MD11G1273400.v1.1

Belongs to the actin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
38997428 .. 39010639
13212 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1273400.v1.1.491

Sequence Viewer

Length: 1335 bp
ATGTACGGAGGCGATGAGGTATCAGCTATCATCCTCGACCTCGGCTCCCACACTTGCAAAGCCGGCTATGCTGGCGAAGATGTGCCCAAGGCCGTCTTCCCTTCCGTTGTTGGGTCAATTGATCAAATGGAAGTTGATGCAACTGAAATGGAAAACAACTCTGGACCTGCTGTAGAACCAAAGAATAATTCAAAATCTCTTGATTCTGACAAAGCCAAGGGAAAGCGCAAATTATATGTAGGATCTCAAGCCTTAGGGTACCGTCGGGATCATATGGAGGTGCTGTCATCCATAAAGGATGGAGTTGTTGTTGACTGGGATGCTGTGGAGAGTATATGGGACCATGCTTTTAGGGAATGTCTATTGGTTGATCCCAAAGAGCATCCAATGCTACTTGCAGAGCCATCTTCAAACACTCAACAACAAAGAGAAAGGACGGCAGAGCTTATGTTCGAAAAGTACAAAGTTCCTGCCTTATTTTTGGCCAAGAATGCTGTTCTCACATCGTTTGCATCAGGTCGAGCTACCTCATTAGTAGTTGATAGTGGTGGAGGATCAACTACAGTTGCTCCAGTTCATGATGGCTATGTTCTTCAAAAGGCTGTGTCATCTTCTCCTATTGGGGGAGAGTTTCTTACTGATTGTTTGACAAAAAGTTTGGAAAGTAAAGGCATGACAATTAAACCCAGATATTCTTTTAAGAGAAAGGAAACACGACCTGGAGAGTTTCAGGTAGTAGACGTTGATTTTCCAAATACCACAGAAAGCTACAGACTCTATGCCCAGAGGATAATTGCTAGTGACATCAAAGAATGCGTGTGTAGAGCCCCAGACACTCCATATGATGAAATCGCATATTCAAACATTCCAATGACCTCATACGAGCTTCCTGATGGCCAGACAATTGAAATCGGAGCTGATAGATTCAAGATTCCTGATATTCTCTTTAACCCATCCTTGGCTCAGACAATTCCTGGTATGGAGCATTTTGCAGAGATTGCTCCCACTGTTCGTGGTCTGCCACAAATGGTTATCGAGAGCATTAACAAGTGTGATGTGGACATCCGGCGTGAATTGTTTAGTAGTATACTGCTTGCCGGTGGTACAGCATCAATGCAACAGTTAAAGGAACGCCTTGAGAAAGACATGCTGGAGGAGTCCCCTCAAGCTGCTAGAGTTAAAGTATTGGTGGCCGGGAATTCAACCGAAAGGCGATTCAGTGTTTGGATAGGCGGAAGTATATTGGCGTCTCTCGGTTCATTCCAGCAAATGTGGTTCTCCAAGGCTGAGTACGAGGAGCATGGGGCTTCCTACATACAACGAAAGTGCCCTTAA

Protein Analysis

445

Amino Acids

48.95

Weight (kDa)

5.2

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Actin PF00022 4 - 443 2.3e-160 Actin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18450
fragaria_vesca FvH4_3g17390 FvH4_6g50670
malus_domestica MD03G1252000.v1.1 MD11G1273400.v1.1
prunus_persica Prupe.4G154200_v2.0.a1
pyrus_communis pycom03g19950
rosa_chinensis RchiOBHm_Chr5g0028921
rosa_laevigata RLG00000033127
rosa_multiflora Rmu_sc0005178.1_g000021
rosa_roxburghii Rroxscaffold_1G00050990
rosa_rugosa Rorug05G0111500
rosa_samantha Rh5AG203800 Rh5BG202100 Rh5CG222800 Rh5DG205400
rosa_wichuraiana Rw5G018450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 175
Acc65I GGTACC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 258
AccI GTMKAC 2 cut(s) 738, 1087
AciI CCGC 1 cut(s) 1233
AclWI GGATC 4 cut(s) 250, 276, 365, 562
AcoI YGGCCR 3 cut(s) 483, 895, 1191
AcsI RAATTY 1 cut(s) 1198
AcyI GRCGYC 1 cut(s) 1247
AfaI GTAC 5 cut(s) 5, 260, 461, 1105, 1292
AfiI CCNNNNNNNGG 3 cut(s) 111, 623, 958
AgsI TTSAA 7 cut(s) 192, 411, 596, 861, 908, 928, 1203
AjnI CCWGG 2 cut(s) 718, 973
AjuI GAANNNNNNNTTGG 4 cut(s) 80, 112, 172, 204
AluBI AGCT 7 cut(s) 26, 445, 524, 768, 886, 917, 1169
AluI AGCT 7 cut(s) 26, 445, 524, 768, 886, 917, 1169
Alw26I GTCTC 1 cut(s) 1254
AlwI GGATC 4 cut(s) 250, 276, 365, 562
AoxI GGCC 4 cut(s) 90, 483, 895, 1191
ApeKI GCWGC 1 cut(s) 1169
ApoI RAATTY 1 cut(s) 1198
ArsI GACNNNNNNTTYG 2 cut(s) 640, 672
Asp718I GGTACC 1 cut(s) 258
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 2 cut(s) 164, 340
AsuC2I CCSGG 1 cut(s) 1195
AsuII TTCGAA 1 cut(s) 453
AvaII GGWCC 2 cut(s) 164, 340
AxyI CCTNAGG 1 cut(s) 253
BaeGI GKGCMC 2 cut(s) 87, 1331
BalI TGGCCA 2 cut(s) 485, 897
BanI GGYRCC 1 cut(s) 258
BanII GRGCYC 1 cut(s) 829
BbsI GAAGAC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 1156
BccI CCATC 5 cut(s) 293, 412, 575, 887, 961
BceAI ACGGC 2 cut(s) 77, 453
BciT130I CCWGG 2 cut(s) 720, 975
BclI TGATCA 1 cut(s) 121
BcnI CCSGG 1 cut(s) 1195
BcoDI GTCTC 1 cut(s) 1254
BfaI CTAG 2 cut(s) 798, 1173
BfmI CTRYAG 3 cut(s) 171, 561, 769
BfuAI ACCTGC 1 cut(s) 175
BisI GCNGC 1 cut(s) 1170
BlsI GCNGC 1 cut(s) 1171
Bme1390I CCNGG 3 cut(s) 720, 975, 1195
Bme18I GGWCC 2 cut(s) 164, 340
BmgT120I GGNCC 2 cut(s) 164, 340
BmiI GGNNCC 3 cut(s) 46, 260, 341
BmrFI CCNGG 3 cut(s) 720, 975, 1195
BmrI ACTGGG 1 cut(s) 325
BmsI GCATC 5 cut(s) 127, 310, 391, 521, 1118
BmuI ACTGGG 1 cut(s) 325
BpiI GAAGAC 1 cut(s) 88
BpmI CTGGAG 3 cut(s) 555, 741, 1172
Bpu14I TTCGAA 1 cut(s) 453
BpuEI CTTGAG 3 cut(s) 231, 1149, 1157
BpuMI CCSGG 1 cut(s) 1195
BsaHI GRCGYC 1 cut(s) 1247
BsaJI CCNNGG 5 cut(s) 40, 87, 216, 957, 1281
BsaXI ACNNNNNCTCC 8 cut(s) 29, 59, 269, 294, 299, 324, 553, 583
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 623, 958
Bse118I RCCGGY 2 cut(s) 62, 1097
Bse1I ACTGG 2 cut(s) 320, 572
Bse21I CCTNAGG 1 cut(s) 253
BseBI CCWGG 2 cut(s) 720, 975
BseDI CCNNGG 5 cut(s) 40, 87, 216, 957, 1281
BseGI GGATG 7 cut(s) 30, 287, 304, 325, 382, 953, 1062
BseLI CCNNNNNNNGG 3 cut(s) 111, 623, 958
BseMII CTCAG 2 cut(s) 977, 1278
BseNI ACTGG 2 cut(s) 320, 572
BseRI GAGGAG 2 cut(s) 1169, 1310
BseSI GKGCMC 2 cut(s) 87, 1331
BseXI GCAGC 1 cut(s) 1156
BshFI GGCC 4 cut(s) 92, 485, 897, 1193
BshNI GGYRCC 1 cut(s) 258
BsiSI CCGG 4 cut(s) 63, 1066, 1098, 1194
BslFI GGGAC 2 cut(s) 353, 1144
BslI CCNNNNNNNGG 3 cut(s) 111, 623, 958
BsmAI GTCTC 1 cut(s) 1254
BsmBI CGTCTC 1 cut(s) 1254
BsmFI GGGAC 2 cut(s) 353, 1144
BsmI GAATGC 2 cut(s) 496, 818
BsnI GGCC 4 cut(s) 92, 485, 897, 1193
Bsp119I TTCGAA 1 cut(s) 453
Bsp1286I GDGCHC 3 cut(s) 87, 829, 1331
Bsp143I GATC 5 cut(s) 121, 242, 268, 370, 554
BspACI CCGC 1 cut(s) 1233
BspANI GGCC 4 cut(s) 92, 485, 897, 1193
BspCNI CTCAG 2 cut(s) 976, 1279
BspHI TCATGA 1 cut(s) 577
BspLI GGNNCC 3 cut(s) 46, 260, 341
BspMI ACCTGC 1 cut(s) 175
BspPI GGATC 4 cut(s) 250, 276, 365, 562
BspT104I TTCGAA 1 cut(s) 453
BspT107I GGYRCC 1 cut(s) 258
BsrFI RCCGGY 2 cut(s) 62, 1097
BsrI ACTGG 2 cut(s) 320, 572
BssAI RCCGGY 2 cut(s) 62, 1097
BssECI CCNNGG 5 cut(s) 40, 87, 216, 957, 1281
BssMI GATC 5 cut(s) 121, 242, 268, 370, 554
BssNAI GTATAC 1 cut(s) 1088
BssNI GRCGYC 1 cut(s) 1247
BssT1I CCWWGG 4 cut(s) 87, 216, 957, 1281
Bst1107I GTATAC 1 cut(s) 1088
Bst2UI CCWGG 2 cut(s) 720, 975
Bst4CI ACNGT 4 cut(s) 263, 565, 1009, 1122
BstACI GRCGYC 1 cut(s) 1247
BstAPI GCANNNNNTGC 2 cut(s) 388, 998
BstBI TTCGAA 1 cut(s) 453
BstC8I GCNNGC 3 cut(s) 64, 73, 1095
BstDEI CTNAG 3 cut(s) 253, 963, 1287
BstF5I GGATG 7 cut(s) 30, 287, 304, 325, 382, 953, 1062
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 5 cut(s) 124, 245, 271, 373, 557
BstMAI GTCTC 1 cut(s) 1254
BstMBI GATC 5 cut(s) 121, 242, 268, 370, 554
BstMWI GCNNNNNNNGC 6 cut(s) 63, 68, 72, 388, 491, 998
BstNI CCWGG 2 cut(s) 720, 975
BstNSI RCATGY 1 cut(s) 1150
BstSCI CCNGG 3 cut(s) 718, 973, 1193
BstSFI CTRYAG 3 cut(s) 171, 561, 769
BstSLI GKGCMC 2 cut(s) 87, 1331
BstV1I GCAGC 1 cut(s) 1156
BstV2I GAAGAC 1 cut(s) 88
BstX2I RGATCY 1 cut(s) 242
BstYI RGATCY 1 cut(s) 242
BstZ17I GTATAC 1 cut(s) 1088
Bsu36I CCTNAGG 1 cut(s) 253
BsuRI GGCC 4 cut(s) 92, 485, 897, 1193
BtgZI GCGATG 1 cut(s) 27
BtsCI GGATG 7 cut(s) 30, 287, 304, 325, 382, 953, 1062
BtsIMutI CAGTG 2 cut(s) 1005, 1225
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 3 cut(s) 64, 73, 1095
CciI TCATGA 1 cut(s) 577
CfoI GCGC 1 cut(s) 228
Cfr10I RCCGGY 2 cut(s) 62, 1097
Cfr13I GGNCC 2 cut(s) 164, 340
CseI GACGC 1 cut(s) 1236
Csp6I GTAC 5 cut(s) 4, 259, 460, 1104, 1291
CviAII CATG 5 cut(s) 344, 578, 673, 1147, 1301
CviQI GTAC 5 cut(s) 4, 259, 460, 1104, 1291
DdeI CTNAG 3 cut(s) 253, 963, 1287
DpnI GATC 5 cut(s) 123, 244, 270, 372, 556
DpnII GATC 5 cut(s) 121, 242, 268, 370, 554
EaeI YGGCCR 3 cut(s) 483, 895, 1191
EciI GGCGGA 1 cut(s) 1248
Eco130I CCWWGG 4 cut(s) 87, 216, 957, 1281
Eco24I GRGCYC 1 cut(s) 829
Eco47I GGWCC 2 cut(s) 164, 340
Eco81I CCTNAGG 1 cut(s) 253
EcoRI GAATTC 1 cut(s) 1198
EcoRII CCWGG 2 cut(s) 718, 973
EcoT14I CCWWGG 4 cut(s) 87, 216, 957, 1281
EcoT38I GRGCYC 1 cut(s) 829
ErhI CCWWGG 4 cut(s) 87, 216, 957, 1281
Esp3I CGTCTC 1 cut(s) 1254
FaeI CATG 5 cut(s) 347, 581, 676, 1150, 1304
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 2 cut(s) 353, 1144
FatI CATG 5 cut(s) 343, 577, 672, 1146, 1300
FauNDI CATATG 2 cut(s) 273, 841
FbaI TGATCA 1 cut(s) 121
FblI GTMKAC 2 cut(s) 738, 1087
Fnu4HI GCNGC 1 cut(s) 1170
FokI GGATG 7 cut(s) 17, 274, 311, 332, 369, 940, 1049
FriOI GRGCYC 1 cut(s) 829
Fsp4HI GCNGC 1 cut(s) 1170
FspBI CTAG 2 cut(s) 798, 1173
GlaI GCGC 1 cut(s) 227
GluI GCNGC 1 cut(s) 1170
GsuI CTGGAG 3 cut(s) 555, 741, 1172
HaeIII GGCC 4 cut(s) 92, 485, 897, 1193
HapII CCGG 4 cut(s) 63, 1066, 1098, 1194
HgaI GACGC 1 cut(s) 1236
HhaI GCGC 1 cut(s) 228
Hin1I GRCGYC 1 cut(s) 1247
Hin1II CATG 5 cut(s) 347, 581, 676, 1150, 1304
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 6 cut(s) 203, 774, 924, 931, 1157, 1215
HpaII CCGG 4 cut(s) 63, 1066, 1098, 1194
Hpy166II GTNNAC 4 cut(s) 313, 739, 1060, 1088
Hpy188I TCNGA 3 cut(s) 208, 914, 966
Hpy188III TCNNGA 8 cut(s) 162, 200, 266, 578, 890, 928, 935, 1036
Hpy8I GTNNAC 4 cut(s) 313, 739, 1060, 1088
Hpy99I CGWCG 1 cut(s) 267
HpyAV CCTTC 1 cut(s) 111
HpyCH4III ACNGT 4 cut(s) 263, 565, 1009, 1122
HpyCH4IV ACGT 1 cut(s) 741
HpyCH4V TGCA 6 cut(s) 57, 140, 398, 512, 992, 1117
HpyF10VI GCNNNNNNNGC 6 cut(s) 63, 68, 72, 388, 491, 998
HpyF3I CTNAG 3 cut(s) 253, 963, 1287
HpySE526I ACGT 1 cut(s) 741
Hsp92I GRCGYC 1 cut(s) 1247
Hsp92II CATG 5 cut(s) 347, 581, 676, 1150, 1304
HspAI GCGC 1 cut(s) 226
KpnI GGTACC 1 cut(s) 262
KroI GCCGGC 1 cut(s) 62
KroNI GCCGGC 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 5 cut(s) 121, 242, 268, 370, 554
LmnI GCTCC 6 cut(s) 50, 574, 914, 982, 1006, 1297
Lsp1109I GCAGC 1 cut(s) 1156
LweI GCATC 5 cut(s) 127, 310, 391, 521, 1118
MaeI CTAG 2 cut(s) 798, 1173
MaeII ACGT 1 cut(s) 741
MaeIII GTNAC 1 cut(s) 800
MalI GATC 5 cut(s) 123, 244, 270, 372, 556
MboI GATC 5 cut(s) 121, 242, 268, 370, 554
MboII GAAGA 5 cut(s) 88, 89, 399, 584, 603
MfeI CAATTG 2 cut(s) 117, 903
MflI RGATCY 1 cut(s) 242
MhlI GDGCHC 3 cut(s) 87, 829, 1331
MlsI TGGCCA 2 cut(s) 485, 897
MluCI AATT 9 cut(s) 117, 187, 230, 678, 792, 903, 969, 1073, 1198
MluNI TGGCCA 2 cut(s) 485, 897
MlyI GAGTC 2 cut(s) 768, 1166
Mox20I TGGCCA 2 cut(s) 485, 897
MroNI GCCGGC 1 cut(s) 62
MscI TGGCCA 2 cut(s) 485, 897
MseI TTAA 7 cut(s) 681, 699, 948, 1044, 1124, 1179, 1333
MslI CAYNNNNRTG 1 cut(s) 869
Msp20I TGGCCA 2 cut(s) 485, 897
MspI CCGG 4 cut(s) 63, 1066, 1098, 1194
MspR9I CCNGG 3 cut(s) 720, 975, 1195
MunI CAATTG 2 cut(s) 117, 903
Mva1269I GAATGC 2 cut(s) 496, 818
MvaI CCWGG 2 cut(s) 720, 975
MwoI GCNNNNNNNGC 6 cut(s) 63, 68, 72, 388, 491, 998
NaeI GCCGGC 1 cut(s) 64
NciI CCSGG 1 cut(s) 1195
NdeI CATATG 2 cut(s) 273, 841
NdeII GATC 5 cut(s) 121, 242, 268, 370, 554
NgoMIV GCCGGC 1 cut(s) 62
NlaIII CATG 5 cut(s) 347, 581, 676, 1150, 1304
NlaIV GGNNCC 3 cut(s) 46, 260, 341
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 800
NspI RCATGY 1 cut(s) 1150
NspV TTCGAA 1 cut(s) 453
PagI TCATGA 1 cut(s) 577
PctI GAATGC 2 cut(s) 496, 818
PdiI GCCGGC 1 cut(s) 64
PfeI GAWTC 4 cut(s) 203, 924, 931, 1215
PkrI GCNGC 1 cut(s) 1171
PleI GAGTC 2 cut(s) 768, 1165
PpsI GAGTC 2 cut(s) 768, 1165
Psp6I CCWGG 2 cut(s) 718, 973
PspGI CCWGG 2 cut(s) 718, 973
PspN4I GGNNCC 3 cut(s) 46, 260, 341
PspPI GGNCC 2 cut(s) 164, 340
PsuI RGATCY 1 cut(s) 242
RsaI GTAC 5 cut(s) 5, 260, 461, 1105, 1292
RsaNI GTAC 5 cut(s) 4, 259, 460, 1104, 1291
RseI CAYNNNNRTG 1 cut(s) 869
SaqAI TTAA 7 cut(s) 681, 699, 948, 1044, 1124, 1179, 1333
SatI GCNGC 1 cut(s) 1170
Sau3AI GATC 5 cut(s) 121, 242, 268, 370, 554
Sau96I GGNCC 2 cut(s) 164, 340
SchI GAGTC 2 cut(s) 768, 1166
ScrFI CCNGG 3 cut(s) 720, 975, 1195
SduI GDGCHC 3 cut(s) 87, 829, 1331
SfaNI GCATC 5 cut(s) 127, 310, 391, 521, 1118
SfcI CTRYAG 3 cut(s) 171, 561, 769
SfuI TTCGAA 1 cut(s) 453
SinI GGWCC 2 cut(s) 164, 340
SmiMI CAYNNNNRTG 1 cut(s) 869
SmlI CTYRAG 3 cut(s) 246, 1136, 1164
SmoI CTYRAG 3 cut(s) 246, 1136, 1164
Sse9I AATT 9 cut(s) 117, 187, 230, 678, 792, 903, 969, 1073, 1198
SsiI CCGC 1 cut(s) 1233
SspMI CTAG 2 cut(s) 798, 1173
StyD4I CCNGG 3 cut(s) 718, 973, 1193
StyI CCWWGG 4 cut(s) 87, 216, 957, 1281
TaaI ACNGT 4 cut(s) 263, 565, 1009, 1122
TaiI ACGT 1 cut(s) 744
TaqI TCGA 4 cut(s) 36, 453, 520, 1035
TasI AATT 9 cut(s) 117, 187, 230, 678, 792, 903, 969, 1073, 1198
TatI WGTACW 1 cut(s) 459
TfiI GAWTC 4 cut(s) 203, 924, 931, 1215
Tru1I TTAA 7 cut(s) 681, 699, 948, 1044, 1124, 1179, 1333
Tru9I TTAA 7 cut(s) 681, 699, 948, 1044, 1124, 1179, 1333
TscAI CASTG 2 cut(s) 1012, 1225
TseFI GTSAC 1 cut(s) 800
TseI GCWGC 1 cut(s) 1169
Tsp45I GTSAC 1 cut(s) 800
TspDTI ATGAA 3 cut(s) 566, 861, 1248
TspGWI ACGGA 2 cut(s) 21, 94
TspRI CASTG 2 cut(s) 1012, 1225
VpaK11BI GGWCC 2 cut(s) 164, 340
XapI RAATTY 1 cut(s) 1198
XceI RCATGY 1 cut(s) 1150
XmiI GTMKAC 2 cut(s) 738, 1087
XspI CTAG 2 cut(s) 798, 1173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.