Prupe.5G191900_v2.0.a1

Protein PHYTOCHROME KINASE SUBSTRATE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0015881
Physical Location & Seq
Reverse (-)
15717913 .. 15719061
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G191900.1

Sequence Viewer

Length: 1149 bp
ATGGAAGGAAAAGCAAACAACAGTGCTCATACCCGGGATGCTTCATTTTCTTCTTACATCAGCGGAGCAGAAGGGAACTTTGTCCTCAAACTTGCAGGGTCAGTTCAGACTCCCCCTCCTGCCATGACCTTGAGCCGAAAGACTGAGGAGGGAGAAATCAGCGTCTTTGGTGCTGAAAGGTATTTCAACATGATGCTGGAAGATGAGGGTCCAAGAATTGTGGACTATAACACAAGCAAACATGGGCATAATAAGAAAGAAAACAGAACTGGTCAGCACTACAAGCAACCAAATAGCAGGCCAGGAACTCCTAGTACTTGTTCTGAAGCAAGTTGGAACAGCCAAAGCGCCTTGTTACCGTCTCTGAGAAACTCATCTCACAATAAGAAGAAAAAGGTAAATGGAAAGATTAAAAGCTTTTCTATTTTCAGCTGCAATGGATGTTCAGATAAGAAAGCCATTTATATTCATGAGATAAATGCTGGGCATGGAGGGCATCATGGTAAAGACGCCAGGAAGCAAAGCGTTCGAATTGATCAAAATCCTGTCAAGCAGTCTCAACCAAGATTCAAGGAAAGAGATGAGCTTCACTACTCTAGCTTTCAAACATCACACAAGGAAGAGCATTTTGCATTCACAAATTTGAATTCTAGTGCACAGAAATCTGCAGCTAAATCAGAGTTGGGAGAGAAGAAAACAAAAGAAGAAGAAGAGCCACGAAAGTCACTGGAGGTGTTTGGATCCCACATGATGAAGGGAGACATAGTAGCAATAAATCTGGAGAGAAGACTCTCCATGCTAAGTTGGGATGCCATTCCAAAAGCTCAAAGCCTCTCAAATGCTTCGGTGACAGGTCCGGTGATCAATGAAGATGTGGAGAGTGATGCTAGTTCAGATTTGTTTGAGATAGAGAACCTACCTGGCAGTGGACAAACACCGTTTACAAGTCACACATCTGATGGAATGTCTGTGGCCTCTGCTGCCCGGTATGATTCAAGTGAGACCAGCATGGAGTGGAGTGTTGTCACAGCCGGTGATGAAAAGAAACTGGCAGCAAATGGCGGAACACCTGATCCAACAACCACTGGCACAGCAGGAGTTGCTCAAAGGTTAGAACCTTCAATGGAAAAGGGGAAAGCTACAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

383

Amino Acids

41.64

Weight (kDa)

7.26

Isoelectric Point (pI)

39.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015881)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G18810
fragaria_vesca FvH4_5g15090
malus_domestica MD06G1192200.v1.1 MD14G1198800.v1.1
prunus_persica Prupe.5G191900_v2.0.a1
pyrus_communis pycom06g17030
rosa_chinensis RchiOBHm_Chr7g0181121
rosa_laevigata RLG00000005212
rosa_roxburghii Rroxscaffold_3G00272260
rosa_rugosa Rorug06G0438700
rosa_samantha Rh7AG040500 Rh7BG039900 Rh7CG041900 Rh7DG040300
rosa_wichuraiana Rw7G003340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 63, 1062
AclWI GGATC 3 cut(s) 735, 748, 1067
AcsI RAATTY 2 cut(s) 640, 646
AcuI CTGAAG 1 cut(s) 345
AcyI GRCGYC 1 cut(s) 510
AfaI GTAC 1 cut(s) 316
AfiI CCNNNNNNNGG 1 cut(s) 926
AgsI TTSAA 6 cut(s) 187, 571, 605, 646, 996, 1122
AjnI CCWGG 3 cut(s) 301, 512, 919
AloI GAACNNNNNNTCC 2 cut(s) 1057, 1089
AluBI AGCT 7 cut(s) 417, 432, 586, 600, 671, 824, 1139
AluI AGCT 7 cut(s) 417, 432, 586, 600, 671, 824, 1139
Alw21I GWGCWC 2 cut(s) 28, 658
Alw26I GTCTC 4 cut(s) 366, 561, 753, 995
Alw44I GTGCAC 1 cut(s) 654
AlwI GGATC 3 cut(s) 735, 748, 1067
Ama87I CYCGRG 1 cut(s) 33
AoxI GGCC 2 cut(s) 299, 972
ApaLI GTGCAC 1 cut(s) 654
ApeKI GCWGC 4 cut(s) 432, 668, 980, 1052
ApoI RAATTY 2 cut(s) 640, 646
AspLEI GCGC 1 cut(s) 350
AspS9I GGNCC 2 cut(s) 209, 854
AsuC2I CCSGG 3 cut(s) 34, 35, 985
AsuHPI GGTGA 3 cut(s) 859, 871, 1046
AsuII TTCGAA 1 cut(s) 529
AvaI CYCGRG 1 cut(s) 33
AvaII GGWCC 2 cut(s) 209, 854
BaeGI GKGCMC 1 cut(s) 658
BamHI GGATCC 1 cut(s) 740
BbsI GAAGAC 1 cut(s) 793
Bbv12I GWGCWC 2 cut(s) 28, 658
BbvI GCAGC 4 cut(s) 419, 680, 967, 1064
BccI CCATC 1 cut(s) 953
BcgI CGANNNNNNTGC 2 cut(s) 509, 543
BciT130I CCWGG 3 cut(s) 303, 514, 921
BclI TGATCA 2 cut(s) 535, 861
BcnI CCSGG 3 cut(s) 34, 35, 985
BcoDI GTCTC 4 cut(s) 366, 561, 753, 995
BfaI CTAG 4 cut(s) 312, 597, 651, 888
BfmI CTRYAG 2 cut(s) 666, 1140
BfoI RGCGCY 1 cut(s) 351
BisI GCNGC 4 cut(s) 433, 669, 981, 1053
BlsI GCNGC 4 cut(s) 434, 670, 982, 1054
BmcAI AGTACT 1 cut(s) 316
Bme1390I CCNGG 6 cut(s) 34, 35, 303, 514, 921, 985
Bme18I GGWCC 2 cut(s) 209, 854
BmeT110I CYCGRG 1 cut(s) 33
BmgT120I GGNCC 2 cut(s) 209, 854
BmiI GGNNCC 2 cut(s) 210, 742
BmrFI CCNGG 6 cut(s) 34, 35, 303, 514, 921, 985
BmsI GCATC 5 cut(s) 28, 183, 505, 799, 874
BpiI GAAGAC 1 cut(s) 793
BpmI CTGGAG 2 cut(s) 749, 800
Bpu14I TTCGAA 1 cut(s) 529
BpuEI CTTGAG 1 cut(s) 151
BpuMI CCSGG 3 cut(s) 34, 35, 985
BsaBI GATNNNNATC 1 cut(s) 540
BsaHI GRCGYC 1 cut(s) 510
BsaI GGTCTC 1 cut(s) 995
BsaJI CCNNGG 1 cut(s) 33
BsaWI WCCGGW 1 cut(s) 856
BsaXI ACNNNNNCTCC 4 cut(s) 100, 130, 750, 780
Bsc4I CCNNNNNNNGG 1 cut(s) 926
Bse118I RCCGGY 1 cut(s) 1031
Bse1I ACTGG 4 cut(s) 274, 732, 1053, 1090
Bse3DI GCAATG 1 cut(s) 442
Bse8I GATNNNNATC 1 cut(s) 540
BseBI CCWGG 3 cut(s) 303, 514, 921
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 3 cut(s) 43, 446, 814
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 1 cut(s) 926
BseMI GCAATG 1 cut(s) 442
BseMII CTCAG 2 cut(s) 135, 356
BseNI ACTGG 4 cut(s) 274, 732, 1053, 1090
BseRI GAGGAG 1 cut(s) 161
BseSI GKGCMC 1 cut(s) 658
BseXI GCAGC 4 cut(s) 419, 680, 967, 1064
BseYI CCCAGC 1 cut(s) 482
BshFI GGCC 2 cut(s) 301, 974
BsiHKAI GWGCWC 2 cut(s) 28, 658
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 4 cut(s) 34, 857, 985, 1032
BslI CCNNNNNNNGG 1 cut(s) 926
BsmAI GTCTC 4 cut(s) 366, 561, 753, 995
BsmBI CGTCTC 1 cut(s) 366
BsmI GAATGC 1 cut(s) 632
BsnI GGCC 2 cut(s) 301, 974
Bso31I GGTCTC 1 cut(s) 995
BsoBI CYCGRG 1 cut(s) 33
Bsp119I TTCGAA 1 cut(s) 529
Bsp1286I GDGCHC 2 cut(s) 28, 658
Bsp143I GATC 4 cut(s) 535, 740, 861, 1072
BspACI CCGC 2 cut(s) 63, 1062
BspANI GGCC 2 cut(s) 301, 974
BspCNI CTCAG 2 cut(s) 136, 357
BspHI TCATGA 1 cut(s) 469
BspLI GGNNCC 2 cut(s) 210, 742
BspMAI CTGCAG 1 cut(s) 670
BspPI GGATC 3 cut(s) 735, 748, 1067
BspQI GCTCTTC 2 cut(s) 615, 705
BspT104I TTCGAA 1 cut(s) 529
BspTNI GGTCTC 1 cut(s) 995
BsrDI GCAATG 1 cut(s) 442
BsrFI RCCGGY 1 cut(s) 1031
BsrI ACTGG 4 cut(s) 274, 732, 1053, 1090
BssAI RCCGGY 1 cut(s) 1031
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 4 cut(s) 535, 740, 861, 1072
BssNI GRCGYC 1 cut(s) 510
Bst2UI CCWGG 3 cut(s) 303, 514, 921
Bst4CI ACNGT 4 cut(s) 23, 360, 939, 1144
Bst6I CTCTTC 2 cut(s) 615, 705
BstACI GRCGYC 1 cut(s) 510
BstAPI GCANNNNNTGC 1 cut(s) 1100
BstBI TTCGAA 1 cut(s) 529
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 3 cut(s) 144, 365, 800
BstF5I GGATG 3 cut(s) 43, 446, 814
BstH2I RGCGCY 1 cut(s) 351
BstHHI GCGC 1 cut(s) 350
BstKTI GATC 4 cut(s) 538, 743, 864, 1075
BstMAI GTCTC 4 cut(s) 366, 561, 753, 995
BstMBI GATC 4 cut(s) 535, 740, 861, 1072
BstMWI GCNNNNNNNGC 4 cut(s) 283, 493, 980, 1100
BstNI CCWGG 3 cut(s) 303, 514, 921
BstSCI CCNGG 6 cut(s) 32, 33, 301, 512, 919, 983
BstSFI CTRYAG 2 cut(s) 666, 1140
BstSLI GKGCMC 1 cut(s) 658
BstV1I GCAGC 4 cut(s) 419, 680, 967, 1064
BstV2I GAAGAC 1 cut(s) 793
BstX2I RGATCY 1 cut(s) 740
BstYI RGATCY 1 cut(s) 740
BsuRI GGCC 2 cut(s) 301, 974
BtsCI GGATG 3 cut(s) 43, 446, 814
BtsI GCAGTG 1 cut(s) 931
BtsIMutI CAGTG 4 cut(s) 28, 725, 931, 1083
Cac8I GCNNGC 1 cut(s) 299
CciI TCATGA 1 cut(s) 469
CfoI GCGC 1 cut(s) 350
Cfr10I RCCGGY 1 cut(s) 1031
Cfr13I GGNCC 2 cut(s) 209, 854
Cfr9I CCCGGG 1 cut(s) 33
CseI GACGC 2 cut(s) 151, 518
Csp6I GTAC 1 cut(s) 315
CspCI CAANNNNNGTGG 2 cut(s) 201, 236
CviAII CATG 9 cut(s) 124, 190, 242, 470, 488, 500, 748, 796, 1009
CviQI GTAC 1 cut(s) 315
DdeI CTNAG 3 cut(s) 144, 365, 800
DpnI GATC 4 cut(s) 537, 742, 863, 1074
DpnII GATC 4 cut(s) 535, 740, 861, 1072
Eam1104I CTCTTC 2 cut(s) 615, 705
EarI CTCTTC 2 cut(s) 615, 705
EciI GGCGGA 1 cut(s) 1077
Eco31I GGTCTC 1 cut(s) 995
Eco47I GGWCC 2 cut(s) 209, 854
Eco57I CTGAAG 1 cut(s) 345
Eco88I CYCGRG 1 cut(s) 33
EcoRI GAATTC 1 cut(s) 646
EcoRII CCWGG 3 cut(s) 301, 512, 919
Esp3I CGTCTC 1 cut(s) 366
FaeI CATG 9 cut(s) 127, 193, 245, 473, 491, 503, 751, 799, 1012
FatI CATG 9 cut(s) 123, 189, 241, 469, 487, 499, 747, 795, 1008
FbaI TGATCA 2 cut(s) 535, 861
Fnu4HI GCNGC 4 cut(s) 433, 669, 981, 1053
FokI GGATG 3 cut(s) 50, 453, 821
Fsp4HI GCNGC 4 cut(s) 433, 669, 981, 1053
FspBI CTAG 4 cut(s) 312, 597, 651, 888
GlaI GCGC 1 cut(s) 349
GluI GCNGC 4 cut(s) 433, 669, 981, 1053
GsaI CCCAGC 1 cut(s) 486
GsuI CTGGAG 2 cut(s) 749, 800
HaeII RGCGCY 1 cut(s) 351
HaeIII GGCC 2 cut(s) 301, 974
HapII CCGG 4 cut(s) 34, 857, 985, 1032
HgaI GACGC 2 cut(s) 151, 518
HhaI GCGC 1 cut(s) 350
Hin1I GRCGYC 1 cut(s) 510
Hin1II CATG 9 cut(s) 127, 193, 245, 473, 491, 503, 751, 799, 1012
Hin6I GCGC 1 cut(s) 348
HinP1I GCGC 1 cut(s) 348
HindIII AAGCTT 1 cut(s) 415
HinfI GANTC 4 cut(s) 109, 567, 789, 992
HpaII CCGG 4 cut(s) 34, 857, 985, 1032
HphI GGTGA 3 cut(s) 859, 871, 1046
Hpy166II GTNNAC 4 cut(s) 223, 656, 929, 942
Hpy188I TCNGA 8 cut(s) 108, 325, 366, 448, 679, 895, 958, 1148
Hpy188III TCNNGA 2 cut(s) 470, 779
Hpy8I GTNNAC 4 cut(s) 223, 656, 929, 942
HpyAV CCTTC 3 cut(s) 65, 748, 1128
HpyCH4III ACNGT 4 cut(s) 23, 360, 939, 1144
HpyCH4V TGCA 5 cut(s) 95, 435, 632, 656, 668
HpyF10VI GCNNNNNNNGC 4 cut(s) 283, 493, 980, 1100
HpyF3I CTNAG 3 cut(s) 144, 365, 800
Hsp92I GRCGYC 1 cut(s) 510
Hsp92II CATG 9 cut(s) 127, 193, 245, 473, 491, 503, 751, 799, 1012
HspAI GCGC 1 cut(s) 348
Ksp22I TGATCA 2 cut(s) 535, 861
Kzo9I GATC 4 cut(s) 535, 740, 861, 1072
LguI GCTCTTC 2 cut(s) 615, 705
LmnI GCTCC 1 cut(s) 65
Lsp1109I GCAGC 4 cut(s) 419, 680, 967, 1064
LweI GCATC 5 cut(s) 28, 183, 505, 799, 874
MaeI CTAG 4 cut(s) 312, 597, 651, 888
MaeIII GTNAC 5 cut(s) 354, 723, 847, 947, 1024
MalI GATC 4 cut(s) 537, 742, 863, 1074
MboI GATC 4 cut(s) 535, 740, 861, 1072
MflI RGATCY 1 cut(s) 740
MhlI GDGCHC 2 cut(s) 28, 658
MluCI AATT 4 cut(s) 216, 531, 640, 646
MlyI GAGTC 2 cut(s) 103, 783
MmeI TCCRAC 2 cut(s) 314, 1100
MnlI CCTC 9 cut(s) 95, 126, 139, 142, 199, 485, 724, 842, 985
MseI TTAA 1 cut(s) 411
MspA1I CMGCKG 2 cut(s) 63, 432
MspI CCGG 4 cut(s) 34, 857, 985, 1032
MspR9I CCNGG 6 cut(s) 34, 35, 303, 514, 921, 985
Mva1269I GAATGC 1 cut(s) 632
MvaI CCWGG 3 cut(s) 303, 514, 921
MwoI GCNNNNNNNGC 4 cut(s) 283, 493, 980, 1100
NciI CCSGG 3 cut(s) 34, 35, 985
NdeII GATC 4 cut(s) 535, 740, 861, 1072
NlaIII CATG 9 cut(s) 127, 193, 245, 473, 491, 503, 751, 799, 1012
NlaIV GGNNCC 2 cut(s) 210, 742
NmuCI GTSAC 4 cut(s) 723, 847, 947, 1024
NspV TTCGAA 1 cut(s) 529
PagI TCATGA 1 cut(s) 469
PciSI GCTCTTC 2 cut(s) 615, 705
PctI GAATGC 1 cut(s) 632
PfeI GAWTC 2 cut(s) 567, 992
PkrI GCNGC 4 cut(s) 434, 670, 982, 1054
PleI GAGTC 2 cut(s) 103, 783
PpsI GAGTC 2 cut(s) 103, 783
Psp6I CCWGG 3 cut(s) 301, 512, 919
PspFI CCCAGC 1 cut(s) 482
PspGI CCWGG 3 cut(s) 301, 512, 919
PspN4I GGNNCC 2 cut(s) 210, 742
PspPI GGNCC 2 cut(s) 209, 854
PsrI GAACNNNNNNTAC 2 cut(s) 298, 330
PstI CTGCAG 1 cut(s) 670
PsuI RGATCY 1 cut(s) 740
PvuII CAGCTG 1 cut(s) 432
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
SapI GCTCTTC 2 cut(s) 615, 705
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 4 cut(s) 433, 669, 981, 1053
Sau3AI GATC 4 cut(s) 535, 740, 861, 1072
Sau96I GGNCC 2 cut(s) 209, 854
ScaI AGTACT 1 cut(s) 316
SchI GAGTC 2 cut(s) 103, 783
ScrFI CCNGG 6 cut(s) 34, 35, 303, 514, 921, 985
SduI GDGCHC 2 cut(s) 28, 658
SfaNI GCATC 5 cut(s) 28, 183, 505, 799, 874
SfcI CTRYAG 2 cut(s) 666, 1140
SfuI TTCGAA 1 cut(s) 529
SinI GGWCC 2 cut(s) 209, 854
SmaI CCCGGG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
Sse9I AATT 4 cut(s) 216, 531, 640, 646
SsiI CCGC 2 cut(s) 63, 1062
SspMI CTAG 4 cut(s) 312, 597, 651, 888
StyD4I CCNGG 6 cut(s) 32, 33, 301, 512, 919, 983
TaaI ACNGT 4 cut(s) 23, 360, 939, 1144
TaqI TCGA 1 cut(s) 529
TasI AATT 4 cut(s) 216, 531, 640, 646
TatI WGTACW 1 cut(s) 314
TfiI GAWTC 2 cut(s) 567, 992
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 4 cut(s) 28, 732, 931, 1090
TseFI GTSAC 4 cut(s) 723, 847, 947, 1024
TseI GCWGC 4 cut(s) 432, 668, 980, 1052
Tsp45I GTSAC 4 cut(s) 723, 847, 947, 1024
TspDTI ATGAA 5 cut(s) 33, 458, 767, 882, 1053
TspMI CCCGGG 1 cut(s) 33
TspRI CASTG 4 cut(s) 28, 732, 931, 1090
VneI GTGCAC 1 cut(s) 654
VpaK11BI GGWCC 2 cut(s) 209, 854
XapI RAATTY 2 cut(s) 640, 646
XmaI CCCGGG 1 cut(s) 33
XspI CTAG 4 cut(s) 312, 597, 651, 888
ZrmI AGTACT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.