Rh7BG039900

Protein PHYTOCHROME KINASE SUBSTRATE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015881
Physical Location & Seq
Reverse (-)
2544168 .. 2545265
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG039900.1

Sequence Viewer

Length: 1098 bp
ATGGAAAGAGAGGCTAACAACAACACTAATCATACCCGCGACGCCTCGTTTTCTTCTTACCTCATCAGAGCAGAAGGGAACTTGGTGCTCAAGTCTCCTGCCTTGAACTTGAGCCAAAGGACCGATCAGGAGGGCGAAATCAGTGTCTTCGGCGCTGAAAGATATTTCAGCATGATGCTGGAAGATGACAGTCCAAGAGTACTTGTGGACTATAACAACACCAGCAGAGCTGGTCTGCAGCGACAGAAGCAACCAAAGACTAGTAGGCCAGGAACTCCTAGTACTTGTTCTAATGCAAGCTGGAACATTCAAACCGCTTTCTTGCCTTCTTGGAGAAGAAACCAGTCTCAGAACAAGAAGAAAAAGGTGAATGGAAAGAAGATATTTTCCGGTTTTGGTTGCAATGGTTCTTGTTCAGATCAGAAATCCATTCATGTTCATGAGGTTAATGTACGTGTTGCTAGAGATTTCAGGAAACTAAGTTTTGGAAGTGATCACCATCCTGTCAAGCAGTCTCCACCAAGAATTAAGGCCAAAGATCACGAGCTTCTTCACCGCTACCCTAGCTTTGGAGGATCAAACAAAAAACAACATTTTCAGTTTACAAATTTTGGAGCTAAAGAAGAGAAGAAGGCAAAACTAGAAGAAGAAGAGCCACAAAAATCGCTGGAAGTGTTTGGATCCGAAATGATGAAGAAGGAAGGAGAAGACTTAGTGGCAATAAATCTAGAGAGGAGACTTTCCATGTTATCTTGGGATGCCATTCCAAAAGCTCAAAGCCACTCAATTACTTCTGGAAATAGTGAAATGATCAATGAAGATATTGAGAGTGATGCTAGTTCTGATTTGTTTGAGATTGAGAACTTAACCGGCACCGGTCAGCCATTAATGTTCACAAAGCAAGCATCTGATGGATTGTCCATGGCTTCCCCCACCAAGTATGACTCAAGTGAGACCAGCATTGACTGTAGTGTTGTCACAGCTAATTTTGTCTCAGCTGCAGTTTCAGATTACGATGAGAAGAAATTAGTGCCGGCCAACCAACTGCAACATCAAAGCCTGAATTCTTCAATGGAAGTAGGCAAAGTTACAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

365

Amino Acids

40.78

Weight (kDa)

7.16

Isoelectric Point (pI)

47.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015881)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18810
fragaria_vesca FvH4_5g15090
malus_domestica MD06G1192200.v1.1 MD14G1198800.v1.1
prunus_persica Prupe.5G191900_v2.0.a1
pyrus_communis pycom06g17030
rosa_chinensis RchiOBHm_Chr7g0181121
rosa_laevigata RLG00000005212
rosa_roxburghii Rroxscaffold_3G00272260
rosa_rugosa Rorug06G0438700
rosa_samantha Rh7AG040500 Rh7BG039900 Rh7CG041900 Rh7DG040300
rosa_wichuraiana Rw7G003340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 872
AccII CGCG 1 cut(s) 39
AciI CCGC 3 cut(s) 37, 315, 556
AclWI GGATC 3 cut(s) 583, 675, 688
AcoI YGGCCR 1 cut(s) 1035
AcsI RAATTY 2 cut(s) 607, 1063
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 3 cut(s) 201, 283, 453
AfiI CCNNNNNNNGG 1 cut(s) 569
AflIII ACRYGT 1 cut(s) 454
AgeI ACCGGT 1 cut(s) 875
AgsI TTSAA 3 cut(s) 106, 311, 1071
AhlI ACTAGT 1 cut(s) 260
AjnI CCWGG 1 cut(s) 268
AluBI AGCT 8 cut(s) 230, 300, 547, 567, 617, 773, 983, 998
AluI AGCT 8 cut(s) 230, 300, 547, 567, 617, 773, 983, 998
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 6 cut(s) 99, 351, 519, 730, 947, 997
AlwI GGATC 3 cut(s) 583, 675, 688
AoxI GGCC 3 cut(s) 266, 531, 1035
ApeKI GCWGC 2 cut(s) 238, 998
ApoI RAATTY 2 cut(s) 607, 1063
ArsI GACNNNNNNTTYG 2 cut(s) 129, 161
AseI ATTAAT 1 cut(s) 887
AsiGI ACCGGT 1 cut(s) 875
AspLEI GCGC 1 cut(s) 155
AspS9I GGNCC 1 cut(s) 120
AsuHPI GGTGA 3 cut(s) 379, 488, 545
AvaII GGWCC 1 cut(s) 120
BamHI GGATCC 1 cut(s) 680
BanI GGYRCC 1 cut(s) 872
BauI CACGAG 1 cut(s) 542
BbsI GAAGAC 2 cut(s) 139, 714
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 2 cut(s) 250, 985
BccI CCATC 2 cut(s) 507, 905
BciT130I CCWGG 1 cut(s) 270
BclI TGATCA 2 cut(s) 493, 810
BcoDI GTCTC 6 cut(s) 99, 351, 519, 730, 947, 997
BcuI ACTAGT 1 cut(s) 260
BfaI CTAG 7 cut(s) 261, 279, 462, 564, 641, 728, 837
BfmI CTRYAG 3 cut(s) 236, 967, 999
BfoI RGCGCY 1 cut(s) 156
BisI GCNGC 2 cut(s) 239, 999
BlsI GCNGC 2 cut(s) 240, 1000
BmcAI AGTACT 2 cut(s) 201, 283
Bme1390I CCNGG 1 cut(s) 270
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 120
BmiI GGNNCC 2 cut(s) 682, 874
BmrFI CCNGG 1 cut(s) 270
BmsI GCATC 4 cut(s) 165, 748, 823, 914
BpiI GAAGAC 2 cut(s) 139, 714
BpuEI CTTGAG 3 cut(s) 74, 130, 931
BsaAI YACGTR 1 cut(s) 455
BsaBI GATNNNNATC 1 cut(s) 498
BsaHI GRCGYC 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 947
BsaJI CCNNGG 1 cut(s) 921
BsaWI WCCGGW 2 cut(s) 389, 875
Bsc4I CCNNNNNNNGG 1 cut(s) 569
Bse118I RCCGGY 3 cut(s) 869, 875, 1033
Bse1I ACTGG 1 cut(s) 343
Bse3DI GCAATG 1 cut(s) 409
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 921
BseGI GGATG 2 cut(s) 499, 763
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 1 cut(s) 569
BseMI GCAATG 1 cut(s) 409
BseMII CTCAG 2 cut(s) 362, 1008
BseNI ACTGG 1 cut(s) 343
BseRI GAGGAG 1 cut(s) 748
BseXI GCAGC 2 cut(s) 250, 985
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 3 cut(s) 268, 533, 1037
BshNI GGYRCC 1 cut(s) 872
BshTI ACCGGT 1 cut(s) 875
BsiHKAI GWGCWC 1 cut(s) 90
BsiSI CCGG 4 cut(s) 390, 870, 876, 1034
BslI CCNNNNNNNGG 1 cut(s) 569
BsmAI GTCTC 6 cut(s) 99, 351, 519, 730, 947, 997
BsnI GGCC 3 cut(s) 268, 533, 1037
Bso31I GGTCTC 1 cut(s) 947
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 7 cut(s) 124, 418, 493, 538, 575, 680, 810
Bsp19I CCATGG 1 cut(s) 921
BspACI CCGC 3 cut(s) 37, 315, 556
BspANI GGCC 3 cut(s) 268, 533, 1037
BspCNI CTCAG 2 cut(s) 361, 1007
BspFNI CGCG 1 cut(s) 39
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 2 cut(s) 682, 874
BspMAI CTGCAG 2 cut(s) 240, 1003
BspPI GGATC 3 cut(s) 583, 675, 688
BspQI GCTCTTC 1 cut(s) 645
BspT107I GGYRCC 1 cut(s) 872
BspTNI GGTCTC 1 cut(s) 947
BsrDI GCAATG 1 cut(s) 409
BsrFI RCCGGY 3 cut(s) 869, 875, 1033
BsrI ACTGG 1 cut(s) 343
BssAI RCCGGY 3 cut(s) 869, 875, 1033
BssECI CCNNGG 1 cut(s) 921
BssMI GATC 7 cut(s) 124, 418, 493, 538, 575, 680, 810
BssNI GRCGYC 1 cut(s) 42
BssSI CACGAG 1 cut(s) 542
BssT1I CCWWGG 1 cut(s) 921
Bst2BI CACGAG 1 cut(s) 542
Bst2UI CCWGG 1 cut(s) 270
Bst4CI ACNGT 2 cut(s) 191, 968
Bst6I CTCTTC 2 cut(s) 618, 645
BstACI GRCGYC 1 cut(s) 42
BstBAI YACGTR 1 cut(s) 455
BstC8I GCNNGC 3 cut(s) 298, 903, 1035
BstDEI CTNAG 4 cut(s) 348, 479, 712, 994
BstDSI CCRYGG 1 cut(s) 921
BstF5I GGATG 2 cut(s) 499, 763
BstFNI CGCG 1 cut(s) 39
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 7 cut(s) 127, 421, 496, 541, 578, 683, 813
BstMAI GTCTC 6 cut(s) 99, 351, 519, 730, 947, 997
BstMBI GATC 7 cut(s) 124, 418, 493, 538, 575, 680, 810
BstMWI GCNNNNNNNGC 2 cut(s) 247, 564
BstNI CCWGG 1 cut(s) 270
BstSCI CCNGG 1 cut(s) 268
BstSFI CTRYAG 3 cut(s) 236, 967, 999
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 2 cut(s) 250, 985
BstV2I GAAGAC 2 cut(s) 139, 714
BstX2I RGATCY 1 cut(s) 680
BstYI RGATCY 1 cut(s) 680
BsuRI GGCC 3 cut(s) 268, 533, 1037
BtgI CCRYGG 1 cut(s) 921
BtsCI GGATG 2 cut(s) 499, 763
BtsIMutI CAGTG 1 cut(s) 148
Cac8I GCNNGC 3 cut(s) 298, 903, 1035
CciI TCATGA 1 cut(s) 439
CfoI GCGC 1 cut(s) 155
Cfr10I RCCGGY 3 cut(s) 869, 875, 1033
Cfr13I GGNCC 1 cut(s) 120
CseI GACGC 1 cut(s) 50
Csp6I GTAC 3 cut(s) 200, 282, 452
CspAI ACCGGT 1 cut(s) 875
CviAII CATG 5 cut(s) 172, 434, 440, 745, 922
CviQI GTAC 3 cut(s) 200, 282, 452
DdeI CTNAG 4 cut(s) 348, 479, 712, 994
DpnI GATC 7 cut(s) 126, 420, 495, 540, 577, 682, 812
DpnII GATC 7 cut(s) 124, 418, 493, 538, 575, 680, 810
EaeI YGGCCR 1 cut(s) 1035
Eam1104I CTCTTC 2 cut(s) 618, 645
EarI CTCTTC 2 cut(s) 618, 645
Eco130I CCWWGG 1 cut(s) 921
Eco31I GGTCTC 1 cut(s) 947
Eco47I GGWCC 1 cut(s) 120
EcoRI GAATTC 1 cut(s) 1063
EcoRII CCWGG 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 921
ErhI CCWWGG 1 cut(s) 921
FaeI CATG 5 cut(s) 175, 437, 443, 748, 925
FaiI YATR 8 cut(s) 33, 173, 213, 435, 441, 746, 923, 942
FatI CATG 5 cut(s) 171, 433, 439, 744, 921
FauI CCCGC 1 cut(s) 44
FbaI TGATCA 2 cut(s) 493, 810
Fnu4HI GCNGC 2 cut(s) 239, 999
FokI GGATG 2 cut(s) 486, 770
Fsp4HI GCNGC 2 cut(s) 239, 999
FspBI CTAG 7 cut(s) 261, 279, 462, 564, 641, 728, 837
GlaI GCGC 1 cut(s) 154
GluI GCNGC 2 cut(s) 239, 999
HaeII RGCGCY 1 cut(s) 156
HaeIII GGCC 3 cut(s) 268, 533, 1037
HapII CCGG 4 cut(s) 390, 870, 876, 1034
HgaI GACGC 1 cut(s) 50
HhaI GCGC 1 cut(s) 155
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 5 cut(s) 175, 437, 443, 748, 925
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HinfI GANTC 1 cut(s) 944
HpaII CCGG 4 cut(s) 390, 870, 876, 1034
HphI GGTGA 3 cut(s) 379, 488, 545
Hpy166II GTNNAC 3 cut(s) 208, 603, 894
Hpy188I TCNGA 9 cut(s) 68, 351, 418, 423, 685, 844, 910, 1009, 1097
Hpy188III TCNNGA 6 cut(s) 128, 440, 472, 542, 728, 795
Hpy8I GTNNAC 3 cut(s) 208, 603, 894
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 5 cut(s) 68, 336, 625, 691, 695
HpyCH4III ACNGT 2 cut(s) 191, 968
HpyCH4IV ACGT 1 cut(s) 454
HpyCH4V TGCA 5 cut(s) 238, 296, 402, 1001, 1048
HpyF10VI GCNNNNNNNGC 2 cut(s) 247, 564
HpyF3I CTNAG 4 cut(s) 348, 479, 712, 994
HpySE526I ACGT 1 cut(s) 454
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 5 cut(s) 175, 437, 443, 748, 925
HspAI GCGC 1 cut(s) 153
KroI GCCGGC 1 cut(s) 1033
KroNI GCCGGC 1 cut(s) 1035
Ksp22I TGATCA 2 cut(s) 493, 810
Kzo9I GATC 7 cut(s) 124, 418, 493, 538, 575, 680, 810
LguI GCTCTTC 1 cut(s) 645
LmnI GCTCC 1 cut(s) 614
Lsp1109I GCAGC 2 cut(s) 250, 985
LweI GCATC 4 cut(s) 165, 748, 823, 914
MaeI CTAG 7 cut(s) 261, 279, 462, 564, 641, 728, 837
MaeII ACGT 1 cut(s) 454
MaeIII GTNAC 2 cut(s) 976, 1087
MalI GATC 7 cut(s) 126, 420, 495, 540, 577, 682, 812
MboI GATC 7 cut(s) 124, 418, 493, 538, 575, 680, 810
MflI RGATCY 1 cut(s) 680
MhlI GDGCHC 1 cut(s) 90
MluCI AATT 6 cut(s) 525, 607, 786, 985, 1025, 1063
MlyI GAGTC 1 cut(s) 938
MnlI CCTC 7 cut(s) 4, 55, 71, 124, 436, 566, 726
MroNI GCCGGC 1 cut(s) 1033
MseI TTAA 4 cut(s) 447, 528, 866, 887
MslI CAYNNNNRTG 1 cut(s) 438
MspA1I CMGCKG 1 cut(s) 998
MspI CCGG 4 cut(s) 390, 870, 876, 1034
MspR9I CCNGG 1 cut(s) 270
MvaI CCWGG 1 cut(s) 270
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 247, 564
NaeI GCCGGC 1 cut(s) 1035
NcoI CCATGG 1 cut(s) 921
NdeII GATC 7 cut(s) 124, 418, 493, 538, 575, 680, 810
NgoMIV GCCGGC 1 cut(s) 1033
NlaIII CATG 5 cut(s) 175, 437, 443, 748, 925
NlaIV GGNNCC 2 cut(s) 682, 874
NmuCI GTSAC 1 cut(s) 976
PagI TCATGA 1 cut(s) 439
PciSI GCTCTTC 1 cut(s) 645
PdiI GCCGGC 1 cut(s) 1035
PinAI ACCGGT 1 cut(s) 875
PkrI GCNGC 2 cut(s) 240, 1000
PleI GAGTC 1 cut(s) 938
PpsI GAGTC 1 cut(s) 938
Ppu21I YACGTR 1 cut(s) 455
PshBI ATTAAT 1 cut(s) 887
Psp6I CCWGG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 2 cut(s) 682, 874
PspPI GGNCC 1 cut(s) 120
PsrI GAACNNNNNNTAC 2 cut(s) 265, 297
PstI CTGCAG 2 cut(s) 240, 1003
PsuI RGATCY 1 cut(s) 680
PvuII CAGCTG 1 cut(s) 998
RsaI GTAC 3 cut(s) 201, 283, 453
RsaNI GTAC 3 cut(s) 200, 282, 452
RseI CAYNNNNRTG 1 cut(s) 438
SapI GCTCTTC 1 cut(s) 645
SaqAI TTAA 4 cut(s) 447, 528, 866, 887
SatI GCNGC 2 cut(s) 239, 999
Sau3AI GATC 7 cut(s) 124, 418, 493, 538, 575, 680, 810
Sau96I GGNCC 1 cut(s) 120
ScaI AGTACT 2 cut(s) 201, 283
SchI GAGTC 1 cut(s) 938
ScrFI CCNGG 1 cut(s) 270
SduI GDGCHC 1 cut(s) 90
SfaNI GCATC 4 cut(s) 165, 748, 823, 914
SfcI CTRYAG 3 cut(s) 236, 967, 999
SinI GGWCC 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 3 cut(s) 89, 109, 946
SmoI CTYRAG 3 cut(s) 89, 109, 946
SpeI ACTAGT 1 cut(s) 260
Sse9I AATT 6 cut(s) 525, 607, 786, 985, 1025, 1063
SsiI CCGC 3 cut(s) 37, 315, 556
SspMI CTAG 7 cut(s) 261, 279, 462, 564, 641, 728, 837
StyD4I CCNGG 1 cut(s) 268
StyI CCWWGG 1 cut(s) 921
TaaI ACNGT 2 cut(s) 191, 968
TaiI ACGT 1 cut(s) 457
TaqII GACCGA 1 cut(s) 137
TasI AATT 6 cut(s) 525, 607, 786, 985, 1025, 1063
TatI WGTACW 2 cut(s) 199, 281
Tru1I TTAA 4 cut(s) 447, 528, 866, 887
Tru9I TTAA 4 cut(s) 447, 528, 866, 887
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 976
TseI GCWGC 2 cut(s) 238, 998
Tsp45I GTSAC 1 cut(s) 976
TspDTI ATGAA 4 cut(s) 422, 428, 707, 831
TspRI CASTG 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 120
VspI ATTAAT 1 cut(s) 887
XapI RAATTY 2 cut(s) 607, 1063
XbaI TCTAGA 1 cut(s) 727
XspI CTAG 7 cut(s) 261, 279, 462, 564, 641, 728, 837
ZrmI AGTACT 2 cut(s) 201, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.