Prupe.4G154200_v2.0.a1

Belongs to the actin family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
8831330 .. 8838442
7113 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G154200.1

Sequence Viewer

Length: 1329 bp
ATGTACGGAGGCGATGAAGTCTCGGCTATTGTTCTTGACCTCGGCTCCCACACTTGCAAAGCTGGCTATGCCGGCGAAGATGCGCCCAAGGCAGTCTTCCCATCAGTTGTCGGATCAATTGATCAAATGGAAGTTGAAACTGAAACAGAAAATAATTCCGGACCTGCTGTAGATCCAAAAAGTAATTCCAAATCTCTTGATTCTGACAAAGCCAAGGGAAAACGCAAATTATATGTGGGATCTCAAGCCTTAGGGTACCGTCGGGATCATATGGAGGTGCTGTCACCCATAAAGGATGGGGTTATTGTTGACTGGGAAGCTGTGGAGGGCATATGGGACCATGCTTTTAGGGAATGCCTATTGGTTGATCCTAAAGAGCATCCAATGCTACTTGCAGAGCCATCTTCTAACACTCAACAACAGAGAGAAAGGACGGCAGAGCTTATGTTTGAAAAGTACAAAGTTCCTGCCTTATTTTTGGCCAAGAATGCTGTTCTCACATCTTTTGCATCAGGCCGTGCTACCTCGTTAGTAGTTGATAGTGGTGGAGGATCAACTACAGTTGCTCCAGTTCATGATGGCTATGTTCTTCAAAAGGCTGTGGCATCTTCTCCTATTGGAGGAGAATTTCTTACTGATTGTTTGACAAAAAGTTTGGAAAGTAAAGGAATGACGATTAAACCCAGATATTCTTTCAAGAGAAAGGAAACACGACCTGGAGAGTTTCAGGTGGTAGATGTTGATTTTCCAAATACCACAGAAAGCTACAAACTCTATTCCCAGAGGGTGGTTGCTAGTGATATCAAAGAATGTGTGTGTAGAGCCCCTGACACTCCATATGATGAAAGCGCATATTCAAACATTCCAACGACCTCATATGAGCTTCCTGATGGCCAGACAATTGAAATTGGAGCGGATAGATTCAAGATTCCTGATATTCTATTTAACCCGTCCTTGGCTCAGACAATTCCCGGTGTTGAGAATTTTGCGGAGATTGCTCCTCTTCGTGGTTTGCCTCAAATGGTTATCGAGAGCATTAACAAGTGTGACGTGGACATTCGTCGTGAATTATTTAGTAGTATACTGCTTGCCGGTGGCACAGCATCAATGCAACAGTTAAAGGAACGCCTTGAGAAAGACTTGCTGGAGGAGTCTCCTCAAGCTGCTAGAGTTAAAGTATTGGCGAGTGGGAATTCAACTGAAAGGCGATTCAGTGTTTGGATAGGTGGGAGTATACTGGCGTCTCTTGGTTCATTCCAGCAAATGTGGTTCTCCAAGGCTGAGTATGAGGAGCATGGGGCTTCTTATGTACAAAGAAAATGCCCTTGA

Protein Analysis

443

Amino Acids

48.49

Weight (kDa)

5.16

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014110)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18450
fragaria_vesca FvH4_3g17390 FvH4_6g50670
malus_domestica MD03G1252000.v1.1 MD11G1273400.v1.1
prunus_persica Prupe.4G154200_v2.0.a1
pyrus_communis pycom03g19950
rosa_chinensis RchiOBHm_Chr5g0028921
rosa_laevigata RLG00000033127
rosa_multiflora Rmu_sc0005178.1_g000021
rosa_roxburghii Rroxscaffold_1G00050990
rosa_rugosa Rorug05G0111500
rosa_samantha Rh5AG203800 Rh5BG202100 Rh5CG222800 Rh5DG205400
rosa_wichuraiana Rw5G018450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 172
Acc65I GGTACC 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 255
AccB7I CCANNNNNTGG 1 cut(s) 787
AccBSI CCGCTC 1 cut(s) 914
AccI GTMKAC 2 cut(s) 1081, 1234
AccIII TCCGGA 1 cut(s) 158
AciI CCGC 2 cut(s) 914, 989
AclWI GGATC 6 cut(s) 121, 167, 247, 273, 362, 559
AcoI YGGCCR 2 cut(s) 480, 892
AcsI RAATTY 3 cut(s) 626, 982, 1192
AcyI GRCGYC 1 cut(s) 1241
AfaI GTAC 4 cut(s) 5, 257, 458, 1311
AfiI CCNNNNNNNGG 4 cut(s) 620, 787, 955, 1007
AgsI TTSAA 8 cut(s) 137, 452, 593, 697, 858, 905, 925, 1197
AjiI CACGTC 1 cut(s) 1051
AjnI CCWGG 1 cut(s) 715
AjuI GAANNNNNNNTTGG 4 cut(s) 80, 112, 169, 201
AluBI AGCT 6 cut(s) 62, 320, 442, 765, 883, 1163
AluI AGCT 6 cut(s) 62, 320, 442, 765, 883, 1163
Alw26I GTCTC 3 cut(s) 25, 1158, 1248
AlwI GGATC 6 cut(s) 121, 167, 247, 273, 362, 559
Aor13HI TCCGGA 1 cut(s) 158
AoxI GGCC 3 cut(s) 480, 514, 892
ApeKI GCWGC 1 cut(s) 1163
ApoI RAATTY 3 cut(s) 626, 982, 1192
ArsI GACNNNNNNTTYG 2 cut(s) 637, 669
Asp718I GGTACC 1 cut(s) 255
AspLEI GCGC 2 cut(s) 85, 851
AspS9I GGNCC 2 cut(s) 161, 337
AsuC2I CCSGG 1 cut(s) 972
AsuHPI GGTGA 1 cut(s) 276
AvaII GGWCC 2 cut(s) 161, 337
AxyI CCTNAGG 1 cut(s) 250
BalI TGGCCA 2 cut(s) 482, 894
BanI GGYRCC 1 cut(s) 255
BanII GRGCYC 1 cut(s) 826
BbsI GAAGAC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 1150
BccI CCATC 5 cut(s) 109, 290, 409, 572, 884
BceAI ACGGC 2 cut(s) 450, 501
BciT130I CCWGG 1 cut(s) 717
BclI TGATCA 1 cut(s) 121
BcnI CCSGG 1 cut(s) 972
BcoDI GTCTC 3 cut(s) 25, 1158, 1248
BfaI CTAG 2 cut(s) 795, 1167
BfmI CTRYAG 2 cut(s) 168, 558
BfuAI ACCTGC 1 cut(s) 172
BisI GCNGC 1 cut(s) 1164
BlsI GCNGC 1 cut(s) 1165
Bme1390I CCNGG 2 cut(s) 717, 972
Bme18I GGWCC 2 cut(s) 161, 337
BmgBI CACGTC 1 cut(s) 1051
BmgT120I GGNCC 2 cut(s) 161, 337
BmiI GGNNCC 3 cut(s) 46, 257, 338
BmrFI CCNGG 2 cut(s) 717, 972
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 5 cut(s) 70, 388, 518, 614, 1112
BmuI ACTGGG 1 cut(s) 322
BoxI GACNNNNGTC 1 cut(s) 1059
BpiI GAAGAC 1 cut(s) 88
BpmI CTGGAG 3 cut(s) 552, 738, 1166
BpuEI CTTGAG 3 cut(s) 228, 1143, 1151
BpuMI CCSGG 1 cut(s) 972
BsaHI GRCGYC 1 cut(s) 1241
BsaJI CCNNGG 5 cut(s) 40, 87, 213, 954, 1275
BsaWI WCCGGW 1 cut(s) 158
BsaXI ACNNNNNCTCC 6 cut(s) 29, 59, 266, 296, 550, 580
Bsc4I CCNNNNNNNGG 4 cut(s) 620, 787, 955, 1007
Bse118I RCCGGY 2 cut(s) 71, 1091
Bse1I ACTGG 3 cut(s) 317, 569, 1242
Bse21I CCTNAGG 1 cut(s) 250
BseAI TCCGGA 1 cut(s) 158
BseBI CCWGG 1 cut(s) 717
BseDI CCNNGG 5 cut(s) 40, 87, 213, 954, 1275
BseGI GGATG 2 cut(s) 301, 379
BseLI CCNNNNNNNGG 4 cut(s) 620, 787, 955, 1007
BseMII CTCAG 2 cut(s) 974, 1272
BseNI ACTGG 3 cut(s) 317, 569, 1242
BseRI GAGGAG 5 cut(s) 636, 990, 1146, 1163, 1304
BseXI GCAGC 1 cut(s) 1150
BshFI GGCC 3 cut(s) 482, 516, 894
BshNI GGYRCC 1 cut(s) 255
BsiSI CCGG 4 cut(s) 72, 159, 972, 1092
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 4 cut(s) 620, 787, 955, 1007
BsmAI GTCTC 3 cut(s) 25, 1158, 1248
BsmBI CGTCTC 1 cut(s) 1248
BsmFI GGGAC 1 cut(s) 350
BsmI GAATGC 2 cut(s) 359, 493
BsnI GGCC 3 cut(s) 482, 516, 894
Bsp1286I GDGCHC 1 cut(s) 826
Bsp13I TCCGGA 1 cut(s) 158
Bsp1407I TGTACA 1 cut(s) 1309
Bsp143I GATC 7 cut(s) 113, 121, 172, 239, 265, 367, 551
BspACI CCGC 2 cut(s) 914, 989
BspANI GGCC 3 cut(s) 482, 516, 894
BspCNI CTCAG 2 cut(s) 973, 1273
BspEI TCCGGA 1 cut(s) 158
BspHI TCATGA 1 cut(s) 574
BspLI GGNNCC 3 cut(s) 46, 257, 338
BspMI ACCTGC 1 cut(s) 172
BspPI GGATC 6 cut(s) 121, 167, 247, 273, 362, 559
BspT107I GGYRCC 1 cut(s) 255
BsrBI CCGCTC 1 cut(s) 914
BsrFI RCCGGY 2 cut(s) 71, 1091
BsrGI TGTACA 1 cut(s) 1309
BsrI ACTGG 3 cut(s) 317, 569, 1242
BssAI RCCGGY 2 cut(s) 71, 1091
BssECI CCNNGG 5 cut(s) 40, 87, 213, 954, 1275
BssMI GATC 7 cut(s) 113, 121, 172, 239, 265, 367, 551
BssNAI GTATAC 2 cut(s) 1082, 1235
BssNI GRCGYC 1 cut(s) 1241
BssT1I CCWWGG 4 cut(s) 87, 213, 954, 1275
Bst1107I GTATAC 2 cut(s) 1082, 1235
Bst2UI CCWGG 1 cut(s) 717
Bst4CI ACNGT 3 cut(s) 260, 562, 1116
Bst6I CTCTTC 1 cut(s) 1008
BstACI GRCGYC 1 cut(s) 1241
BstAPI GCANNNNNTGC 1 cut(s) 385
BstAUI TGTACA 1 cut(s) 1309
BstC8I GCNNGC 3 cut(s) 64, 73, 1089
BstDEI CTNAG 3 cut(s) 250, 960, 1281
BstENI CCTNNNNNAGG 1 cut(s) 618
BstF5I GGATG 2 cut(s) 301, 379
BstHHI GCGC 2 cut(s) 85, 851
BstKTI GATC 7 cut(s) 116, 124, 175, 242, 268, 370, 554
BstMAI GTCTC 3 cut(s) 25, 1158, 1248
BstMBI GATC 7 cut(s) 113, 121, 172, 239, 265, 367, 551
BstMWI GCNNNNNNNGC 7 cut(s) 63, 68, 72, 89, 385, 488, 995
BstNI CCWGG 1 cut(s) 717
BstPAI GACNNNNGTC 1 cut(s) 1059
BstSCI CCNGG 2 cut(s) 715, 970
BstSFI CTRYAG 2 cut(s) 168, 558
BstV1I GCAGC 1 cut(s) 1150
BstV2I GAAGAC 1 cut(s) 88
BstX2I RGATCY 2 cut(s) 172, 239
BstYI RGATCY 2 cut(s) 172, 239
BstZ17I GTATAC 2 cut(s) 1082, 1235
Bsu36I CCTNAGG 1 cut(s) 250
BsuRI GGCC 3 cut(s) 482, 516, 894
BtgZI GCGATG 1 cut(s) 27
BtrI CACGTC 1 cut(s) 1051
BtsCI GGATG 2 cut(s) 301, 379
BtsIMutI CAGTG 1 cut(s) 1219
BveI ACCTGC 1 cut(s) 172
Cac8I GCNNGC 3 cut(s) 64, 73, 1089
CciI TCATGA 1 cut(s) 574
CfoI GCGC 2 cut(s) 85, 851
Cfr10I RCCGGY 2 cut(s) 71, 1091
Cfr13I GGNCC 2 cut(s) 161, 337
CseI GACGC 1 cut(s) 1230
Csp6I GTAC 4 cut(s) 4, 256, 457, 1310
CviAII CATG 3 cut(s) 341, 575, 1295
CviQI GTAC 4 cut(s) 4, 256, 457, 1310
DdeI CTNAG 3 cut(s) 250, 960, 1281
DpnI GATC 7 cut(s) 115, 123, 174, 241, 267, 369, 553
DpnII GATC 7 cut(s) 113, 121, 172, 239, 265, 367, 551
EaeI YGGCCR 2 cut(s) 480, 892
Eam1104I CTCTTC 1 cut(s) 1008
EarI CTCTTC 1 cut(s) 1008
Eco130I CCWWGG 4 cut(s) 87, 213, 954, 1275
Eco24I GRGCYC 1 cut(s) 826
Eco32I GATATC 1 cut(s) 802
Eco47I GGWCC 2 cut(s) 161, 337
Eco81I CCTNAGG 1 cut(s) 250
EcoNI CCTNNNNNAGG 1 cut(s) 618
EcoRI GAATTC 1 cut(s) 1192
EcoRII CCWGG 1 cut(s) 715
EcoRV GATATC 1 cut(s) 802
EcoT14I CCWWGG 4 cut(s) 87, 213, 954, 1275
EcoT38I GRGCYC 1 cut(s) 826
ErhI CCWWGG 4 cut(s) 87, 213, 954, 1275
Esp3I CGTCTC 1 cut(s) 1248
FaeI CATG 3 cut(s) 344, 578, 1298
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FaqI GGGAC 1 cut(s) 350
FatI CATG 3 cut(s) 340, 574, 1294
FauNDI CATATG 4 cut(s) 270, 332, 838, 877
FbaI TGATCA 1 cut(s) 121
FblI GTMKAC 2 cut(s) 1081, 1234
Fnu4HI GCNGC 1 cut(s) 1164
FokI GGATG 2 cut(s) 308, 366
FriOI GRGCYC 1 cut(s) 826
Fsp4HI GCNGC 1 cut(s) 1164
FspBI CTAG 2 cut(s) 795, 1167
GlaI GCGC 2 cut(s) 84, 850
GluI GCNGC 1 cut(s) 1164
GsuI CTGGAG 3 cut(s) 552, 738, 1166
HaeIII GGCC 3 cut(s) 482, 516, 894
HapII CCGG 4 cut(s) 72, 159, 972, 1092
HgaI GACGC 1 cut(s) 1230
HhaI GCGC 2 cut(s) 85, 851
Hin1I GRCGYC 1 cut(s) 1241
Hin1II CATG 3 cut(s) 344, 578, 1298
Hin6I GCGC 2 cut(s) 83, 849
HinP1I GCGC 2 cut(s) 83, 849
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 5 cut(s) 200, 921, 928, 1151, 1209
HpaII CCGG 4 cut(s) 72, 159, 972, 1092
HphI GGTGA 1 cut(s) 276
Hpy166II GTNNAC 4 cut(s) 310, 1054, 1082, 1235
Hpy188I TCNGA 3 cut(s) 113, 205, 963
Hpy8I GTNNAC 4 cut(s) 310, 1054, 1082, 1235
Hpy99I CGWCG 2 cut(s) 264, 1065
HpyCH4III ACNGT 3 cut(s) 260, 562, 1116
HpyCH4IV ACGT 1 cut(s) 1050
HpyCH4V TGCA 4 cut(s) 57, 395, 509, 1111
HpyF10VI GCNNNNNNNGC 7 cut(s) 63, 68, 72, 89, 385, 488, 995
HpyF3I CTNAG 3 cut(s) 250, 960, 1281
HpySE526I ACGT 1 cut(s) 1050
Hsp92I GRCGYC 1 cut(s) 1241
Hsp92II CATG 3 cut(s) 344, 578, 1298
HspAI GCGC 2 cut(s) 83, 849
Kpn2I TCCGGA 1 cut(s) 158
KpnI GGTACC 1 cut(s) 259
KroI GCCGGC 1 cut(s) 71
KroNI GCCGGC 1 cut(s) 73
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 7 cut(s) 113, 121, 172, 239, 265, 367, 551
LmnI GCTCC 5 cut(s) 50, 571, 911, 1003, 1291
Lsp1109I GCAGC 1 cut(s) 1150
LweI GCATC 5 cut(s) 70, 388, 518, 614, 1112
MaeI CTAG 2 cut(s) 795, 1167
MaeII ACGT 1 cut(s) 1050
MaeIII GTNAC 2 cut(s) 282, 1046
MalI GATC 7 cut(s) 115, 123, 174, 241, 267, 369, 553
MbiI CCGCTC 1 cut(s) 914
MboI GATC 7 cut(s) 113, 121, 172, 239, 265, 367, 551
MboII GAAGA 6 cut(s) 88, 89, 396, 581, 600, 995
MfeI CAATTG 2 cut(s) 117, 900
MflI RGATCY 2 cut(s) 172, 239
MhlI GDGCHC 1 cut(s) 826
MlsI TGGCCA 2 cut(s) 482, 894
MluNI TGGCCA 2 cut(s) 482, 894
MlyI GAGTC 1 cut(s) 1160
MmeI TCCRAC 2 cut(s) 91, 890
Mox20I TGGCCA 2 cut(s) 482, 894
MroI TCCGGA 1 cut(s) 158
MroNI GCCGGC 1 cut(s) 71
MscI TGGCCA 2 cut(s) 482, 894
MseI TTAA 5 cut(s) 678, 945, 1038, 1118, 1173
Msp20I TGGCCA 2 cut(s) 482, 894
MspI CCGG 4 cut(s) 72, 159, 972, 1092
MspR9I CCNGG 2 cut(s) 717, 972
MunI CAATTG 2 cut(s) 117, 900
Mva1269I GAATGC 2 cut(s) 359, 493
MvaI CCWGG 1 cut(s) 717
MwoI GCNNNNNNNGC 7 cut(s) 63, 68, 72, 89, 385, 488, 995
NaeI GCCGGC 1 cut(s) 73
NciI CCSGG 1 cut(s) 972
NdeI CATATG 4 cut(s) 270, 332, 838, 877
NdeII GATC 7 cut(s) 113, 121, 172, 239, 265, 367, 551
NgoMIV GCCGGC 1 cut(s) 71
NlaIII CATG 3 cut(s) 344, 578, 1298
NlaIV GGNNCC 3 cut(s) 46, 257, 338
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 2 cut(s) 282, 1046
PagI TCATGA 1 cut(s) 574
PctI GAATGC 2 cut(s) 359, 493
PdiI GCCGGC 1 cut(s) 73
PfeI GAWTC 4 cut(s) 200, 921, 928, 1209
PflMI CCANNNNNTGG 1 cut(s) 787
PkrI GCNGC 1 cut(s) 1165
PleI GAGTC 1 cut(s) 1159
PpsI GAGTC 1 cut(s) 1159
PshAI GACNNNNGTC 1 cut(s) 1059
Psp6I CCWGG 1 cut(s) 715
PspGI CCWGG 1 cut(s) 715
PspN4I GGNNCC 3 cut(s) 46, 257, 338
PspPI GGNCC 2 cut(s) 161, 337
PsuI RGATCY 2 cut(s) 172, 239
RsaI GTAC 4 cut(s) 5, 257, 458, 1311
RsaNI GTAC 4 cut(s) 4, 256, 457, 1310
SaqAI TTAA 5 cut(s) 678, 945, 1038, 1118, 1173
SatI GCNGC 1 cut(s) 1164
Sau3AI GATC 7 cut(s) 113, 121, 172, 239, 265, 367, 551
Sau96I GGNCC 2 cut(s) 161, 337
SchI GAGTC 1 cut(s) 1160
ScrFI CCNGG 2 cut(s) 717, 972
SduI GDGCHC 1 cut(s) 826
SfaNI GCATC 5 cut(s) 70, 388, 518, 614, 1112
SfcI CTRYAG 2 cut(s) 168, 558
SinI GGWCC 2 cut(s) 161, 337
SmlI CTYRAG 3 cut(s) 243, 1130, 1158
SmoI CTYRAG 3 cut(s) 243, 1130, 1158
SsiI CCGC 2 cut(s) 914, 989
SspMI CTAG 2 cut(s) 795, 1167
StyD4I CCNGG 2 cut(s) 715, 970
StyI CCWWGG 4 cut(s) 87, 213, 954, 1275
TaaI ACNGT 3 cut(s) 260, 562, 1116
TaiI ACGT 1 cut(s) 1053
TaqI TCGA 1 cut(s) 1029
TatI WGTACW 2 cut(s) 456, 1309
TfiI GAWTC 4 cut(s) 200, 921, 928, 1209
Tru1I TTAA 5 cut(s) 678, 945, 1038, 1118, 1173
Tru9I TTAA 5 cut(s) 678, 945, 1038, 1118, 1173
TscAI CASTG 1 cut(s) 1219
TseFI GTSAC 2 cut(s) 282, 1046
TseI GCWGC 1 cut(s) 1163
Tsp45I GTSAC 2 cut(s) 282, 1046
TspDTI ATGAA 4 cut(s) 30, 563, 858, 1242
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 1 cut(s) 1219
Van91I CCANNNNNTGG 1 cut(s) 787
VpaK11BI GGWCC 2 cut(s) 161, 337
XagI CCTNNNNNAGG 1 cut(s) 618
XapI RAATTY 3 cut(s) 626, 982, 1192
XmiI GTMKAC 2 cut(s) 1081, 1234
XspI CTAG 2 cut(s) 795, 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.