FvH4_6g50670

Belongs to the actin family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
37671532 .. 37679404
7873 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50670.t1

Sequence Viewer

Length: 1302 bp
ATGTACGCCCGCGATGCGGAATCGGCCGTCGTAATCGACCTTGGCTCCCACACTTGCAAGGTGGGCTTCGCCTGCGATAATGCGCCCAAGGTTTTCCCATCGGTTGTTGGGTCAATTGATCAAATGAAAGTTGATGAGACTGAAAACTCTGGATCTGCTGATCCAAAAAGTGATTCTGACAGAACCAAGGGAAAGTGGAAATTATATGTAGGATCTGAGGCTTTAGGAAATCGTTGTGATCATATGGAGGTGCTGCCATCTATAAAGAATGGAGTTATTGTTGACTGGGATGCTGTGGAGGGTATATGGGACCATGCTTTCAGTGACTGCCTATTGGTTGATCCCAAAGAGCGTCCAGTGCTACTTGCAGAGCCATCTTTCAACTCCCAGCAACAGAGAGAAAGGACGGTAGAACTCATGTTTGAAAAATATAAAGTTCCTGTTTTGTTCATGGCTAAGAATGCTGTTCTCACATCTTTTGCATCTGGCCGTGTTACCTCGTTGGTAGTTGACAGTGGCGGAGGATCAACTACAGTAGCTCCAGTTCATGATGGTTATGTTCTCCAAAAGGCTGTATCGTCCTATCCTATTGGAGGAGAATTTCTCACTGATTGTCTGATGAAAAGTTTGGAAAGTAAAGGAATGACAATCAAACCCAGATATTCTTTCAAGAAGAAGGAAACACGGCCTGGAGAGTTTCAGGTTGAAGACGTTGATTTTCCAAACACCACAGAGAGTTACAAGCTCTATTCCAAGAGGATAATTGCTAGTGGTATCAAGGAATATGTGTGCAGAGTGCCTGACACTCCATATGATGAAAGCTCTCATTCAAACATTCCAATGGTCCCTTATGAGCTTCCTGATGGCCAGATAATTGAAATTGGATCTGATAGATTCAAAATCCCTGATGTACTGTTTAGCCCATCCTTAGCTCAGACGATTCCTGGTGTGGAGAACTTTGCAGAGATTGCTCCGTCTTTTCCTGGTTTACCTCAAATGGTTATAGACAGCATTAACAAGTGTGATGTGGACTACCGTCGTGAATTATTCAGTAGTATACTGCTTTCTGGTGGCACATTATCAATGCAACAATTAAAGGAACGCCTTGAGAAAGACCTGAAGGAGTCTCCCCGAGCTGCTAGAGTTAAAGTGTTGGCAAGTGGAAATGCAACAGGAAGGCGATTCAGTGTTTGGATAGGTGGCAGTATATTGGCTTCTCTTGGTCAGTTCCGGTATATGTGGTTCACCAAGGCTGAGTACGAGGAGCATGGTGCTTCTTATGTACAGAGGAAGTGCCCTTGA

Protein Analysis

434

Amino Acids

47.98

Weight (kDa)

5.59

Isoelectric Point (pI)

34.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Actin PF00022 5 - 432 1.7e-146 Actin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18450
fragaria_vesca FvH4_3g17390 FvH4_6g50670
malus_domestica MD03G1252000.v1.1 MD11G1273400.v1.1
prunus_persica Prupe.4G154200_v2.0.a1
pyrus_communis pycom03g19950
rosa_chinensis RchiOBHm_Chr5g0028921
rosa_laevigata RLG00000033127
rosa_multiflora Rmu_sc0005178.1_g000021
rosa_roxburghii Rroxscaffold_1G00050990
rosa_rugosa Rorug05G0111500
rosa_samantha Rh5AG203800 Rh5BG202100 Rh5CG222800 Rh5DG205400
rosa_wichuraiana Rw5G018450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1057
AccII CGCG 1 cut(s) 12
AciI CCGC 3 cut(s) 10, 17, 519
AclWI GGATC 6 cut(s) 155, 160, 220, 335, 532, 892
AcoI YGGCCR 3 cut(s) 24, 487, 865
AcsI RAATTY 1 cut(s) 599
AcuI CTGAAG 1 cut(s) 1139
AfaI GTAC 4 cut(s) 5, 912, 1259, 1284
AfiI CCNNNNNNNGG 2 cut(s) 16, 593
AgsI TTSAA 7 cut(s) 382, 425, 670, 707, 831, 878, 898
AjnI CCWGG 3 cut(s) 688, 943, 982
AjuI GAANNNNNNNTTGG 2 cut(s) 157, 189
AluBI AGCT 6 cut(s) 539, 745, 822, 856, 932, 1136
AluI AGCT 6 cut(s) 539, 745, 822, 856, 932, 1136
Alw26I GTCTC 2 cut(s) 131, 1131
AlwI GGATC 6 cut(s) 155, 160, 220, 335, 532, 892
AlwNI CAGNNNCTG 1 cut(s) 327
Ama87I CYCGRG 1 cut(s) 1131
AoxI GGCC 4 cut(s) 24, 487, 686, 865
ApeKI GCWGC 2 cut(s) 253, 1136
ApoI RAATTY 1 cut(s) 599
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 2 cut(s) 310, 844
AsuHPI GGTGA 1 cut(s) 1237
AvaI CYCGRG 1 cut(s) 1131
AvaII GGWCC 2 cut(s) 310, 844
BaeGI GKGCMC 1 cut(s) 1298
BalI TGGCCA 1 cut(s) 867
BarI GAAGNNNNNNTAC 2 cut(s) 1198, 1230
BbsI GAAGAC 1 cut(s) 714
BbvI GCAGC 2 cut(s) 240, 1123
BccI CCATC 6 cut(s) 106, 265, 382, 545, 857, 931
BceAI ACGGC 3 cut(s) 11, 474, 701
BciT130I CCWGG 3 cut(s) 690, 945, 984
BclI TGATCA 2 cut(s) 118, 238
BcoDI GTCTC 2 cut(s) 131, 1131
BfaI CTAG 2 cut(s) 768, 1140
BfmI CTRYAG 1 cut(s) 531
BisI GCNGC 2 cut(s) 254, 1137
BlsI GCNGC 2 cut(s) 255, 1138
Bme1390I CCNGG 3 cut(s) 690, 945, 984
Bme18I GGWCC 2 cut(s) 310, 844
BmeT110I CYCGRG 1 cut(s) 1131
BmgT120I GGNCC 2 cut(s) 310, 844
BmiI GGNNCC 3 cut(s) 46, 311, 846
BmrFI CCNGG 3 cut(s) 690, 945, 984
BmrI ACTGGG 1 cut(s) 295
BmsI GCATC 3 cut(s) 4, 280, 491
BmuI ACTGGG 1 cut(s) 295
BoxI GACNNNNGTC 1 cut(s) 1035
BpiI GAAGAC 1 cut(s) 714
BplI GAGNNNNNCTC 2 cut(s) 588, 620
BpmI CTGGAG 2 cut(s) 525, 711
Bpu10I CCTNAGC 1 cut(s) 928
BpuEI CTTGAG 1 cut(s) 1127
BsaJI CCNNGG 4 cut(s) 40, 87, 186, 1248
BsaWI WCCGGW 1 cut(s) 1230
BsaXI ACNNNNNCTCC 6 cut(s) 29, 59, 264, 294, 523, 553
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 593
Bse1I ACTGG 3 cut(s) 290, 356, 542
BseBI CCWGG 3 cut(s) 690, 945, 984
BseDI CCNNGG 4 cut(s) 40, 87, 186, 1248
BseGI GGATG 2 cut(s) 295, 923
BseLI CCNNNNNNNGG 2 cut(s) 16, 593
BseMII CTCAG 3 cut(s) 207, 947, 1245
BseNI ACTGG 3 cut(s) 290, 356, 542
BseRI GAGGAG 2 cut(s) 609, 1277
BseSI GKGCMC 1 cut(s) 1298
BseX3I CGGCCG 1 cut(s) 24
BseXI GCAGC 2 cut(s) 240, 1123
BseYI CCCAGC 1 cut(s) 387
BsgI GTGCAG 1 cut(s) 811
Bsh1236I CGCG 1 cut(s) 12
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 4 cut(s) 26, 489, 688, 867
BsiEI CGRYCG 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 1131
BsiSI CCGG 1 cut(s) 1231
BslFI GGGAC 2 cut(s) 323, 830
BslI CCNNNNNNNGG 2 cut(s) 16, 593
BsmAI GTCTC 2 cut(s) 131, 1131
BsmFI GGGAC 2 cut(s) 323, 830
BsmI GAATGC 1 cut(s) 466
BsnI GGCC 4 cut(s) 26, 489, 688, 867
BsoBI CYCGRG 1 cut(s) 1131
Bsp1286I GDGCHC 1 cut(s) 1298
Bsp1407I TGTACA 1 cut(s) 1282
Bsp143I GATC 8 cut(s) 118, 152, 160, 212, 238, 340, 524, 884
BspACI CCGC 3 cut(s) 10, 17, 519
BspANI GGCC 4 cut(s) 26, 489, 688, 867
BspCNI CTCAG 3 cut(s) 208, 946, 1246
BspFNI CGCG 1 cut(s) 12
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 3 cut(s) 46, 311, 846
BspPI GGATC 6 cut(s) 155, 160, 220, 335, 532, 892
BsrGI TGTACA 1 cut(s) 1282
BsrI ACTGG 3 cut(s) 290, 356, 542
BssECI CCNNGG 4 cut(s) 40, 87, 186, 1248
BssMI GATC 8 cut(s) 118, 152, 160, 212, 238, 340, 524, 884
BssNAI GTATAC 1 cut(s) 1058
BssT1I CCWWGG 4 cut(s) 40, 87, 186, 1248
Bst1107I GTATAC 1 cut(s) 1058
Bst2UI CCWGG 3 cut(s) 690, 945, 984
Bst4CI ACNGT 5 cut(s) 409, 515, 535, 915, 1037
BstAPI GCANNNNNTGC 1 cut(s) 968
BstAUI TGTACA 1 cut(s) 1282
BstC8I GCNNGC 2 cut(s) 10, 73
BstDEI CTNAG 5 cut(s) 216, 456, 928, 933, 1254
BstENI CCTNNNNNAGG 1 cut(s) 591
BstF5I GGATG 2 cut(s) 295, 923
BstFNI CGCG 1 cut(s) 12
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 8 cut(s) 121, 155, 163, 215, 241, 343, 527, 887
BstMAI GTCTC 2 cut(s) 131, 1131
BstMBI GATC 8 cut(s) 118, 152, 160, 212, 238, 340, 524, 884
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 7 cut(s) 14, 23, 63, 72, 358, 461, 968
BstNI CCWGG 3 cut(s) 690, 945, 984
BstPAI GACNNNNGTC 1 cut(s) 1035
BstSCI CCNGG 3 cut(s) 688, 943, 982
BstSFI CTRYAG 1 cut(s) 531
BstSLI GKGCMC 1 cut(s) 1298
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 2 cut(s) 240, 1123
BstV2I GAAGAC 1 cut(s) 714
BstX2I RGATCY 3 cut(s) 152, 212, 884
BstYI RGATCY 3 cut(s) 152, 212, 884
BstZ17I GTATAC 1 cut(s) 1058
BstZI CGGCCG 1 cut(s) 24
BsuRI GGCC 4 cut(s) 26, 489, 688, 867
BtgZI GCGATG 1 cut(s) 27
BtsCI GGATG 2 cut(s) 295, 923
BtsIMutI CAGTG 5 cut(s) 328, 363, 520, 606, 1192
Cac8I GCNNGC 2 cut(s) 10, 73
CaiI CAGNNNCTG 1 cut(s) 327
CciI TCATGA 1 cut(s) 547
CfoI GCGC 1 cut(s) 85
Cfr13I GGNCC 2 cut(s) 310, 844
CseI GACGC 1 cut(s) 341
Csp6I GTAC 4 cut(s) 4, 911, 1258, 1283
CviAII CATG 5 cut(s) 314, 418, 451, 548, 1268
CviQI GTAC 4 cut(s) 4, 911, 1258, 1283
DdeI CTNAG 5 cut(s) 216, 456, 928, 933, 1254
DpnI GATC 8 cut(s) 120, 154, 162, 214, 240, 342, 526, 886
DpnII GATC 8 cut(s) 118, 152, 160, 212, 238, 340, 524, 884
EaeI YGGCCR 3 cut(s) 24, 487, 865
EagI CGGCCG 1 cut(s) 24
EciI GGCGGA 1 cut(s) 534
EclXI CGGCCG 1 cut(s) 24
Eco130I CCWWGG 4 cut(s) 40, 87, 186, 1248
Eco47I GGWCC 2 cut(s) 310, 844
Eco52I CGGCCG 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 1139
Eco88I CYCGRG 1 cut(s) 1131
EcoNI CCTNNNNNAGG 1 cut(s) 591
EcoRII CCWGG 3 cut(s) 688, 943, 982
EcoT14I CCWWGG 4 cut(s) 40, 87, 186, 1248
ErhI CCWWGG 4 cut(s) 40, 87, 186, 1248
FaeI CATG 5 cut(s) 317, 421, 454, 551, 1271
FalI AAGNNNNNCTT 2 cut(s) 50, 82
FaqI GGGAC 2 cut(s) 323, 830
FatI CATG 5 cut(s) 313, 417, 450, 547, 1267
FauI CCCGC 1 cut(s) 17
FauNDI CATATG 2 cut(s) 243, 811
FbaI TGATCA 2 cut(s) 118, 238
FblI GTMKAC 1 cut(s) 1057
Fnu4HI GCNGC 2 cut(s) 254, 1137
FokI GGATG 2 cut(s) 302, 910
Fsp4HI GCNGC 2 cut(s) 254, 1137
FspBI CTAG 2 cut(s) 768, 1140
GlaI GCGC 1 cut(s) 84
GluI GCNGC 2 cut(s) 254, 1137
GsaI CCCAGC 1 cut(s) 391
GsuI CTGGAG 2 cut(s) 525, 711
HaeIII GGCC 4 cut(s) 26, 489, 688, 867
HapII CCGG 1 cut(s) 1231
HgaI GACGC 1 cut(s) 341
HhaI GCGC 1 cut(s) 85
Hin1II CATG 5 cut(s) 317, 421, 454, 551, 1271
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HincII GTYRAC 2 cut(s) 283, 511
HindII GTYRAC 2 cut(s) 283, 511
HinfI GANTC 6 cut(s) 20, 173, 894, 940, 1124, 1182
HpaII CCGG 1 cut(s) 1231
HphI GGTGA 1 cut(s) 1237
Hpy166II GTNNAC 6 cut(s) 283, 511, 989, 1030, 1058, 1245
Hpy188I TCNGA 5 cut(s) 178, 217, 618, 889, 936
Hpy188III TCNNGA 5 cut(s) 150, 548, 670, 860, 1040
Hpy8I GTNNAC 6 cut(s) 283, 511, 989, 1030, 1058, 1245
Hpy99I CGWCG 2 cut(s) 32, 1041
HpyAV CCTTC 3 cut(s) 670, 1114, 1170
HpyCH4III ACNGT 5 cut(s) 409, 515, 535, 915, 1037
HpyCH4IV ACGT 1 cut(s) 711
HpyCH4V TGCA 7 cut(s) 57, 368, 482, 792, 962, 1087, 1169
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 23, 63, 72, 358, 461, 968
HpyF3I CTNAG 5 cut(s) 216, 456, 928, 933, 1254
HpySE526I ACGT 1 cut(s) 711
Hsp92II CATG 5 cut(s) 317, 421, 454, 551, 1271
HspAI GCGC 1 cut(s) 83
Ksp22I TGATCA 2 cut(s) 118, 238
Kzo9I GATC 8 cut(s) 118, 152, 160, 212, 238, 340, 524, 884
LmnI GCTCC 4 cut(s) 50, 544, 976, 1264
Lsp1109I GCAGC 2 cut(s) 240, 1123
LweI GCATC 3 cut(s) 4, 280, 491
MaeI CTAG 2 cut(s) 768, 1140
MaeII ACGT 1 cut(s) 711
MaeIII GTNAC 3 cut(s) 323, 493, 737
MalI GATC 8 cut(s) 120, 154, 162, 214, 240, 342, 526, 886
MboI GATC 8 cut(s) 118, 152, 160, 212, 238, 340, 524, 884
MboII GAAGA 2 cut(s) 685, 719
MfeI CAATTG 1 cut(s) 114
MflI RGATCY 3 cut(s) 152, 212, 884
MhlI GDGCHC 1 cut(s) 1298
MlsI TGGCCA 1 cut(s) 867
MluCI AATT 8 cut(s) 114, 200, 599, 762, 873, 879, 1043, 1091
MluNI TGGCCA 1 cut(s) 867
MlyI GAGTC 1 cut(s) 1133
Mox20I TGGCCA 1 cut(s) 867
MscI TGGCCA 1 cut(s) 867
MseI TTAA 3 cut(s) 1014, 1094, 1146
MslI CAYNNNNRTG 1 cut(s) 839
Msp20I TGGCCA 1 cut(s) 867
MspI CCGG 1 cut(s) 1231
MspR9I CCNGG 3 cut(s) 690, 945, 984
MunI CAATTG 1 cut(s) 114
Mva1269I GAATGC 1 cut(s) 466
MvaI CCWGG 3 cut(s) 690, 945, 984
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 7 cut(s) 14, 23, 63, 72, 358, 461, 968
NdeI CATATG 2 cut(s) 243, 811
NdeII GATC 8 cut(s) 118, 152, 160, 212, 238, 340, 524, 884
NlaIII CATG 5 cut(s) 317, 421, 454, 551, 1271
NlaIV GGNNCC 3 cut(s) 46, 311, 846
NmuCI GTSAC 1 cut(s) 323
PagI TCATGA 1 cut(s) 547
PctI GAATGC 1 cut(s) 466
PfeI GAWTC 5 cut(s) 20, 173, 894, 940, 1182
PkrI GCNGC 2 cut(s) 255, 1138
PleI GAGTC 1 cut(s) 1132
PpsI GAGTC 1 cut(s) 1132
PshAI GACNNNNGTC 1 cut(s) 1035
Psp6I CCWGG 3 cut(s) 688, 943, 982
PspFI CCCAGC 1 cut(s) 387
PspGI CCWGG 3 cut(s) 688, 943, 982
PspN4I GGNNCC 3 cut(s) 46, 311, 846
PspPI GGNCC 2 cut(s) 310, 844
PsrI GAACNNNNNNTAC 4 cut(s) 528, 560, 1226, 1258
PstNI CAGNNNCTG 1 cut(s) 327
PsuI RGATCY 3 cut(s) 152, 212, 884
RsaI GTAC 4 cut(s) 5, 912, 1259, 1284
RsaNI GTAC 4 cut(s) 4, 911, 1258, 1283
RseI CAYNNNNRTG 1 cut(s) 839
SaqAI TTAA 3 cut(s) 1014, 1094, 1146
SatI GCNGC 2 cut(s) 254, 1137
Sau3AI GATC 8 cut(s) 118, 152, 160, 212, 238, 340, 524, 884
Sau96I GGNCC 2 cut(s) 310, 844
SchI GAGTC 1 cut(s) 1133
ScrFI CCNGG 3 cut(s) 690, 945, 984
SduI GDGCHC 1 cut(s) 1298
SfaNI GCATC 3 cut(s) 4, 280, 491
SfcI CTRYAG 1 cut(s) 531
SinI GGWCC 2 cut(s) 310, 844
SmiMI CAYNNNNRTG 1 cut(s) 839
SmlI CTYRAG 1 cut(s) 1106
SmoI CTYRAG 1 cut(s) 1106
Sse9I AATT 8 cut(s) 114, 200, 599, 762, 873, 879, 1043, 1091
SsiI CCGC 3 cut(s) 10, 17, 519
SspMI CTAG 2 cut(s) 768, 1140
StyD4I CCNGG 3 cut(s) 688, 943, 982
StyI CCWWGG 4 cut(s) 40, 87, 186, 1248
TaaI ACNGT 5 cut(s) 409, 515, 535, 915, 1037
TaiI ACGT 1 cut(s) 714
TaqI TCGA 1 cut(s) 36
TasI AATT 8 cut(s) 114, 200, 599, 762, 873, 879, 1043, 1091
TatI WGTACW 2 cut(s) 910, 1282
TfiI GAWTC 5 cut(s) 20, 173, 894, 940, 1182
Tru1I TTAA 3 cut(s) 1014, 1094, 1146
Tru9I TTAA 3 cut(s) 1014, 1094, 1146
TscAI CASTG 5 cut(s) 328, 363, 520, 613, 1192
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 2 cut(s) 253, 1136
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 5 cut(s) 140, 439, 536, 635, 831
TspGWI ACGGA 1 cut(s) 963
TspRI CASTG 5 cut(s) 328, 363, 520, 613, 1192
VpaK11BI GGWCC 2 cut(s) 310, 844
XagI CCTNNNNNAGG 1 cut(s) 591
XapI RAATTY 1 cut(s) 599
XmiI GTMKAC 1 cut(s) 1057
XspI CTAG 2 cut(s) 768, 1140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.