AT1G18810

Protein PHYTOCHROME KINASE SUBSTRATE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015881
Physical Location & Seq
Reverse (-)
6485515 .. 6487153
1639 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G18810.1

Sequence Viewer

Length: 1164 bp
ATGGATGCTGAAAAGAAGAGTGCCCATTTTCGCCAAATCTCATCTTATAAACCACAATTACTTGTCCTCTCCTCAATCCAAGAAAACCCTTCTTCAAAAATCTCAGAAAAAGCCAATATCAAAGCTGACAATGACGCCGAGATTGGAGTTTTCGGAGCAGAAAAGTACTTCAGCATGAAGCTAGATCATGTTGATTCCACGGCGGATATCACCAAGCAACATGAAAAGGAAAACACACATGATCATCCTAATGCTAATCCTAATCCTAATCCTAATCCTCATCCTCATCCTCATCCCCAGTTGACGAAAACGACGTCGTCAAGATCAAAAACAAGCCGACATGGAACGCCAAGTGTAAGATCCGAGTCAAGTTGCAACAGTCAAACCTTTCTCATGAGGATTAACAACCACAATGAAAATAAGCAACGGAAAATGAACGATACGAGCATCTCTTTTGGTGGGTTTAGATGTTACGGTCCCTGCTCTGGGGTCAAAACCGTCCATACCGACCCAAAAAACTCCTGTAAAAGTAGAAATTCCGATCGGGATTTTGTTGCTTACGACGCAAGAAAGCACAACGACAAACCAAGACTCCATTTTGAAGCCAAGAAAGCGGATTTTCATGCGCAAGAGAAGATTTCATTACCTATTCAAAGGTCCGATATCGCCATGAACCTCGAGAGAAAGCTCTCTCTGCTTACATGGGACGCAATACCAAACCAACTCTCTACCAAGAACAACAATCACAACAATAATGGTAATAACTCTTCAATGAGTAGCAACACGCAAGAGGAAGAGACAGCAAGTGTAGCAAGTTCTGATTTGTTCGAGATTGAGAACATAACGAGCAGTGTCTATGAGCCGAGTGAGGCCAGCATTGGATGGAGTGTGGTAACGGGAAGTATGGCAGATCAATCGGTGATTTCGGATTTCGATATGATGAAGAGGGTCACGAGAAATGGTCCGGTGGTTAAAACCAAACCGGTGATTGGTGAGAAAGTCCGGTCGGCTGGGTTTTTGTCGGGTTGTAAGAGTCACAAAGCTGTCTCGGTTGTTGATAGTTCTAGAAAAGTGAAAGAAACAGCCAAGGTTGATCATCACGAGATGTCTCATCAGAAGAAGTTTAAAACTGAGATTAGGATTCAAGACTTGAGCTTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

387

Amino Acids

43.29

Weight (kDa)

9.07

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015881)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18810
fragaria_vesca FvH4_5g15090
malus_domestica MD06G1192200.v1.1 MD14G1198800.v1.1
prunus_persica Prupe.5G191900_v2.0.a1
pyrus_communis pycom06g17030
rosa_chinensis RchiOBHm_Chr7g0181121
rosa_laevigata RLG00000005212
rosa_roxburghii Rroxscaffold_3G00272260
rosa_rugosa Rorug06G0438700
rosa_samantha Rh7AG040500 Rh7BG039900 Rh7CG041900 Rh7DG040300
rosa_wichuraiana Rw7G003340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 48
AatII GACGTC 1 cut(s) 317
Acc16I TGCGCA 1 cut(s) 627
AciI CCGC 2 cut(s) 203, 614
AclWI GGATC 1 cut(s) 354
AcsI RAATTY 1 cut(s) 535
AcuI CTGAAG 1 cut(s) 154
AcyI GRCGYC 2 cut(s) 135, 314
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 3 cut(s) 485, 486, 989
AgeI ACCGGT 1 cut(s) 982
AgsI TTSAA 5 cut(s) 96, 602, 653, 771, 1145
AluBI AGCT 5 cut(s) 125, 181, 688, 1043, 1155
AluI AGCT 5 cut(s) 125, 181, 688, 1043, 1155
Alw26I GTCTC 3 cut(s) 791, 1051, 1113
AlwI GGATC 1 cut(s) 354
Ama87I CYCGRG 1 cut(s) 677
AoxI GGCC 1 cut(s) 870
ApoI RAATTY 1 cut(s) 535
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AsiGI ACCGGT 1 cut(s) 982
AspLEI GCGC 1 cut(s) 628
AspS9I GGNCC 3 cut(s) 476, 657, 962
AsuHPI GGTGA 4 cut(s) 202, 931, 997, 1004
AvaI CYCGRG 1 cut(s) 677
AvaII GGWCC 3 cut(s) 476, 657, 962
BaeGI GKGCMC 1 cut(s) 25
BarI GAAGNNNNNNTAC 2 cut(s) 751, 783
BauI CACGAG 2 cut(s) 952, 1100
BccI CCATC 1 cut(s) 876
BceAI ACGGC 1 cut(s) 216
BcgI CGANNNNNNTGC 2 cut(s) 897, 931
BclI TGATCA 2 cut(s) 241, 1093
BcoDI GTCTC 3 cut(s) 791, 1051, 1113
BfaI CTAG 2 cut(s) 182, 1065
BmcAI AGTACT 1 cut(s) 167
Bme18I GGWCC 3 cut(s) 476, 657, 962
BmeT110I CYCGRG 1 cut(s) 677
BmgT120I GGNCC 3 cut(s) 476, 657, 962
BmiI GGNNCC 1 cut(s) 478
BmrI ACTGGG 1 cut(s) 292
BmsI GCATC 1 cut(s) 456
BmuI ACTGGG 1 cut(s) 292
BsaHI GRCGYC 2 cut(s) 135, 314
BsaJI CCNNGG 2 cut(s) 198, 1086
BsaWI WCCGGW 3 cut(s) 964, 982, 1002
BsaXI ACNNNNNCTCC 2 cut(s) 576, 606
Bsc4I CCNNNNNNNGG 3 cut(s) 485, 486, 989
Bse118I RCCGGY 1 cut(s) 982
Bse1I ACTGG 1 cut(s) 298
BseDI CCNNGG 2 cut(s) 198, 1086
BseGI GGATG 6 cut(s) 10, 244, 280, 286, 292, 887
BseLI CCNNNNNNNGG 3 cut(s) 485, 486, 989
BseMII CTCAG 2 cut(s) 117, 1122
BseNI ACTGG 1 cut(s) 298
BseRI GAGGAG 1 cut(s) 61
BseSI GKGCMC 1 cut(s) 25
BseYI CCCAGC 1 cut(s) 1010
Bsh1285I CGRYCG 2 cut(s) 544, 1007
BshFI GGCC 1 cut(s) 872
BshTI ACCGGT 1 cut(s) 982
BsiEI CGRYCG 2 cut(s) 544, 1007
BsiHKCI CYCGRG 1 cut(s) 677
BsiSI CCGG 3 cut(s) 965, 983, 1003
BslFI GGGAC 2 cut(s) 462, 719
BslI CCNNNNNNNGG 3 cut(s) 485, 486, 989
BsmAI GTCTC 3 cut(s) 791, 1051, 1113
BsmFI GGGAC 2 cut(s) 462, 719
BsnI GGCC 1 cut(s) 872
BsoBI CYCGRG 1 cut(s) 677
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 7 cut(s) 184, 241, 323, 359, 541, 910, 1093
BspACI CCGC 2 cut(s) 203, 614
BspANI GGCC 1 cut(s) 872
BspCNI CTCAG 2 cut(s) 116, 1123
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 1 cut(s) 478
BspPI GGATC 1 cut(s) 354
BsrFI RCCGGY 1 cut(s) 982
BsrI ACTGG 1 cut(s) 298
BssAI RCCGGY 1 cut(s) 982
BssECI CCNNGG 2 cut(s) 198, 1086
BssMI GATC 7 cut(s) 184, 241, 323, 359, 541, 910, 1093
BssNI GRCGYC 2 cut(s) 135, 314
BssSI CACGAG 2 cut(s) 952, 1100
BssT1I CCWWGG 1 cut(s) 1086
Bst2BI CACGAG 2 cut(s) 952, 1100
Bst4CI ACNGT 3 cut(s) 380, 476, 499
Bst6I CTCTTC 4 cut(s) 11, 772, 789, 938
BstACI GRCGYC 2 cut(s) 135, 314
BstC8I GCNNGC 1 cut(s) 874
BstDEI CTNAG 2 cut(s) 103, 1131
BstDSI CCRYGG 1 cut(s) 198
BstF5I GGATG 6 cut(s) 10, 244, 280, 286, 292, 887
BstHHI GCGC 1 cut(s) 628
BstKTI GATC 7 cut(s) 187, 244, 326, 362, 544, 913, 1096
BstMAI GTCTC 3 cut(s) 791, 1051, 1113
BstMBI GATC 7 cut(s) 184, 241, 323, 359, 541, 910, 1093
BstMCI CGRYCG 2 cut(s) 544, 1007
BstMWI GCNNNNNNNGC 4 cut(s) 563, 611, 694, 809
BstSLI GKGCMC 1 cut(s) 25
BstX2I RGATCY 1 cut(s) 359
BstYI RGATCY 1 cut(s) 359
BsuRI GGCC 1 cut(s) 872
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 6 cut(s) 10, 244, 280, 286, 292, 887
BtsI GCAGTG 1 cut(s) 856
BtsIMutI CAGTG 1 cut(s) 856
Cac8I GCNNGC 1 cut(s) 874
CciI TCATGA 1 cut(s) 393
CfoI GCGC 1 cut(s) 628
Cfr10I RCCGGY 1 cut(s) 982
Cfr13I GGNCC 3 cut(s) 476, 657, 962
CseI GACGC 3 cut(s) 143, 572, 716
Csp6I GTAC 1 cut(s) 166
CspAI ACCGGT 1 cut(s) 982
CviAII CATG 9 cut(s) 175, 188, 221, 239, 341, 394, 623, 670, 702
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 2 cut(s) 103, 1131
DpnI GATC 7 cut(s) 186, 243, 325, 361, 543, 912, 1095
DpnII GATC 7 cut(s) 184, 241, 323, 359, 541, 910, 1093
DraI TTTAAA 1 cut(s) 1126
Eam1104I CTCTTC 4 cut(s) 11, 772, 789, 938
EarI CTCTTC 4 cut(s) 11, 772, 789, 938
EciI GGCGGA 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 1086
Eco32I GATATC 2 cut(s) 208, 664
Eco47I GGWCC 3 cut(s) 476, 657, 962
Eco57I CTGAAG 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 677
EcoRV GATATC 2 cut(s) 208, 664
EcoT14I CCWWGG 1 cut(s) 1086
ErhI CCWWGG 1 cut(s) 1086
FaeI CATG 9 cut(s) 178, 191, 224, 242, 344, 397, 626, 673, 705
FaqI GGGAC 2 cut(s) 462, 719
FatI CATG 9 cut(s) 174, 187, 220, 238, 340, 393, 622, 669, 701
FbaI TGATCA 2 cut(s) 241, 1093
FokI GGATG 6 cut(s) 17, 231, 267, 273, 279, 894
FspBI CTAG 2 cut(s) 182, 1065
FspI TGCGCA 1 cut(s) 627
GlaI GCGC 1 cut(s) 627
GsaI CCCAGC 1 cut(s) 1014
HaeIII GGCC 1 cut(s) 872
HapII CCGG 3 cut(s) 965, 983, 1003
HgaI GACGC 3 cut(s) 143, 572, 716
HhaI GCGC 1 cut(s) 628
Hin1I GRCGYC 2 cut(s) 135, 314
Hin1II CATG 9 cut(s) 178, 191, 224, 242, 344, 397, 626, 673, 705
Hin6I GCGC 1 cut(s) 626
HinP1I GCGC 1 cut(s) 626
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HinfI GANTC 5 cut(s) 194, 365, 591, 1033, 1141
HpaII CCGG 3 cut(s) 965, 983, 1003
HphI GGTGA 4 cut(s) 202, 931, 997, 1004
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 8 cut(s) 106, 155, 364, 541, 661, 820, 928, 1116
Hpy188III TCNNGA 9 cut(s) 321, 394, 545, 679, 829, 952, 1065, 1100, 1145
Hpy8I GTNNAC 1 cut(s) 303
Hpy99I CGWCG 3 cut(s) 316, 319, 566
HpyAV CCTTC 1 cut(s) 99
HpyCH4III ACNGT 3 cut(s) 380, 476, 499
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 1 cut(s) 375
HpyF10VI GCNNNNNNNGC 4 cut(s) 563, 611, 694, 809
HpyF3I CTNAG 2 cut(s) 103, 1131
HpySE526I ACGT 1 cut(s) 314
Hsp92I GRCGYC 2 cut(s) 135, 314
Hsp92II CATG 9 cut(s) 178, 191, 224, 242, 344, 397, 626, 673, 705
HspAI GCGC 1 cut(s) 626
Ksp22I TGATCA 2 cut(s) 241, 1093
Kzo9I GATC 7 cut(s) 184, 241, 323, 359, 541, 910, 1093
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 9 cut(s) 311, 471, 493, 535, 886, 978, 996, 996, 1016
LweI GCATC 1 cut(s) 456
MaeI CTAG 2 cut(s) 182, 1065
MaeII ACGT 1 cut(s) 314
MaeIII GTNAC 4 cut(s) 470, 892, 949, 1034
MalI GATC 7 cut(s) 186, 243, 325, 361, 543, 912, 1095
MboI GATC 7 cut(s) 184, 241, 323, 359, 541, 910, 1093
MboII GAAGA 7 cut(s) 28, 84, 646, 759, 806, 955, 1129
MflI RGATCY 1 cut(s) 359
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 2 cut(s) 56, 535
MlyI GAGTC 3 cut(s) 374, 585, 1042
MseI TTAA 4 cut(s) 402, 972, 1125, 1162
MslI CAYNNNNRTG 1 cut(s) 249
MspI CCGG 3 cut(s) 965, 983, 1003
MwoI GCNNNNNNNGC 4 cut(s) 563, 611, 694, 809
NdeII GATC 7 cut(s) 184, 241, 323, 359, 541, 910, 1093
NlaIII CATG 9 cut(s) 178, 191, 224, 242, 344, 397, 626, 673, 705
NlaIV GGNNCC 1 cut(s) 478
NmeAIII GCCGAG 2 cut(s) 163, 888
NmuCI GTSAC 2 cut(s) 949, 1034
NsbI TGCGCA 1 cut(s) 627
PaeR7I CTCGAG 1 cut(s) 677
PagI TCATGA 1 cut(s) 393
PcsI WCGNNNNNNNCGW 1 cut(s) 311
PfeI GAWTC 2 cut(s) 194, 1141
PflFI GACNNNGTC 1 cut(s) 316
PinAI ACCGGT 1 cut(s) 982
Ple19I CGATCG 1 cut(s) 544
PleI GAGTC 3 cut(s) 373, 585, 1041
PpsI GAGTC 3 cut(s) 373, 585, 1041
PsiI TTATAA 1 cut(s) 48
PspFI CCCAGC 1 cut(s) 1010
PspN4I GGNNCC 1 cut(s) 478
PspPI GGNCC 3 cut(s) 476, 657, 962
PsuI RGATCY 1 cut(s) 359
PsyI GACNNNGTC 1 cut(s) 316
PvuI CGATCG 1 cut(s) 544
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 4 cut(s) 402, 972, 1125, 1162
Sau3AI GATC 7 cut(s) 184, 241, 323, 359, 541, 910, 1093
Sau96I GGNCC 3 cut(s) 476, 657, 962
ScaI AGTACT 1 cut(s) 167
SchI GAGTC 3 cut(s) 374, 585, 1042
SduI GDGCHC 1 cut(s) 25
SfaNI GCATC 1 cut(s) 456
Sfr274I CTCGAG 1 cut(s) 677
SinI GGWCC 3 cut(s) 476, 657, 962
SlaI CTCGAG 1 cut(s) 677
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 2 cut(s) 677, 1150
SmoI CTYRAG 2 cut(s) 677, 1150
Sse9I AATT 2 cut(s) 56, 535
SsiI CCGC 2 cut(s) 203, 614
SspMI CTAG 2 cut(s) 182, 1065
StyI CCWWGG 1 cut(s) 1086
TaaI ACNGT 3 cut(s) 380, 476, 499
TaiI ACGT 1 cut(s) 317
TaqI TCGA 3 cut(s) 678, 828, 933
TasI AATT 2 cut(s) 56, 535
TatI WGTACW 1 cut(s) 165
TfiI GAWTC 2 cut(s) 194, 1141
Tru1I TTAA 4 cut(s) 402, 972, 1125, 1162
Tru9I TTAA 4 cut(s) 402, 972, 1125, 1162
TscAI CASTG 1 cut(s) 856
TseFI GTSAC 2 cut(s) 949, 1034
Tsp45I GTSAC 2 cut(s) 949, 1034
TspDTI ATGAA 8 cut(s) 191, 237, 429, 449, 611, 630, 686, 956
TspGWI ACGGA 1 cut(s) 442
TspRI CASTG 1 cut(s) 856
Tth111I GACNNNGTC 1 cut(s) 316
VpaK11BI GGWCC 3 cut(s) 476, 657, 962
XapI RAATTY 1 cut(s) 535
XbaI TCTAGA 1 cut(s) 1064
XhoI CTCGAG 1 cut(s) 677
XspI CTAG 2 cut(s) 182, 1065
ZraI GACGTC 1 cut(s) 315
ZrmI AGTACT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.