FvH4_5g15090

Protein PHYTOCHROME KINASE SUBSTRATE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0015881
Physical Location & Seq
Forward (+)
8538084 .. 8539329
1246 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g15090.t1

Sequence Viewer

Length: 1098 bp
ATGGAAAGAGAGGCTAATAAGGCCACAACTCCAACAACTCATACCCGCGACGCCTCGTTTTCTTCTTACCTCACCAGAGCAGAAGGAAACTTAGTGTTCAAGTCTCCTGCCTTGAACTTGAGCAAAAGGATTGATCAGGACGGCGAAATTAGTGTCTTCGGCGCTGAAAGATATTTCAGCATGATGCTAGAAGATGATAGTCCAAGAGTACTTGTGGACTATAACAACACAAGCAGAGCTGGTCTGCAGCTAGAGAAGCAAACAAAGACTAGCAGGCAAGGAACTCCTAGTGCTTGTTCTAATGCAAGTTGGAACAATCAAACTGATTATTTGCCTTCTTGGAGAAGAAACCAATCTCCGAACAAGAAGAAAAATGTGAATGGAAAGAAGATATTTTCCGGCTTTGTCTGCAGTGGTTCTTGTTCAGATCAGAAATCCATTCATGTTCATGAAGTTAATGTTCGTGTTGCTAGAGATTTCAAGAAACAAAGTTTTGGAATGGATCATCATGTCAAGAAGGATCAACCAAGATTTAAGGCCAAGGAGGTTGAGCTTCTACACCACTACCCTAGCTTTGGAGGATCAAACAAAGAACATCTTGCGTTTGCAAATTTTGGAGCTAAAGAAGAGAAGGCAAAACAAGAAGAAGAAAAGCCACGAAAATCCCTGGATGTGTTTGGATCCGAAATCATGAAGAAGGGAGAAGACATAGTGGCAATAAATCTAGAGAGGAGACTTTCCATGTTATCTTGGGATGCCATTCCAAAACCTCAAAGCCACTCAATTACTTCTGGAAATGATGAAATGAGCAATGATGATAATGAGAGTGATGCTAGTTCTGATTTGTTTGAGATTGAGAACTTAACCGGAACCGGTCAGCCATTAATGTTCACAAAGCAAGCATCTGACGGATTGACGTCCATGGCTTCCCCAACCAAGTACGGGTCAAGTGAGGCCAGCATTGACTGTAGTGTTGTCACAGCTAATGTTTTCTCAGCTGCAGTTTCAGATTACGGTAAGAAGAACTTAGTGCCGGCGAACCAACTGCAACATCAAAGCTTGGAATCAATGTGGAAAGTAAGGAAATTTACAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

366

Amino Acids

40.75

Weight (kDa)

8.19

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015881)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18810
fragaria_vesca FvH4_5g15090
malus_domestica MD06G1192200.v1.1 MD14G1198800.v1.1
prunus_persica Prupe.5G191900_v2.0.a1
pyrus_communis pycom06g17030
rosa_chinensis RchiOBHm_Chr7g0181121
rosa_laevigata RLG00000005212
rosa_roxburghii Rroxscaffold_3G00272260
rosa_rugosa Rorug06G0438700
rosa_samantha Rh7AG040500 Rh7BG039900 Rh7CG041900 Rh7DG040300
rosa_wichuraiana Rw7G003340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 920
AccII CGCG 1 cut(s) 48
AciI CCGC 1 cut(s) 46
AclWI GGATC 5 cut(s) 510, 528, 589, 675, 688
AcsI RAATTY 2 cut(s) 610, 1085
AcyI GRCGYC 2 cut(s) 51, 917
AfaI GTAC 2 cut(s) 210, 941
AfiI CCNNNNNNNGG 2 cut(s) 575, 942
AgeI ACCGGT 1 cut(s) 872
AgsI TTSAA 3 cut(s) 100, 115, 481
AjnI CCWGG 1 cut(s) 666
AluBI AGCT 8 cut(s) 239, 250, 553, 573, 620, 983, 998, 1059
AluI AGCT 8 cut(s) 239, 250, 553, 573, 620, 983, 998, 1059
Alw26I GTCTC 2 cut(s) 108, 727
AlwI GGATC 5 cut(s) 510, 528, 589, 675, 688
AoxI GGCC 3 cut(s) 21, 537, 954
ApeKI GCWGC 2 cut(s) 247, 998
ApoI RAATTY 2 cut(s) 610, 1085
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
AseI ATTAAT 1 cut(s) 884
AsiGI ACCGGT 1 cut(s) 872
AspLEI GCGC 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 64
BamHI GGATCC 1 cut(s) 680
BbsI GAAGAC 2 cut(s) 148, 711
BbvI GCAGC 2 cut(s) 259, 985
BceAI ACGGC 1 cut(s) 157
BcgI CGANNNNNNTGC 2 cut(s) 1027, 1061
BciT130I CCWGG 1 cut(s) 668
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 2 cut(s) 108, 727
BfaI CTAG 8 cut(s) 188, 251, 270, 288, 471, 570, 725, 834
BfmI CTRYAG 4 cut(s) 245, 409, 967, 999
BfoI RGCGCY 1 cut(s) 165
BisI GCNGC 2 cut(s) 248, 999
BlsI GCNGC 2 cut(s) 249, 1000
BmcAI AGTACT 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 668
BmiI GGNNCC 2 cut(s) 682, 871
BmrFI CCNGG 1 cut(s) 668
BmsI GCATC 4 cut(s) 174, 745, 820, 911
BpiI GAAGAC 2 cut(s) 148, 711
BpuEI CTTGAG 1 cut(s) 139
BsaHI GRCGYC 2 cut(s) 51, 917
BsaJI CCNNGG 3 cut(s) 540, 666, 921
BsaWI WCCGGW 2 cut(s) 866, 872
Bsc4I CCNNNNNNNGG 2 cut(s) 575, 942
Bse118I RCCGGY 2 cut(s) 872, 1033
Bse3DI GCAATG 1 cut(s) 817
BseBI CCWGG 1 cut(s) 668
BseDI CCNNGG 3 cut(s) 540, 666, 921
BseGI GGATG 2 cut(s) 676, 760
BseLI CCNNNNNNNGG 2 cut(s) 575, 942
BseMI GCAATG 1 cut(s) 817
BseMII CTCAG 1 cut(s) 1008
BseRI GAGGAG 1 cut(s) 745
BseXI GCAGC 2 cut(s) 259, 985
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 3 cut(s) 23, 539, 956
BshTI ACCGGT 1 cut(s) 872
BsiSI CCGG 4 cut(s) 399, 867, 873, 1034
BslI CCNNNNNNNGG 2 cut(s) 575, 942
BsmAI GTCTC 2 cut(s) 108, 727
BsnI GGCC 3 cut(s) 23, 539, 956
Bsp143I GATC 6 cut(s) 133, 427, 502, 520, 581, 680
Bsp19I CCATGG 1 cut(s) 921
BspACI CCGC 1 cut(s) 46
BspANI GGCC 3 cut(s) 23, 539, 956
BspCNI CTCAG 1 cut(s) 1007
BspFNI CGCG 1 cut(s) 48
BspHI TCATGA 2 cut(s) 448, 690
BspLI GGNNCC 2 cut(s) 682, 871
BspMAI CTGCAG 3 cut(s) 249, 413, 1003
BspPI GGATC 5 cut(s) 510, 528, 589, 675, 688
BsrDI GCAATG 1 cut(s) 817
BsrFI RCCGGY 2 cut(s) 872, 1033
BssAI RCCGGY 2 cut(s) 872, 1033
BssECI CCNNGG 3 cut(s) 540, 666, 921
BssMI GATC 6 cut(s) 133, 427, 502, 520, 581, 680
BssNI GRCGYC 2 cut(s) 51, 917
BssT1I CCWWGG 2 cut(s) 540, 921
Bst2UI CCWGG 1 cut(s) 668
Bst4CI ACNGT 2 cut(s) 968, 1016
Bst6I CTCTTC 1 cut(s) 621
BstACI GRCGYC 2 cut(s) 51, 917
BstC8I GCNNGC 4 cut(s) 275, 900, 958, 1035
BstDEI CTNAG 3 cut(s) 91, 994, 1027
BstDSI CCRYGG 1 cut(s) 921
BstF5I GGATG 2 cut(s) 676, 760
BstFNI CGCG 1 cut(s) 48
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 6 cut(s) 136, 430, 505, 523, 584, 683
BstMAI GTCTC 2 cut(s) 108, 727
BstMBI GATC 6 cut(s) 133, 427, 502, 520, 581, 680
BstMWI GCNNNNNNNGC 3 cut(s) 20, 256, 408
BstNI CCWGG 1 cut(s) 668
BstSCI CCNGG 1 cut(s) 666
BstSFI CTRYAG 4 cut(s) 245, 409, 967, 999
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 259, 985
BstV2I GAAGAC 2 cut(s) 148, 711
BstX2I RGATCY 1 cut(s) 680
BstYI RGATCY 1 cut(s) 680
BsuRI GGCC 3 cut(s) 23, 539, 956
BtgI CCRYGG 1 cut(s) 921
BtsCI GGATG 2 cut(s) 676, 760
BtsI GCAGTG 1 cut(s) 418
BtsIMutI CAGTG 1 cut(s) 418
Cac8I GCNNGC 4 cut(s) 275, 900, 958, 1035
CciI TCATGA 2 cut(s) 448, 690
CfoI GCGC 1 cut(s) 164
Cfr10I RCCGGY 2 cut(s) 872, 1033
CseI GACGC 1 cut(s) 59
Csp6I GTAC 2 cut(s) 209, 940
CspAI ACCGGT 1 cut(s) 872
CviAII CATG 7 cut(s) 181, 443, 449, 509, 691, 742, 922
CviQI GTAC 2 cut(s) 209, 940
DdeI CTNAG 3 cut(s) 91, 994, 1027
DpnI GATC 6 cut(s) 135, 429, 504, 522, 583, 682
DpnII GATC 6 cut(s) 133, 427, 502, 520, 581, 680
Eam1104I CTCTTC 1 cut(s) 621
EarI CTCTTC 1 cut(s) 621
Eco130I CCWWGG 2 cut(s) 540, 921
EcoRII CCWGG 1 cut(s) 666
EcoT14I CCWWGG 2 cut(s) 540, 921
ErhI CCWWGG 2 cut(s) 540, 921
FaeI CATG 7 cut(s) 184, 446, 452, 512, 694, 745, 925
FalI AAGNNNNNCTT 4 cut(s) 582, 614, 1010, 1042
FatI CATG 7 cut(s) 180, 442, 448, 508, 690, 741, 921
FauI CCCGC 1 cut(s) 53
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 248, 999
FokI GGATG 2 cut(s) 683, 767
Fsp4HI GCNGC 2 cut(s) 248, 999
FspBI CTAG 8 cut(s) 188, 251, 270, 288, 471, 570, 725, 834
GlaI GCGC 1 cut(s) 163
GluI GCNGC 2 cut(s) 248, 999
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 3 cut(s) 23, 539, 956
HapII CCGG 4 cut(s) 399, 867, 873, 1034
HgaI GACGC 1 cut(s) 59
HhaI GCGC 1 cut(s) 164
Hin1I GRCGYC 2 cut(s) 51, 917
Hin1II CATG 7 cut(s) 184, 446, 452, 512, 694, 745, 925
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HindIII AAGCTT 1 cut(s) 1057
HinfI GANTC 1 cut(s) 1064
HpaII CCGG 4 cut(s) 399, 867, 873, 1034
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 2 cut(s) 217, 891
Hpy188I TCNGA 8 cut(s) 360, 427, 432, 685, 841, 907, 1009, 1097
Hpy188III TCNNGA 7 cut(s) 137, 449, 481, 514, 691, 725, 792
Hpy8I GTNNAC 2 cut(s) 217, 891
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 5 cut(s) 77, 345, 511, 625, 691
HpyCH4III ACNGT 2 cut(s) 968, 1016
HpyCH4IV ACGT 1 cut(s) 917
HpyCH4V TGCA 6 cut(s) 247, 305, 411, 608, 1001, 1048
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 256, 408
HpyF3I CTNAG 3 cut(s) 91, 994, 1027
HpySE526I ACGT 1 cut(s) 917
Hsp92I GRCGYC 2 cut(s) 51, 917
Hsp92II CATG 7 cut(s) 184, 446, 452, 512, 694, 745, 925
HspAI GCGC 1 cut(s) 162
KroI GCCGGC 1 cut(s) 1033
KroNI GCCGGC 1 cut(s) 1035
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 6 cut(s) 133, 427, 502, 520, 581, 680
LmnI GCTCC 1 cut(s) 617
Lsp1109I GCAGC 2 cut(s) 259, 985
LweI GCATC 4 cut(s) 174, 745, 820, 911
MaeI CTAG 8 cut(s) 188, 251, 270, 288, 471, 570, 725, 834
MaeII ACGT 1 cut(s) 917
MaeIII GTNAC 1 cut(s) 976
MalI GATC 6 cut(s) 135, 429, 504, 522, 583, 682
MboI GATC 6 cut(s) 133, 427, 502, 520, 581, 680
MflI RGATCY 1 cut(s) 680
MluCI AATT 4 cut(s) 147, 610, 783, 1085
MmeI TCCRAC 2 cut(s) 56, 290
MnlI CCTC 8 cut(s) 4, 64, 80, 538, 572, 723, 780, 946
MroNI GCCGGC 1 cut(s) 1033
MseI TTAA 4 cut(s) 456, 534, 863, 884
MslI CAYNNNNRTG 1 cut(s) 447
MspA1I CMGCKG 1 cut(s) 998
MspI CCGG 4 cut(s) 399, 867, 873, 1034
MspR9I CCNGG 1 cut(s) 668
MvaI CCWGG 1 cut(s) 668
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 3 cut(s) 20, 256, 408
NaeI GCCGGC 1 cut(s) 1035
NcoI CCATGG 1 cut(s) 921
NdeII GATC 6 cut(s) 133, 427, 502, 520, 581, 680
NgoMIV GCCGGC 1 cut(s) 1033
NlaIII CATG 7 cut(s) 184, 446, 452, 512, 694, 745, 925
NlaIV GGNNCC 2 cut(s) 682, 871
NmuCI GTSAC 1 cut(s) 976
PagI TCATGA 2 cut(s) 448, 690
PdiI GCCGGC 1 cut(s) 1035
PfeI GAWTC 1 cut(s) 1064
PinAI ACCGGT 1 cut(s) 872
PkrI GCNGC 2 cut(s) 249, 1000
PshBI ATTAAT 1 cut(s) 884
Psp6I CCWGG 1 cut(s) 666
PspGI CCWGG 1 cut(s) 666
PspN4I GGNNCC 2 cut(s) 682, 871
PstI CTGCAG 3 cut(s) 249, 413, 1003
PsuI RGATCY 1 cut(s) 680
PvuII CAGCTG 1 cut(s) 998
RsaI GTAC 2 cut(s) 210, 941
RsaNI GTAC 2 cut(s) 209, 940
RseI CAYNNNNRTG 1 cut(s) 447
SaqAI TTAA 4 cut(s) 456, 534, 863, 884
SatI GCNGC 2 cut(s) 248, 999
Sau3AI GATC 6 cut(s) 133, 427, 502, 520, 581, 680
ScaI AGTACT 1 cut(s) 210
ScrFI CCNGG 1 cut(s) 668
SfaNI GCATC 4 cut(s) 174, 745, 820, 911
SfcI CTRYAG 4 cut(s) 245, 409, 967, 999
SmiMI CAYNNNNRTG 1 cut(s) 447
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
Sse9I AATT 4 cut(s) 147, 610, 783, 1085
SsiI CCGC 1 cut(s) 46
SspMI CTAG 8 cut(s) 188, 251, 270, 288, 471, 570, 725, 834
StyD4I CCNGG 1 cut(s) 666
StyI CCWWGG 2 cut(s) 540, 921
TaaI ACNGT 2 cut(s) 968, 1016
TaiI ACGT 1 cut(s) 920
TasI AATT 4 cut(s) 147, 610, 783, 1085
TatI WGTACW 1 cut(s) 208
TfiI GAWTC 1 cut(s) 1064
Tru1I TTAA 4 cut(s) 456, 534, 863, 884
Tru9I TTAA 4 cut(s) 456, 534, 863, 884
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 1 cut(s) 976
TseI GCWGC 2 cut(s) 247, 998
Tsp45I GTSAC 1 cut(s) 976
TspDTI ATGAA 5 cut(s) 431, 437, 465, 707, 816
TspGWI ACGGA 1 cut(s) 924
TspRI CASTG 1 cut(s) 418
VspI ATTAAT 1 cut(s) 884
XapI RAATTY 2 cut(s) 610, 1085
XbaI TCTAGA 1 cut(s) 724
XspI CTAG 8 cut(s) 188, 251, 270, 288, 471, 570, 725, 834
ZraI GACGTC 1 cut(s) 918
ZrmI AGTACT 1 cut(s) 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.