWGG	2 cut(s)	682, 937
PspN4I	GGNNCC	2 cut(s)	37, 305
PspPI	GGNCC	1 cut(s)	304
PsuI	RGATCY	4 cut(s)	146, 206, 878, 894
RsaI	GTAC	3 cut(s)	906, 1256, 1281
RsaNI	GTAC	3 cut(s)	905, 1255, 1280
RseI	CAYNNNNRTG	1 cut(s)	833
SacI	GAGCTC	1 cut(s)	411
SaqAI	TTAA	5 cut(s)	375, 912, 1008, 1088, 1143
SatI	GCNGC	2 cut(s)	248, 1134
Sau96I	GGNCC	1 cut(s)	304
ScrFI	CCNGG	2 cut(s)	684, 939
SduI	GDGCHC	2 cut(s)	411, 1295
SfaNI	GCATC	5 cut(s)	61, 355, 485, 1068, 1082
SfcI	CTRYAG	1 cut(s)	525
SinI	GGWCC	1 cut(s)	304
SmiMI	CAYNNNNRTG	1 cut(s)	833
SmlI	CTYRAG	2 cut(s)	210, 1100
SmoI	CTYRAG	2 cut(s)	210, 1100
Sse9I	AATT	8 cut(s)	108, 194, 593, 756, 867, 873, 1037, 1085
SsiI	CCGC	2 cut(s)	513, 956
SspMI	CTAG	2 cut(s)	762, 1137
SstI	GAGCTC	1 cut(s)	411
StyD4I	CCNGG	2 cut(s)	682, 937
StyI	CCWWGG	3 cut(s)	78, 180, 1245
TaaI	ACNGT	3 cut(s)	509, 529, 909
TaiI	ACGT	1 cut(s)	1023
TaqI	TCGA	2 cut(s)	27, 1076
TasI	AATT	8 cut(s)	108, 194, 593, 756, 867, 873, 1037, 1085
TatI	WGTACW	2 cut(s)	904, 1279
TfiI	GAWTC	5 cut(s)	167, 888, 934, 1121, 1179
Tru1I	TTAA	5 cut(s)	375, 912, 1008, 1088, 1143
Tru9I	TTAA	5 cut(s)	375, 912, 1008, 1088, 1143
TscAI	CASTG	2 cut(s)	514, 1189
TseFI	GTSAC	1 cut(s)	1016
TseI	GCWGC	2 cut(s)	247, 1133
Tsp45I	GTSAC	1 cut(s)	1016
TspDTI	ATGAA	8 cut(s)	144, 433, 530, 629, 648, 807, 825, 1212
TspGWI	ACGGA	2 cut(s)	205, 1019
TspRI	CASTG	2 cut(s)	514, 1189
VpaK11BI	GGWCC	1 cut(s)	304
XagI	CCTNNNNNAGG	1 cut(s)	585
XapI	RAATTY	1 cut(s)	593
XmiI	GTMKAC	1 cut(s)	1051
XspI	CTAG	2 cut(s)	762, 1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.