MD03G1252000.v1.1

Belongs to the actin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
33953205 .. 33962148
8944 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1252000.v1.1.491

Sequence Viewer

Length: 1335 bp
ATGTACGGAGGCGATGAGGTATCAGCTATCGTGCTCGACCTCGGCTCGCACACTTGCAAAGCCGGCTATGCCGGTGAAGATGCGCCGAAAGCTGTCTTCCCTTCGGTTGTCGGGTCAATTGATCAGATGGAAGTTGATGCAACTGAAATGGAAAACAATTCTGGATCTGCTGTAGATCCAAAGAATAATTCAAAATCTCTTGATTTTGACAAAGCCAAGGGAAAACGCAAGTTATATGTAGGATCTCAATCCTTGGGGTACCGTCGGGATCATATGGAGGTGCTGTCACCCATAAAGGATGGAGTTGTTGTTGACTGGGATGCTGTGGAGGGTATATGGGACCATGCTTTTAGGGAATGCCTATTGGTTGATCCTAAAGAGCATCCAATGCTACTTGCAGAGCCATCTTCGAACACTCAACAACAAAGAGAAAGGACAACAGAGCTTATGTTTGAAAAGTACAAAGTTCCTGCCTTATTTTTGGCCAAGAATGCTGTTCTCACATCATTTGCATCAGGCCGTGCTACCTCATTAGTAGTTGATGGTGGTGGAGGATCAACTACAGTTGCTCCAGTTCATGATGGCTTTGTTCTTCAAAAGGCTGTGTTATCTTCTCCTATTGGAGGAGAATTTCTTACTGATTGTTTGACAAAAAGTTTGGAAAGTAAAGGAATGACGATTAAACCCAGATATTCTTTCAAGAGAAAAGAAACGCGACCTGGAGAGTTTCAGGTAGTAGATGTTGATTTTCCAAATACCACAGAAAGCTACAGACTCTATTCCCAGAGGATAATTGCTAGTGACATTAAAGAATGTGTGTGTAGATCCCCAGACACTCCATATGATGAAATCGCGTATTCAAACATTCCAATGACCTCATATGAGCTTCCTGATGGCCAGACAATTGAAATCGGTGCTGATAGATTCAAGATTCCTGACATTCTATTTAACCCATCATTGGCTCAGACAATTCCTGGTATGGAGCATTTTGCAGAGATTGCTCCCGCTGTTCGTGGTCTTCCACAAATGGTTATCGAGAGCATTAACAAGTGTGATGTGGACATCCGTCGTGAATTATTTAGTAGCATACTGCTTGCCGGTGGCACAGCATCAATGCAACAGCTAAAGGAACGCCTTGAGAAAGATATGCTGGAGGAGTCTCCTCAAGCTGCTAGAGTCAAAGTATTGGTGGCTGGCAATTCAACAGAAAGGCGATTCAGTGTTTGGATAGGCGGAAGTATATTGGCGTCTCTTGGTTCATTCCAGCAAATGTGGTTCTCCAAGGCTGAGTACGAGGAGCATGGAGCTTCTTACATACAACGAAAGTGCCCTTGA

Protein Analysis

445

Amino Acids

48.95

Weight (kDa)

5.2

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Actin PF00022 4 - 443 4.3e-159 Actin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18450
fragaria_vesca FvH4_3g17390 FvH4_6g50670
malus_domestica MD03G1252000.v1.1 MD11G1273400.v1.1
prunus_persica Prupe.4G154200_v2.0.a1
pyrus_communis pycom03g19950
rosa_chinensis RchiOBHm_Chr5g0028921
rosa_laevigata RLG00000033127
rosa_multiflora Rmu_sc0005178.1_g000021
rosa_roxburghii Rroxscaffold_1G00050990
rosa_rugosa Rorug05G0111500
rosa_samantha Rh5AG203800 Rh5BG202100 Rh5CG222800 Rh5DG205400
rosa_wichuraiana Rw5G018450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 258
AccII CGCG 2 cut(s) 715, 854
AciI CCGC 2 cut(s) 1005, 1233
AclWI GGATC 7 cut(s) 170, 172, 250, 276, 365, 562, 819
AcoI YGGCCR 2 cut(s) 483, 895
AcsI RAATTY 1 cut(s) 629
AcyI GRCGYC 1 cut(s) 1247
AfaI GTAC 4 cut(s) 5, 260, 461, 1292
AfiI CCNNNNNNNGG 2 cut(s) 623, 958
AgsI TTSAA 8 cut(s) 192, 455, 596, 700, 861, 908, 928, 1203
AjnI CCWGG 2 cut(s) 718, 973
AjuI GAANNNNNNNTTGG 2 cut(s) 172, 204
AluBI AGCT 8 cut(s) 26, 92, 445, 768, 886, 1123, 1169, 1307
AluI AGCT 8 cut(s) 26, 92, 445, 768, 886, 1123, 1169, 1307
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 2 cut(s) 1164, 1254
AlwI GGATC 7 cut(s) 170, 172, 250, 276, 365, 562, 819
AoxI GGCC 3 cut(s) 483, 517, 895
ApeKI GCWGC 1 cut(s) 1169
ApoI RAATTY 1 cut(s) 629
ArsI GACNNNNNNTTYG 2 cut(s) 640, 672
Asp718I GGTACC 1 cut(s) 258
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 340
AsuHPI GGTGA 2 cut(s) 86, 279
AsuII TTCGAA 1 cut(s) 410
AvaII GGWCC 1 cut(s) 340
BaeGI GKGCMC 1 cut(s) 1331
BalI TGGCCA 2 cut(s) 485, 897
BanI GGYRCC 1 cut(s) 258
BbsI GAAGAC 2 cut(s) 88, 1010
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 1156
BccI CCATC 7 cut(s) 121, 293, 412, 536, 575, 887, 961
BceAI ACGGC 1 cut(s) 504
BciT130I CCWGG 2 cut(s) 720, 975
BclI TGATCA 1 cut(s) 121
BcoDI GTCTC 2 cut(s) 1164, 1254
BfaI CTAG 2 cut(s) 798, 1173
BfmI CTRYAG 3 cut(s) 171, 561, 769
BisI GCNGC 1 cut(s) 1170
BlsI GCNGC 1 cut(s) 1171
Bme1390I CCNGG 2 cut(s) 720, 975
Bme18I GGWCC 1 cut(s) 340
BmgT120I GGNCC 1 cut(s) 340
BmiI GGNNCC 2 cut(s) 260, 341
BmrFI CCNGG 2 cut(s) 720, 975
BmrI ACTGGG 1 cut(s) 325
BmsI GCATC 6 cut(s) 70, 127, 310, 391, 521, 1118
BmuI ACTGGG 1 cut(s) 325
BoxI GACNNNNGTC 1 cut(s) 1065
BpiI GAAGAC 2 cut(s) 88, 1010
BpmI CTGGAG 3 cut(s) 555, 741, 1172
Bpu14I TTCGAA 1 cut(s) 410
BpuEI CTTGAG 2 cut(s) 1149, 1157
BsaBI GATNNNNATC 1 cut(s) 247
BsaHI GRCGYC 1 cut(s) 1247
BsaJI CCNNGG 4 cut(s) 40, 216, 252, 1281
BsaXI ACNNNNNCTCC 6 cut(s) 269, 294, 299, 324, 553, 583
Bsc4I CCNNNNNNNGG 2 cut(s) 623, 958
Bse118I RCCGGY 3 cut(s) 62, 71, 1097
Bse1I ACTGG 2 cut(s) 320, 572
Bse8I GATNNNNATC 1 cut(s) 247
BseBI CCWGG 2 cut(s) 720, 975
BseDI CCNNGG 4 cut(s) 40, 216, 252, 1281
BseGI GGATG 4 cut(s) 304, 325, 382, 1062
BseJI GATNNNNATC 1 cut(s) 247
BseLI CCNNNNNNNGG 2 cut(s) 623, 958
BseMII CTCAG 2 cut(s) 977, 1278
BseNI ACTGG 2 cut(s) 320, 572
BseRI GAGGAG 4 cut(s) 639, 1152, 1169, 1310
BseSI GKGCMC 1 cut(s) 1331
BseXI GCAGC 1 cut(s) 1156
Bsh1236I CGCG 2 cut(s) 715, 854
BshFI GGCC 3 cut(s) 485, 519, 897
BshNI GGYRCC 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 3 cut(s) 63, 72, 1098
BslFI GGGAC 1 cut(s) 353
BslI CCNNNNNNNGG 2 cut(s) 623, 958
BsmAI GTCTC 2 cut(s) 1164, 1254
BsmBI CGTCTC 1 cut(s) 1254
BsmFI GGGAC 1 cut(s) 353
BsmI GAATGC 2 cut(s) 362, 496
BsnI GGCC 3 cut(s) 485, 519, 897
Bsp119I TTCGAA 1 cut(s) 410
Bsp1286I GDGCHC 2 cut(s) 36, 1331
Bsp143I GATC 8 cut(s) 121, 164, 175, 242, 268, 370, 554, 824
BspACI CCGC 2 cut(s) 1005, 1233
BspANI GGCC 3 cut(s) 485, 519, 897
BspCNI CTCAG 2 cut(s) 976, 1279
BspFNI CGCG 2 cut(s) 715, 854
BspHI TCATGA 1 cut(s) 577
BspLI GGNNCC 2 cut(s) 260, 341
BspPI GGATC 7 cut(s) 170, 172, 250, 276, 365, 562, 819
BspT104I TTCGAA 1 cut(s) 410
BspT107I GGYRCC 1 cut(s) 258
BsrFI RCCGGY 3 cut(s) 62, 71, 1097
BsrI ACTGG 2 cut(s) 320, 572
BssAI RCCGGY 3 cut(s) 62, 71, 1097
BssECI CCNNGG 4 cut(s) 40, 216, 252, 1281
BssMI GATC 8 cut(s) 121, 164, 175, 242, 268, 370, 554, 824
BssNI GRCGYC 1 cut(s) 1247
BssT1I CCWWGG 3 cut(s) 216, 252, 1281
Bst2UI CCWGG 2 cut(s) 720, 975
Bst4CI ACNGT 2 cut(s) 263, 565
BstACI GRCGYC 1 cut(s) 1247
BstAPI GCANNNNNTGC 2 cut(s) 388, 998
BstBI TTCGAA 1 cut(s) 410
BstC8I GCNNGC 4 cut(s) 47, 64, 1095, 1195
BstDEI CTNAG 2 cut(s) 963, 1287
BstENI CCTNNNNNAGG 1 cut(s) 621
BstF5I GGATG 4 cut(s) 304, 325, 382, 1062
BstFNI CGCG 2 cut(s) 715, 854
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 8 cut(s) 124, 167, 178, 245, 271, 373, 557, 827
BstMAI GTCTC 2 cut(s) 1164, 1254
BstMBI GATC 8 cut(s) 121, 164, 175, 242, 268, 370, 554, 824
BstMWI GCNNNNNNNGC 6 cut(s) 63, 68, 89, 388, 491, 998
BstNI CCWGG 2 cut(s) 720, 975
BstPAI GACNNNNGTC 1 cut(s) 1065
BstSCI CCNGG 2 cut(s) 718, 973
BstSFI CTRYAG 3 cut(s) 171, 561, 769
BstSLI GKGCMC 1 cut(s) 1331
BstUI CGCG 2 cut(s) 715, 854
BstV1I GCAGC 1 cut(s) 1156
BstV2I GAAGAC 2 cut(s) 88, 1010
BstX2I RGATCY 4 cut(s) 164, 175, 242, 824
BstYI RGATCY 4 cut(s) 164, 175, 242, 824
BsuRI GGCC 3 cut(s) 485, 519, 897
BtgZI GCGATG 1 cut(s) 27
BtsCI GGATG 4 cut(s) 304, 325, 382, 1062
BtsIMutI CAGTG 1 cut(s) 1225
Cac8I GCNNGC 4 cut(s) 47, 64, 1095, 1195
CciI TCATGA 1 cut(s) 577
CfoI GCGC 1 cut(s) 85
Cfr10I RCCGGY 3 cut(s) 62, 71, 1097
Cfr13I GGNCC 1 cut(s) 340
CseI GACGC 1 cut(s) 1236
Csp6I GTAC 4 cut(s) 4, 259, 460, 1291
CviAII CATG 3 cut(s) 344, 578, 1301
CviQI GTAC 4 cut(s) 4, 259, 460, 1291
DdeI CTNAG 2 cut(s) 963, 1287
DpnI GATC 8 cut(s) 123, 166, 177, 244, 270, 372, 556, 826
DpnII GATC 8 cut(s) 121, 164, 175, 242, 268, 370, 554, 824
EaeI YGGCCR 2 cut(s) 483, 895
EciI GGCGGA 1 cut(s) 1248
Eco130I CCWWGG 3 cut(s) 216, 252, 1281
Eco47I GGWCC 1 cut(s) 340
EcoNI CCTNNNNNAGG 1 cut(s) 621
EcoRII CCWGG 2 cut(s) 718, 973
EcoT14I CCWWGG 3 cut(s) 216, 252, 1281
ErhI CCWWGG 3 cut(s) 216, 252, 1281
Esp3I CGTCTC 1 cut(s) 1254
FaeI CATG 3 cut(s) 347, 581, 1304
FaqI GGGAC 1 cut(s) 353
FatI CATG 3 cut(s) 343, 577, 1300
FauI CCCGC 1 cut(s) 1012
FauNDI CATATG 3 cut(s) 273, 841, 880
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 1170
FokI GGATG 4 cut(s) 311, 332, 369, 1049
Fsp4HI GCNGC 1 cut(s) 1170
FspBI CTAG 2 cut(s) 798, 1173
GlaI GCGC 1 cut(s) 84
GluI GCNGC 1 cut(s) 1170
GsuI CTGGAG 3 cut(s) 555, 741, 1172
HaeIII GGCC 3 cut(s) 485, 519, 897
HapII CCGG 3 cut(s) 63, 72, 1098
HgaI GACGC 1 cut(s) 1236
HhaI GCGC 1 cut(s) 85
Hin1I GRCGYC 1 cut(s) 1247
Hin1II CATG 3 cut(s) 347, 581, 1304
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 6 cut(s) 774, 924, 931, 1157, 1176, 1215
HpaII CCGG 3 cut(s) 63, 72, 1098
HphI GGTGA 2 cut(s) 86, 279
Hpy166II GTNNAC 2 cut(s) 313, 1060
Hpy188I TCNGA 2 cut(s) 126, 966
Hpy8I GTNNAC 2 cut(s) 313, 1060
Hpy99I CGWCG 2 cut(s) 267, 1071
HpyAV CCTTC 1 cut(s) 111
HpyCH4III ACNGT 2 cut(s) 263, 565
HpyCH4V TGCA 6 cut(s) 57, 140, 398, 512, 992, 1117
HpyF10VI GCNNNNNNNGC 6 cut(s) 63, 68, 89, 388, 491, 998
HpyF3I CTNAG 2 cut(s) 963, 1287
Hsp92I GRCGYC 1 cut(s) 1247
Hsp92II CATG 3 cut(s) 347, 581, 1304
HspAI GCGC 1 cut(s) 83
KpnI GGTACC 1 cut(s) 262
KroI GCCGGC 1 cut(s) 62
KroNI GCCGGC 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 8 cut(s) 121, 164, 175, 242, 268, 370, 554, 824
LmnI GCTCC 5 cut(s) 574, 982, 1006, 1297, 1304
Lsp1109I GCAGC 1 cut(s) 1156
LweI GCATC 6 cut(s) 70, 127, 310, 391, 521, 1118
MaeI CTAG 2 cut(s) 798, 1173
MaeIII GTNAC 2 cut(s) 285, 800
MalI GATC 8 cut(s) 123, 166, 177, 244, 270, 372, 556, 826
MboI GATC 8 cut(s) 121, 164, 175, 242, 268, 370, 554, 824
MboII GAAGA 6 cut(s) 88, 89, 399, 584, 603, 1010
MfeI CAATTG 2 cut(s) 117, 903
MflI RGATCY 4 cut(s) 164, 175, 242, 824
MhlI GDGCHC 2 cut(s) 36, 1331
MlsI TGGCCA 2 cut(s) 485, 897
MluCI AATT 9 cut(s) 117, 157, 187, 629, 792, 903, 969, 1073, 1198
MluNI TGGCCA 2 cut(s) 485, 897
MlyI GAGTC 3 cut(s) 768, 1166, 1185
Mox20I TGGCCA 2 cut(s) 485, 897
MroNI GCCGGC 1 cut(s) 62
MscI TGGCCA 2 cut(s) 485, 897
MseI TTAA 4 cut(s) 681, 807, 948, 1044
MslI CAYNNNNRTG 1 cut(s) 869
Msp20I TGGCCA 2 cut(s) 485, 897
MspA1I CMGCKG 1 cut(s) 1007
MspI CCGG 3 cut(s) 63, 72, 1098
MspR9I CCNGG 2 cut(s) 720, 975
MunI CAATTG 2 cut(s) 117, 903
Mva1269I GAATGC 2 cut(s) 362, 496
MvaI CCWGG 2 cut(s) 720, 975
MvnI CGCG 2 cut(s) 715, 854
MwoI GCNNNNNNNGC 6 cut(s) 63, 68, 89, 388, 491, 998
NaeI GCCGGC 1 cut(s) 64
NdeI CATATG 3 cut(s) 273, 841, 880
NdeII GATC 8 cut(s) 121, 164, 175, 242, 268, 370, 554, 824
NgoMIV GCCGGC 1 cut(s) 62
NlaIII CATG 3 cut(s) 347, 581, 1304
NlaIV GGNNCC 2 cut(s) 260, 341
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 2 cut(s) 285, 800
NspV TTCGAA 1 cut(s) 410
PagI TCATGA 1 cut(s) 577
PctI GAATGC 2 cut(s) 362, 496
PdiI GCCGGC 1 cut(s) 64
PfeI GAWTC 3 cut(s) 924, 931, 1215
PkrI GCNGC 1 cut(s) 1171
PleI GAGTC 3 cut(s) 768, 1165, 1184
PpsI GAGTC 3 cut(s) 768, 1165, 1184
PshAI GACNNNNGTC 1 cut(s) 1065
Psp6I CCWGG 2 cut(s) 718, 973
PspGI CCWGG 2 cut(s) 718, 973
PspN4I GGNNCC 2 cut(s) 260, 341
PspPI GGNCC 1 cut(s) 340
PsuI RGATCY 4 cut(s) 164, 175, 242, 824
RsaI GTAC 4 cut(s) 5, 260, 461, 1292
RsaNI GTAC 4 cut(s) 4, 259, 460, 1291
RseI CAYNNNNRTG 1 cut(s) 869
SaqAI TTAA 4 cut(s) 681, 807, 948, 1044
SatI GCNGC 1 cut(s) 1170
Sau3AI GATC 8 cut(s) 121, 164, 175, 242, 268, 370, 554, 824
Sau96I GGNCC 1 cut(s) 340
SchI GAGTC 3 cut(s) 768, 1166, 1185
ScrFI CCNGG 2 cut(s) 720, 975
SduI GDGCHC 2 cut(s) 36, 1331
SfaNI GCATC 6 cut(s) 70, 127, 310, 391, 521, 1118
SfcI CTRYAG 3 cut(s) 171, 561, 769
SfuI TTCGAA 1 cut(s) 410
SinI GGWCC 1 cut(s) 340
SmiMI CAYNNNNRTG 1 cut(s) 869
SmlI CTYRAG 2 cut(s) 1136, 1164
SmoI CTYRAG 2 cut(s) 1136, 1164
Sse9I AATT 9 cut(s) 117, 157, 187, 629, 792, 903, 969, 1073, 1198
SsiI CCGC 2 cut(s) 1005, 1233
SspMI CTAG 2 cut(s) 798, 1173
StyD4I CCNGG 2 cut(s) 718, 973
StyI CCWWGG 3 cut(s) 216, 252, 1281
TaaI ACNGT 2 cut(s) 263, 565
TaqI TCGA 3 cut(s) 36, 410, 1035
TasI AATT 9 cut(s) 117, 157, 187, 629, 792, 903, 969, 1073, 1198
TatI WGTACW 1 cut(s) 459
TfiI GAWTC 3 cut(s) 924, 931, 1215
Tru1I TTAA 4 cut(s) 681, 807, 948, 1044
Tru9I TTAA 4 cut(s) 681, 807, 948, 1044
TscAI CASTG 1 cut(s) 1225
TseFI GTSAC 2 cut(s) 285, 800
TseI GCWGC 1 cut(s) 1169
Tsp45I GTSAC 2 cut(s) 285, 800
TspDTI ATGAA 3 cut(s) 566, 861, 1248
TspGWI ACGGA 2 cut(s) 21, 1055
TspRI CASTG 1 cut(s) 1225
VpaK11BI GGWCC 1 cut(s) 340
XagI CCTNNNNNAGG 1 cut(s) 621
XapI RAATTY 1 cut(s) 629
XspI CTAG 2 cut(s) 798, 1173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.