RLG00000005212

Protein PHYTOCHROME KINASE SUBSTRATE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0015881
Physical Location & Seq
Forward (+)
65907967 .. 65909064
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005212

Sequence Viewer

Length: 1098 bp
ATGGAAAGAGAGGCTAACAACAACACTAATCATACCCGCGACACCTGGTTTTCTTCTTACCTCACCAGAGCAGAAGGGAACTTGGTGCTCAAGTCTCCTGCCTTGAACTTGAGCCAAAAGACCGATCAGGAGGGCGAAATCAGTGTCTTCGGGGCTGAAAGATATTTCAGCATGATGCTGGAAGATGATAGTCCAAGAGTACTTATGGACTGTAACAACACCGGCAGAGCTGGTCTGCAGCGACTGAAGCAACCAAAGACTAGTAGGCCAGGAACTCCTAGTACTTGTTCTAATGCAAGCTGGAACATTCAAACCGCTTTCTTGCCTTCTCGGAGAAGAAACCAGTCTCAGAACAAGAAGAAAAAGGTGAATGGAAAGAAGATATTTTCCGGTTTTGGCTGCAATGGTTCTTGTTCAGATCAGAAGTCCATTCATGTTCATGAGGTTAATGTACGTGTTGCTAGAGATTTCAGGAAACCAAGTTTTGGAAGTGATCACCATCCTGTCAAGCAGTCTCCACCAAGAATTAAGGCCAAAGATCACGAGCTTCTTCAACACTACCCTAGCTTTGGACGATCAAACAAAAAACAACATTTTCAGTTTACAAATTTTGGAGCTAAAGAAGAGAAGAAGGCAAAACAAGAAGAAGAAGAAGAGCCACAAAAATCCCTGGAAGTGTTTGGATCCGAAATGATGAAGGAAGGAGAAGACTTAGTGGCAATAAATCTAGAGAGGAGACTTTCCATGTTATCTTGGGATGCCATTCCAAAAGCTCAAAGCCACTCAATTACTTTTGGAAATAGTGAAATGATCAATGAAGATATTGAGAGTGATGCTAGTTCTGATTTGTTTGAGATTGAGAACTTAACCGGCACCGGTCAGCCATTAATGTTCACAAAGCAAGCATCTGATGGATTGTCAATGGCTTCCCCCACCAAGTATGACTCAAGTGAGACCAGCATTGACTGTAGTGTTGTCACAGCTAATTTTGTCTCAGCTGCAGTTTCAGATTACGATGAGAAGAAATCAGTGCCAGCCAACCAACTGCAACATCAAAGCCTGGATTCTTCAATGGAAGTAGGCAAAGTTACAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

366

Amino Acids

40.87

Weight (kDa)

6.57

Isoelectric Point (pI)

54.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015881)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18810
fragaria_vesca FvH4_5g15090
malus_domestica MD06G1192200.v1.1 MD14G1198800.v1.1
prunus_persica Prupe.5G191900_v2.0.a1
pyrus_communis pycom06g17030
rosa_chinensis RchiOBHm_Chr7g0181121
rosa_laevigata RLG00000005212
rosa_roxburghii Rroxscaffold_3G00272260
rosa_rugosa Rorug06G0438700
rosa_samantha Rh7AG040500 Rh7BG039900 Rh7CG041900 Rh7DG040300
rosa_wichuraiana Rw7G003340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 872
AccB7I CCANNNNNTGG 1 cut(s) 485
AccII CGCG 1 cut(s) 39
AciI CCGC 2 cut(s) 37, 315
AclWI GGATC 2 cut(s) 678, 691
AcsI RAATTY 1 cut(s) 607
AcuI CTGAAG 1 cut(s) 266
AfaI GTAC 3 cut(s) 201, 283, 453
AfiI CCNNNNNNNGG 2 cut(s) 485, 569
AflIII ACRYGT 1 cut(s) 454
AgeI ACCGGT 1 cut(s) 875
AgsI TTSAA 4 cut(s) 106, 311, 554, 1071
AhlI ACTAGT 1 cut(s) 260
AjnI CCWGG 4 cut(s) 44, 268, 669, 1059
AluBI AGCT 8 cut(s) 230, 300, 547, 567, 617, 773, 983, 998
AluI AGCT 8 cut(s) 230, 300, 547, 567, 617, 773, 983, 998
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 6 cut(s) 99, 351, 519, 730, 947, 997
AlwI GGATC 2 cut(s) 678, 691
AlwNI CAGNNNCTG 1 cut(s) 244
AoxI GGCC 2 cut(s) 266, 531
ApeKI GCWGC 3 cut(s) 238, 399, 998
ApoI RAATTY 1 cut(s) 607
ArsI GACNNNNNNTTYG 2 cut(s) 129, 161
AseI ATTAAT 1 cut(s) 887
AsiGI ACCGGT 1 cut(s) 875
AsuHPI GGTGA 3 cut(s) 55, 379, 488
BamHI GGATCC 1 cut(s) 683
BanI GGYRCC 1 cut(s) 872
BauI CACGAG 1 cut(s) 542
BbsI GAAGAC 2 cut(s) 139, 714
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 3 cut(s) 250, 386, 985
BccI CCATC 2 cut(s) 507, 905
BciT130I CCWGG 4 cut(s) 46, 270, 671, 1061
BclI TGATCA 2 cut(s) 493, 810
BcoDI GTCTC 6 cut(s) 99, 351, 519, 730, 947, 997
BcuI ACTAGT 1 cut(s) 260
BfaI CTAG 6 cut(s) 261, 279, 462, 564, 728, 837
BfmI CTRYAG 3 cut(s) 236, 967, 999
BisI GCNGC 3 cut(s) 239, 400, 999
BlsI GCNGC 3 cut(s) 240, 401, 1000
BmcAI AGTACT 2 cut(s) 201, 283
Bme1390I CCNGG 4 cut(s) 46, 270, 671, 1061
BmiI GGNNCC 2 cut(s) 685, 874
BmrFI CCNGG 4 cut(s) 46, 270, 671, 1061
BmsI GCATC 4 cut(s) 165, 748, 823, 914
BpiI GAAGAC 2 cut(s) 139, 714
BpuEI CTTGAG 3 cut(s) 74, 130, 931
BsaAI YACGTR 1 cut(s) 455
BsaBI GATNNNNATC 1 cut(s) 498
BsaI GGTCTC 1 cut(s) 947
BsaJI CCNNGG 1 cut(s) 669
BsaWI WCCGGW 2 cut(s) 389, 875
Bsc4I CCNNNNNNNGG 2 cut(s) 485, 569
Bse118I RCCGGY 3 cut(s) 221, 869, 875
Bse1I ACTGG 1 cut(s) 343
Bse3DI GCAATG 1 cut(s) 409
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 4 cut(s) 46, 270, 671, 1061
BseDI CCNNGG 1 cut(s) 669
BseGI GGATG 2 cut(s) 499, 763
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 2 cut(s) 485, 569
BseMI GCAATG 1 cut(s) 409
BseMII CTCAG 2 cut(s) 362, 1008
BseNI ACTGG 1 cut(s) 343
BseRI GAGGAG 1 cut(s) 748
BseXI GCAGC 3 cut(s) 250, 386, 985
Bsh1236I CGCG 1 cut(s) 39
BshFI GGCC 2 cut(s) 268, 533
BshNI GGYRCC 1 cut(s) 872
BshTI ACCGGT 1 cut(s) 875
BsiHKAI GWGCWC 1 cut(s) 90
BsiSI CCGG 4 cut(s) 222, 390, 870, 876
BslI CCNNNNNNNGG 2 cut(s) 485, 569
BsmAI GTCTC 6 cut(s) 99, 351, 519, 730, 947, 997
BsnI GGCC 2 cut(s) 268, 533
Bso31I GGTCTC 1 cut(s) 947
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 7 cut(s) 124, 418, 493, 538, 575, 683, 810
BspACI CCGC 2 cut(s) 37, 315
BspANI GGCC 2 cut(s) 268, 533
BspCNI CTCAG 2 cut(s) 361, 1007
BspFNI CGCG 1 cut(s) 39
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 2 cut(s) 685, 874
BspMAI CTGCAG 2 cut(s) 240, 1003
BspPI GGATC 2 cut(s) 678, 691
BspQI GCTCTTC 1 cut(s) 648
BspT107I GGYRCC 1 cut(s) 872
BspTNI GGTCTC 1 cut(s) 947
BsrDI GCAATG 1 cut(s) 409
BsrFI RCCGGY 3 cut(s) 221, 869, 875
BsrI ACTGG 1 cut(s) 343
BssAI RCCGGY 3 cut(s) 221, 869, 875
BssECI CCNNGG 1 cut(s) 669
BssMI GATC 7 cut(s) 124, 418, 493, 538, 575, 683, 810
BssSI CACGAG 1 cut(s) 542
Bst2BI CACGAG 1 cut(s) 542
Bst2UI CCWGG 4 cut(s) 46, 270, 671, 1061
Bst4CI ACNGT 2 cut(s) 212, 968
Bst6I CTCTTC 2 cut(s) 618, 648
BstBAI YACGTR 1 cut(s) 455
BstC8I GCNNGC 3 cut(s) 298, 903, 1035
BstDEI CTNAG 3 cut(s) 348, 712, 994
BstF5I GGATG 2 cut(s) 499, 763
BstFNI CGCG 1 cut(s) 39
BstKTI GATC 7 cut(s) 127, 421, 496, 541, 578, 686, 813
BstMAI GTCTC 6 cut(s) 99, 351, 519, 730, 947, 997
BstMBI GATC 7 cut(s) 124, 418, 493, 538, 575, 683, 810
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstNI CCWGG 4 cut(s) 46, 270, 671, 1061
BstSCI CCNGG 4 cut(s) 44, 268, 669, 1059
BstSFI CTRYAG 3 cut(s) 236, 967, 999
BstUI CGCG 1 cut(s) 39
BstV1I GCAGC 3 cut(s) 250, 386, 985
BstV2I GAAGAC 2 cut(s) 139, 714
BstX2I RGATCY 1 cut(s) 683
BstYI RGATCY 1 cut(s) 683
BsuRI GGCC 2 cut(s) 268, 533
BtsCI GGATG 2 cut(s) 499, 763
BtsIMutI CAGTG 2 cut(s) 148, 1035
Cac8I GCNNGC 3 cut(s) 298, 903, 1035
CaiI CAGNNNCTG 1 cut(s) 244
CciI TCATGA 1 cut(s) 439
Cfr10I RCCGGY 3 cut(s) 221, 869, 875
CsiI ACCWGGT 1 cut(s) 44
Csp6I GTAC 3 cut(s) 200, 282, 452
CspAI ACCGGT 1 cut(s) 875
CviAII CATG 4 cut(s) 172, 434, 440, 745
CviQI GTAC 3 cut(s) 200, 282, 452
DdeI CTNAG 3 cut(s) 348, 712, 994
DpnI GATC 7 cut(s) 126, 420, 495, 540, 577, 685, 812
DpnII GATC 7 cut(s) 124, 418, 493, 538, 575, 683, 810
Eam1104I CTCTTC 2 cut(s) 618, 648
EarI CTCTTC 2 cut(s) 618, 648
Eco31I GGTCTC 1 cut(s) 947
Eco57I CTGAAG 1 cut(s) 266
EcoRII CCWGG 4 cut(s) 44, 268, 669, 1059
FaeI CATG 4 cut(s) 175, 437, 443, 748
FaiI YATR 7 cut(s) 33, 173, 206, 435, 441, 746, 942
FatI CATG 4 cut(s) 171, 433, 439, 744
FauI CCCGC 1 cut(s) 44
FbaI TGATCA 2 cut(s) 493, 810
Fnu4HI GCNGC 3 cut(s) 239, 400, 999
FokI GGATG 2 cut(s) 486, 770
Fsp4HI GCNGC 3 cut(s) 239, 400, 999
FspBI CTAG 6 cut(s) 261, 279, 462, 564, 728, 837
GluI GCNGC 3 cut(s) 239, 400, 999
HaeIII GGCC 2 cut(s) 268, 533
HapII CCGG 4 cut(s) 222, 390, 870, 876
Hin1II CATG 4 cut(s) 175, 437, 443, 748
HinfI GANTC 2 cut(s) 944, 1064
HpaII CCGG 4 cut(s) 222, 390, 870, 876
HphI GGTGA 3 cut(s) 55, 379, 488
Hpy166II GTNNAC 2 cut(s) 603, 894
Hpy188I TCNGA 9 cut(s) 333, 351, 418, 423, 688, 844, 910, 1009, 1097
Hpy188III TCNNGA 5 cut(s) 128, 440, 472, 542, 728
Hpy8I GTNNAC 2 cut(s) 603, 894
HpyAV CCTTC 5 cut(s) 68, 336, 625, 691, 695
HpyCH4III ACNGT 2 cut(s) 212, 968
HpyCH4IV ACGT 1 cut(s) 454
HpyCH4V TGCA 5 cut(s) 238, 296, 402, 1001, 1048
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpyF3I CTNAG 3 cut(s) 348, 712, 994
HpySE526I ACGT 1 cut(s) 454
Hsp92II CATG 4 cut(s) 175, 437, 443, 748
Ksp22I TGATCA 2 cut(s) 493, 810
Kzo9I GATC 7 cut(s) 124, 418, 493, 538, 575, 683, 810
LguI GCTCTTC 1 cut(s) 648
LmnI GCTCC 1 cut(s) 614
Lsp1109I GCAGC 3 cut(s) 250, 386, 985
LweI GCATC 4 cut(s) 165, 748, 823, 914
MabI ACCWGGT 1 cut(s) 44
MaeI CTAG 6 cut(s) 261, 279, 462, 564, 728, 837
MaeII ACGT 1 cut(s) 454
MaeIII GTNAC 3 cut(s) 212, 976, 1087
MalI GATC 7 cut(s) 126, 420, 495, 540, 577, 685, 812
MboI GATC 7 cut(s) 124, 418, 493, 538, 575, 683, 810
MflI RGATCY 1 cut(s) 683
MhlI GDGCHC 1 cut(s) 90
MluCI AATT 4 cut(s) 525, 607, 786, 985
MlyI GAGTC 1 cut(s) 938
MnlI CCTC 5 cut(s) 4, 71, 124, 436, 726
MseI TTAA 4 cut(s) 447, 528, 866, 887
MslI CAYNNNNRTG 1 cut(s) 438
MspA1I CMGCKG 1 cut(s) 998
MspI CCGG 4 cut(s) 222, 390, 870, 876
MspR9I CCNGG 4 cut(s) 46, 270, 671, 1061
MvaI CCWGG 4 cut(s) 46, 270, 671, 1061
MvnI CGCG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 247
NdeII GATC 7 cut(s) 124, 418, 493, 538, 575, 683, 810
NlaIII CATG 4 cut(s) 175, 437, 443, 748
NlaIV GGNNCC 2 cut(s) 685, 874
NmuCI GTSAC 1 cut(s) 976
PagI TCATGA 1 cut(s) 439
PciSI GCTCTTC 1 cut(s) 648
PfeI GAWTC 1 cut(s) 1064
PflMI CCANNNNNTGG 1 cut(s) 485
PinAI ACCGGT 1 cut(s) 875
PkrI GCNGC 3 cut(s) 240, 401, 1000
PleI GAGTC 1 cut(s) 938
PpsI GAGTC 1 cut(s) 938
Ppu21I YACGTR 1 cut(s) 455
PshBI ATTAAT 1 cut(s) 887
Psp6I CCWGG 4 cut(s) 44, 268, 669, 1059
PspGI CCWGG 4 cut(s) 44, 268, 669, 1059
PspN4I GGNNCC 2 cut(s) 685, 874
PsrI GAACNNNNNNTAC 2 cut(s) 265, 297
PstI CTGCAG 2 cut(s) 240, 1003
PstNI CAGNNNCTG 1 cut(s) 244
PsuI RGATCY 1 cut(s) 683
PvuII CAGCTG 1 cut(s) 998
RsaI GTAC 3 cut(s) 201, 283, 453
RsaNI GTAC 3 cut(s) 200, 282, 452
RseI CAYNNNNRTG 1 cut(s) 438
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 4 cut(s) 447, 528, 866, 887
SatI GCNGC 3 cut(s) 239, 400, 999
Sau3AI GATC 7 cut(s) 124, 418, 493, 538, 575, 683, 810
ScaI AGTACT 2 cut(s) 201, 283
SchI GAGTC 1 cut(s) 938
ScrFI CCNGG 4 cut(s) 46, 270, 671, 1061
SduI GDGCHC 1 cut(s) 90
SexAI ACCWGGT 1 cut(s) 44
SfaNI GCATC 4 cut(s) 165, 748, 823, 914
SfcI CTRYAG 3 cut(s) 236, 967, 999
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 3 cut(s) 89, 109, 946
SmoI CTYRAG 3 cut(s) 89, 109, 946
SpeI ACTAGT 1 cut(s) 260
Sse9I AATT 4 cut(s) 525, 607, 786, 985
SsiI CCGC 2 cut(s) 37, 315
SspMI CTAG 6 cut(s) 261, 279, 462, 564, 728, 837
StyD4I CCNGG 4 cut(s) 44, 268, 669, 1059
TaaI ACNGT 2 cut(s) 212, 968
TaiI ACGT 1 cut(s) 457
TaqII GACCGA 1 cut(s) 137
TasI AATT 4 cut(s) 525, 607, 786, 985
TatI WGTACW 2 cut(s) 199, 281
TfiI GAWTC 1 cut(s) 1064
Tru1I TTAA 4 cut(s) 447, 528, 866, 887
Tru9I TTAA 4 cut(s) 447, 528, 866, 887
TscAI CASTG 2 cut(s) 148, 1035
TseFI GTSAC 1 cut(s) 976
TseI GCWGC 3 cut(s) 238, 399, 998
Tsp45I GTSAC 1 cut(s) 976
TspDTI ATGAA 4 cut(s) 422, 428, 710, 831
TspRI CASTG 2 cut(s) 148, 1035
Van91I CCANNNNNTGG 1 cut(s) 485
VspI ATTAAT 1 cut(s) 887
XapI RAATTY 1 cut(s) 607
XbaI TCTAGA 1 cut(s) 727
XspI CTAG 6 cut(s) 261, 279, 462, 564, 728, 837
ZrmI AGTACT 2 cut(s) 201, 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.